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Genes within 1Mb (chr1:51869424:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -9513 sc-eQTL 6.33e-02 -0.432 0.231 0.051 B_Activated L2
ENSG00000085832 EPS15 350158 sc-eQTL 4.60e-01 0.164 0.221 0.051 B_Activated L2
ENSG00000116157 GPX7 -732947 sc-eQTL 1.01e-01 0.35 0.212 0.051 B_Activated L2
ENSG00000117859 OSBPL9 292245 sc-eQTL 2.54e-01 0.263 0.229 0.051 B_Activated L2
ENSG00000117862 TXNDC12 -186747 sc-eQTL 6.34e-01 0.104 0.219 0.051 B_Activated L2
ENSG00000123080 CDKN2C 908679 sc-eQTL 7.38e-01 0.0562 0.168 0.051 B_Activated L2
ENSG00000123091 RNF11 633151 sc-eQTL 1.01e-01 -0.34 0.206 0.051 B_Activated L2
ENSG00000134717 BTF3L4 -186775 sc-eQTL 5.77e-01 0.129 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 -684063 sc-eQTL 8.78e-01 0.033 0.215 0.051 B_Activated L2
ENSG00000134748 PRPF38A -535178 sc-eQTL 1.98e-01 -0.28 0.216 0.051 B_Activated L2
ENSG00000154222 CC2D1B -496769 sc-eQTL 8.35e-01 -0.0443 0.212 0.051 B_Activated L2
ENSG00000162377 COA7 -828923 sc-eQTL 7.50e-01 0.0577 0.181 0.051 B_Activated L2
ENSG00000162378 ZYG11B -857029 sc-eQTL 5.29e-01 0.14 0.221 0.051 B_Activated L2
ENSG00000182183 SHISAL2A -763744 sc-eQTL 2.74e-01 0.213 0.194 0.051 B_Activated L2
ENSG00000185104 FAF1 909157 sc-eQTL 5.43e-01 -0.127 0.209 0.051 B_Activated L2
ENSG00000198841 KTI12 -164386 sc-eQTL 7.74e-01 0.0534 0.186 0.051 B_Activated L2
ENSG00000078618 NRDC -9513 sc-eQTL 8.96e-02 -0.359 0.21 0.05 CD4_CTL L2
ENSG00000085832 EPS15 350158 sc-eQTL 4.56e-01 -0.14 0.188 0.05 CD4_CTL L2
ENSG00000116157 GPX7 -732947 sc-eQTL 9.16e-01 0.0219 0.208 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 292245 sc-eQTL 2.56e-01 -0.248 0.218 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -186747 sc-eQTL 2.25e-01 0.248 0.204 0.05 CD4_CTL L2
ENSG00000123080 CDKN2C 908679 sc-eQTL 1.20e-01 -0.325 0.209 0.05 CD4_CTL L2
ENSG00000123091 RNF11 633151 sc-eQTL 4.90e-01 0.137 0.198 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -186775 sc-eQTL 2.03e-01 0.264 0.207 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -684063 sc-eQTL 3.71e-01 -0.175 0.196 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -535178 sc-eQTL 4.53e-02 0.416 0.206 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -496769 sc-eQTL 8.44e-01 0.041 0.208 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -272670 sc-eQTL 4.93e-01 -0.131 0.191 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -857029 sc-eQTL 2.54e-01 0.234 0.204 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A -763744 sc-eQTL 4.52e-01 0.14 0.185 0.05 CD4_CTL L2
