Genes within 1Mb (chr1:52986335:A:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -903463 sc-eQTL 1.78e-02 0.369 0.153 0.056 PB L2
ENSG00000058804 NDC1 -852128 sc-eQTL 3.58e-01 0.215 0.233 0.056 PB L2
ENSG00000081870 HSPB11 -959594 sc-eQTL 3.60e-01 -0.181 0.196 0.056 PB L2
ENSG00000116157 GPX7 383964 sc-eQTL 2.98e-02 0.424 0.193 0.056 PB L2
ENSG00000116171 SCP2 59059 sc-eQTL 5.01e-01 -0.115 0.17 0.056 PB L2
ENSG00000116212 LRRC42 -959750 sc-eQTL 3.93e-01 0.194 0.227 0.056 PB L2
ENSG00000117862 TXNDC12 930164 sc-eQTL 5.15e-01 -0.102 0.156 0.056 PB L2
ENSG00000121310 ECHDC2 59123 sc-eQTL 7.15e-01 0.0929 0.253 0.056 PB L2
ENSG00000134717 BTF3L4 930136 sc-eQTL 5.99e-01 -0.133 0.252 0.056 PB L2
ENSG00000134744 TUT4 432848 sc-eQTL 4.83e-01 0.163 0.232 0.056 PB L2
ENSG00000134748 PRPF38A 581733 sc-eQTL 5.45e-01 0.133 0.219 0.056 PB L2
ENSG00000154222 CC2D1B 620142 sc-eQTL 9.01e-01 0.03 0.241 0.056 PB L2
ENSG00000157184 CPT2 -210457 sc-eQTL 6.68e-01 0.0937 0.218 0.056 PB L2
ENSG00000157193 LRP8 -342134 sc-eQTL 6.64e-01 0.1 0.23 0.056 PB L2
ENSG00000162377 COA7 287988 sc-eQTL 7.44e-01 -0.0735 0.224 0.056 PB L2
ENSG00000162378 ZYG11B 259882 sc-eQTL 4.64e-03 0.685 0.237 0.056 PB L2
ENSG00000162384 CZIB -234299 sc-eQTL 6.19e-01 0.12 0.24 0.056 PB L2
ENSG00000162385 MAGOH -252183 sc-eQTL 8.17e-01 -0.0515 0.222 0.056 PB L2
ENSG00000182183 SHISAL2A 353167 sc-eQTL 4.72e-01 -0.147 0.204 0.056 PB L2
ENSG00000198841 KTI12 952525 sc-eQTL 7.47e-01 0.0747 0.231 0.056 PB L2
ENSG00000230138 LINC02812 -381910 sc-eQTL 4.23e-01 0.144 0.178 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116171 SCP2 59059 eQTL 8.28e-05 -0.18 0.0455 0.0 0.0 0.0304
ENSG00000121310 ECHDC2 59123 eQTL 3.1e-06 -0.234 0.0499 0.0 0.0 0.0304
ENSG00000154222 CC2D1B 620142 eQTL 0.0567 0.0961 0.0504 0.00175 0.0 0.0304
ENSG00000162383 SLC1A7 -156297 eQTL 0.0331 0.168 0.0788 0.0 0.0 0.0304
ENSG00000226147 TUBBP10 -8391 eQTL 0.0126 -0.281 0.112 0.0 0.0 0.0304


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116171 SCP2 59059 8.39e-06 9.29e-06 1.23e-06 4.85e-06 2.22e-06 3.88e-06 1.02e-05 1.84e-06 7.82e-06 4.38e-06 1.1e-05 4.93e-06 1.34e-05 3.83e-06 2.13e-06 5.93e-06 3.83e-06 6.33e-06 2.56e-06 2.66e-06 4.51e-06 8.17e-06 7.23e-06 2.84e-06 1.28e-05 3.04e-06 4.38e-06 3.16e-06 8.87e-06 7.87e-06 4.92e-06 7.35e-07 9.22e-07 2.91e-06 3.56e-06 2.07e-06 1.47e-06 1.43e-06 1.64e-06 9.06e-07 8.61e-07 1.19e-05 1.31e-06 1.54e-07 6.78e-07 1.32e-06 1.06e-06 7.58e-07 5.87e-07
ENSG00000121310 ECHDC2 59123 8.18e-06 9.29e-06 1.24e-06 4.82e-06 2.22e-06 3.88e-06 1.02e-05 1.84e-06 7.82e-06 4.38e-06 1.1e-05 4.93e-06 1.34e-05 3.88e-06 2.13e-06 5.93e-06 3.75e-06 6.33e-06 2.56e-06 2.62e-06 4.51e-06 8.06e-06 7.23e-06 2.84e-06 1.28e-05 3.04e-06 4.38e-06 3.16e-06 8.87e-06 7.87e-06 4.92e-06 7.35e-07 9.22e-07 2.91e-06 3.56e-06 2.07e-06 1.47e-06 1.43e-06 1.64e-06 9.09e-07 8.61e-07 1.19e-05 1.32e-06 1.54e-07 6.78e-07 1.32e-06 1.06e-06 7.58e-07 5.87e-07
ENSG00000226147 TUBBP10 -8391 3.39e-05 3.34e-05 6.39e-06 1.61e-05 5.98e-06 1.51e-05 4.47e-05 4.86e-06 3.11e-05 1.56e-05 3.97e-05 1.78e-05 5.21e-05 1.42e-05 7.12e-06 1.9e-05 1.8e-05 2.52e-05 8.23e-06 7.09e-06 1.56e-05 3.3e-05 3.24e-05 9.82e-06 4.61e-05 8.02e-06 1.46e-05 1.29e-05 3.31e-05 2.81e-05 2.13e-05 1.63e-06 2.8e-06 7.77e-06 1.23e-05 6.19e-06 3.43e-06 3.25e-06 5.2e-06 3.57e-06 1.71e-06 3.92e-05 3.44e-06 4.33e-07 2.67e-06 4.51e-06 4.23e-06 1.72e-06 1.53e-06