ENSG00000185104 FAF1 909157 sc-eQTL 5.20e-01 -0.114 0.177 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -164386 sc-eQTL 1.88e-01 -0.264 0.2 0.05 CD4_CTL L2
ENSG00000078618 NRDC -9513 sc-eQTL 8.52e-01 -0.0384 0.206 0.051 CD8_TCM L2
ENSG00000085832 EPS15 350158 sc-eQTL 6.11e-01 -0.104 0.203 0.051 CD8_TCM L2
ENSG00000116157 GPX7 -732947 sc-eQTL 1.05e-02 0.554 0.214 0.051 CD8_TCM L2
ENSG00000117859 OSBPL9 292245 sc-eQTL 9.63e-01 0.0102 0.221 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 -186747 sc-eQTL 8.02e-01 0.0502 0.2 0.051 CD8_TCM L2
ENSG00000123080 CDKN2C 908679 sc-eQTL 2.14e-01 -0.244 0.196 0.051 CD8_TCM L2
ENSG00000123091 RNF11 633151 sc-eQTL 1.65e-01 0.285 0.204 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 -186775 sc-eQTL 4.59e-01 0.151 0.204 0.051 CD8_TCM L2
ENSG00000134744 TUT4 -684063 sc-eQTL 5.37e-01 -0.124 0.2 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A -535178 sc-eQTL 8.73e-01 0.0319 0.199 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B -496769 sc-eQTL 6.26e-01 0.0975 0.2 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 -272670 sc-eQTL 4.63e-01 0.15 0.204 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -857029 sc-eQTL 3.52e-01 -0.186 0.2 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A -763744 sc-eQTL 4.02e-01 0.165 0.197 0.051 CD8_TCM L2
ENSG00000185104 FAF1 909157 sc-eQTL 2.67e-01 0.204 0.184 0.051 CD8_TCM L2
ENSG00000198841 KTI12 -164386 sc-eQTL 5.38e-01 0.129 0.21 0.051 CD8_TCM L2
ENSG00000078618 NRDC -9513 sc-eQTL 2.88e-01 -0.206 0.193 0.054 cDC L2
ENSG00000085831 TTC39A 524308 sc-eQTL 3.80e-01 -0.0555 0.0631 0.054 cDC L2
ENSG00000085832 EPS15 350158 sc-eQTL 1.74e-01 -0.293 0.215 0.054 cDC L2
ENSG00000116157 GPX7 -732947 sc-eQTL 1.48e-01 0.258 0.178 0.054 cDC L2
ENSG00000117859 OSBPL9 292245 sc-eQTL 4.83e-01 0.139 0.198 0.054 cDC L2
ENSG00000117862 TXNDC12 -186747 sc-eQTL 2.66e-01 0.21 0.188 0.054 cDC L2
ENSG00000123080 CDKN2C 908679 sc-eQTL 9.91e-01 -0.00234 0.204 0.054 cDC L2
ENSG00000123091 RNF11 633151 sc-eQTL 9.57e-01 -0.0115 0.211 0.054 cDC L2
ENSG00000134717 BTF3L4 -186775 sc-eQTL 9.27e-01 0.0175 0.191 0.054 cDC L2
ENSG00000134744 TUT4 -684063 sc-eQTL 8.83e-01 0.0312 0.212 0.054 cDC L2
ENSG00000134748 PRPF38A -535178 sc-eQTL 7.07e-01 -0.0736 0.195 0.054 cDC L2
ENSG00000154222 CC2D1B -496769 sc-eQTL 2.16e-01 0.263 0.212 0.054 cDC L2
ENSG00000162377 COA7 -828923 sc-eQTL 8.25e-01 0.0446 0.202 0.054 cDC L2
ENSG00000162378 ZYG11B -857029 sc-eQTL 7.90e-01 0.0567 0.212 0.054 cDC L2
ENSG00000185104 FAF1 909157 sc-eQTL 3.76e-02 -0.394 0.188 0.054 cDC L2
ENSG00000198841 KTI12 -164386 sc-eQTL 1.38e-01 0.296 0.199 0.054 cDC L2
ENSG00000078618 NRDC -9513 sc-eQTL 1.92e-01 -0.224 0.171 0.059 pDC L2
ENSG00000085831 TTC39A 524308 sc-eQTL 7.43e-01 0.0545 0.166 0.059 pDC L2
ENSG00000085832 EPS15 350158 sc-eQTL 7.76e-01 -0.0607 0.213 0.059 pDC L2
ENSG00000116157 GPX7 -732947 sc-eQTL 5.91e-01 -0.0864 0.16 0.059 pDC L2
ENSG00000117859 OSBPL9 292245 sc-eQTL 3.69e-01 -0.186 0.207 0.059 pDC L2
ENSG00000117862 TXNDC12 -186747 sc-eQTL 5.87e-01 -0.113 0.207 0.059 pDC L2
ENSG00000123080 CDKN2C 908679 sc-eQTL 9.53e-01 0.0105 0.177 0.059 pDC L2
ENSG00000123091 RNF11 633151 sc-eQTL 5.36e-01 0.0953 0.153 0.059 pDC L2
ENSG00000134717 BTF3L4 -186775 sc-eQTL 4.25e-01 -0.162 0.203 0.059 pDC L2
ENSG00000134744 TUT4 -684063 sc-eQTL 6.68e-01 -0.0742 0.173 0.059 pDC L2
ENSG00000134748 PRPF38A -535178 sc-eQTL 6.31e-01 0.107 0.222 0.059 pDC L2
ENSG00000154222 CC2D1B -496769 sc-eQTL 5.44e-01 -0.128 0.211 0.059 pDC L2
ENSG00000162377 COA7 -828923 sc-eQTL 4.05e-01 0.143 0.171 0.059 pDC L2
ENSG00000162378 ZYG11B -857029 sc-eQTL 8.94e-01 0.0276 0.206 0.059 pDC L2
ENSG00000185104 FAF1 909157 sc-eQTL 1.92e-01 0.275 0.21 0.059 pDC L2
ENSG00000198841 KTI12 -164386 sc-eQTL 2.85e-01 0.21 0.196 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC -9513 eQTL 2.39e-10 -0.12 0.0187 0.00193 0.0281 0.0407
ENSG00000085831 TTC39A 524308 eQTL 0.0303 -0.128 0.0592 0.00156 0.0 0.0407
ENSG00000116157 GPX7 -732947 eQTL 0.141 0.09 0.061 0.00119 0.0 0.0407
ENSG00000134717 BTF3L4 -186775 eQTL 1.40e-02 -0.0801 0.0325 0.00198 0.0 0.0407
ENSG00000134748 PRPF38A -535178 eQTL 3.01e-02 0.1 0.0462 0.0014 0.0 0.0407
ENSG00000154222 CC2D1B -496769 eQTL 1.92e-09 0.255 0.0421 0.0 0.0 0.0407
ENSG00000182183 SHISAL2A -763744 eQTL 0.0127 0.104 0.0417 0.0 0.0 0.0407
ENSG00000185104 FAF1 909157 eQTL 0.0231 0.0768 0.0338 0.00175 0.0 0.0407
ENSG00000266993 AL050343.1 75490 eQTL 1.76e-07 -0.276 0.0524 0.0115 0.0102 0.0407

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC -9513 3.63e-05 3.34e-05 6.49e-06 1.6e-05 6.33e-06 1.54e-05 4.74e-05 5.4e-06 3.47e-05 1.69e-05 4.33e-05 1.95e-05 5.08e-05 1.54e-05 7.14e-06 2.2e-05 1.92e-05 2.76e-05 8.23e-06 7.09e-06 1.71e-05 3.53e-05 3.42e-05 9.89e-06 5.22e-05 8.89e-06 1.65e-05 1.39e-05 3.36e-05 2.81e-05 2.3e-05 1.69e-06 2.9e-06 7.48e-06 1.3e-05 5.99e-06 3.48e-06 3.23e-06 5.26e-06 3.57e-06 1.78e-06 3.94e-05 3.8e-06 4.28e-07 2.79e-06 4.51e-06 4.42e-06 1.8e-06 1.53e-06
ENSG00000123091 \N 633151 4.21e-07 4.97e-07 7.97e-08 4.36e-07 1.05e-07 1.44e-07 4.68e-07 7.56e-08 2.78e-07 1.15e-07 5.73e-07 2.28e-07 6e-07 1.41e-07 1.27e-07 1.26e-07 9.3e-08 2.93e-07 9.71e-08 8.87e-08 1.52e-07 2.48e-07 2.48e-07 4.81e-08 5.75e-07 1.65e-07 1.72e-07 1.7e-07 1.47e-07 3.71e-07 2.43e-07 8.02e-08 3.51e-08 1.21e-07 3.07e-07 5.14e-08 1.1e-07 6.78e-08 5.98e-08 6.07e-08 4.68e-08 5.09e-07 1.21e-08 1.86e-08 3.61e-08 8.24e-09 7.61e-08 1.98e-09 4.88e-08
ENSG00000154222 CC2D1B -496769 8.85e-07 9.37e-07 1.58e-07 6.06e-07 1.12e-07 3.24e-07 7.32e-07 1.54e-07 7.85e-07 2.57e-07 1.15e-06 5.22e-07 1.3e-06 2.54e-07 3.56e-07 2.99e-07 5.27e-07 4.25e-07 2.79e-07 1.8e-07 2.5e-07 5.5e-07 4.4e-07 1.91e-07 1.52e-06 2.34e-07 3.93e-07 3.24e-07 4.06e-07 8.5e-07 4.61e-07 4.21e-08 4.98e-08 1.79e-07 3.42e-07 1.54e-07 2.83e-07 1.09e-07 8.61e-08 8.36e-09 9.77e-08 1.22e-06 7.37e-08 1.28e-08 1.19e-07 1.44e-08 7.36e-08 3.04e-09 4.67e-08
ENSG00000228929 \N -903224 2.67e-07 1.56e-07 5.03e-08 2.41e-07 1.01e-07 9.05e-08 1.9e-07 5.43e-08 1.5e-07 5.42e-08 1.66e-07 1.08e-07 2.05e-07 8.15e-08 5.98e-08 7.49e-08 4.01e-08 1.44e-07 6.32e-08 4.31e-08 1.22e-07 1.25e-07 1.5e-07 2.93e-08 1.72e-07 1.14e-07 1.1e-07 9.92e-08 1.12e-07 1.05e-07 1.09e-07 2.99e-08 2.92e-08 8.89e-08 3.36e-08 3.28e-08 4.43e-08 9.3e-08 6.58e-08 3.99e-08 5.42e-08 1.59e-07 5.24e-08 7.39e-09 5.19e-08 1.87e-08 1.19e-07 3.95e-09 4.91e-08
ENSG00000232846 \N 160362 5.65e-06 9.03e-06 1.05e-06 4.25e-06 1.49e-06 2.03e-06 8.88e-06 1.34e-06 5.68e-06 3.34e-06 8.8e-06 3.84e-06 1.1e-05 3.56e-06 1.2e-06 4.87e-06 3.59e-06 3.79e-06 1.65e-06 1.6e-06 2.85e-06 7.11e-06 5.31e-06 1.91e-06 1.19e-05 2.16e-06 3.64e-06 1.71e-06 6.07e-06 7.05e-06 4.07e-06 7.86e-07 6.52e-07 2.26e-06 3.16e-06 1.39e-06 1.03e-06 7.41e-07 9.04e-07 6.24e-07 7.18e-07 9.18e-06 8.57e-07 1.58e-07 7.84e-07 1.06e-06 1.08e-06 6.58e-07 4.54e-07
ENSG00000266993 AL050343.1 75490 1.25e-05 1.52e-05 2.5e-06 8.95e-06 2.4e-06 6.16e-06 1.87e-05 2.99e-06 1.45e-05 6.68e-06 1.84e-05 7.45e-06 2.39e-05 5.77e-06 4.05e-06 9.17e-06 7.73e-06 1.2e-05 3.54e-06 3.3e-06 6.51e-06 1.28e-05 1.37e-05 4.06e-06 2.89e-05 4.58e-06 7.6e-06 5.26e-06 1.47e-05 1.21e-05 1.03e-05 1.12e-06 1.19e-06 3.74e-06 7.03e-06 2.85e-06 1.76e-06 2.26e-06 2.14e-06 1.26e-06 1.12e-06 1.85e-05 2.06e-06 3.62e-07 1.07e-06 2.02e-06 2.03e-06 7.25e-07 5.68e-07