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Genes within 1Mb (chr1:51865366:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -13571 sc-eQTL 6.33e-02 -0.432 0.231 0.051 B_Activated L2
ENSG00000085832 EPS15 346100 sc-eQTL 4.60e-01 0.164 0.221 0.051 B_Activated L2
ENSG00000116157 GPX7 -737005 sc-eQTL 1.01e-01 0.35 0.212 0.051 B_Activated L2
ENSG00000117859 OSBPL9 288187 sc-eQTL 2.54e-01 0.263 0.229 0.051 B_Activated L2
ENSG00000117862 TXNDC12 -190805 sc-eQTL 6.34e-01 0.104 0.219 0.051 B_Activated L2
ENSG00000123080 CDKN2C 904621 sc-eQTL 7.38e-01 0.0562 0.168 0.051 B_Activated L2
ENSG00000123091 RNF11 629093 sc-eQTL 1.01e-01 -0.34 0.206 0.051 B_Activated L2
ENSG00000134717 BTF3L4 -190833 sc-eQTL 5.77e-01 0.129 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 -688121 sc-eQTL 8.78e-01 0.033 0.215 0.051 B_Activated L2
ENSG00000134748 PRPF38A -539236 sc-eQTL 1.98e-01 -0.28 0.216 0.051 B_Activated L2
ENSG00000154222 CC2D1B -500827 sc-eQTL 8.35e-01 -0.0443 0.212 0.051 B_Activated L2
ENSG00000162377 COA7 -832981 sc-eQTL 7.50e-01 0.0577 0.181 0.051 B_Activated L2
ENSG00000162378 ZYG11B -861087 sc-eQTL 5.29e-01 0.14 0.221 0.051 B_Activated L2
ENSG00000182183 SHISAL2A -767802 sc-eQTL 2.74e-01 0.213 0.194 0.051 B_Activated L2
ENSG00000185104 FAF1 905099 sc-eQTL 5.43e-01 -0.127 0.209 0.051 B_Activated L2
ENSG00000198841 KTI12 -168444 sc-eQTL 7.74e-01 0.0534 0.186 0.051 B_Activated L2
ENSG00000078618 NRDC -13571 sc-eQTL 8.96e-02 -0.359 0.21 0.05 CD4_CTL L2
ENSG00000085832 EPS15 346100 sc-eQTL 4.56e-01 -0.14 0.188 0.05 CD4_CTL L2
ENSG00000116157 GPX7 -737005 sc-eQTL 9.16e-01 0.0219 0.208 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 288187 sc-eQTL 2.56e-01 -0.248 0.218 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -190805 sc-eQTL 2.25e-01 0.248 0.204 0.05 CD4_CTL L2
ENSG00000123080 CDKN2C 904621 sc-eQTL 1.20e-01 -0.325 0.209 0.05 CD4_CTL L2
ENSG00000123091 RNF11 629093 sc-eQTL 4.90e-01 0.137 0.198 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -190833 sc-eQTL 2.03e-01 0.264 0.207 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -688121 sc-eQTL 3.71e-01 -0.175 0.196 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -539236 sc-eQTL 4.53e-02 0.416 0.206 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -500827 sc-eQTL 8.44e-01 0.041 0.208 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -276728 sc-eQTL 4.93e-01 -0.131 0.191 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -861087 sc-eQTL 2.54e-01 0.234 0.204 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A -767802 sc-eQTL 4.52e-01 0.14 0.185 0.05 CD4_CTL L2
ENSG00000185104 FAF1 905099 sc-eQTL 5.20e-01 -0.114 0.177 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -168444 sc-eQTL 1.88e-01 -0.264 0.2 0.05 CD4_CTL L2
ENSG00000078618 NRDC -13571 sc-eQTL 8.52e-01 -0.0384 0.206 0.051 CD8_TCM L2
ENSG00000085832 EPS15 346100 sc-eQTL 6.11e-01 -0.104 0.203 0.051 CD8_TCM L2
ENSG00000116157 GPX7 -737005 sc-eQTL 1.05e-02 0.554 0.214 0.051 CD8_TCM L2
ENSG00000117859 OSBPL9 288187 sc-eQTL 9.63e-01 0.0102 0.221 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 -190805 sc-eQTL 8.02e-01 0.0502 0.2 0.051 CD8_TCM L2
ENSG00000123080 CDKN2C 904621 sc-eQTL 2.14e-01 -0.244 0.196 0.051 CD8_TCM L2
ENSG00000123091 RNF11 629093 sc-eQTL 1.65e-01 0.285 0.204 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 -190833 sc-eQTL 4.59e-01 0.151 0.204 0.051 CD8_TCM L2
ENSG00000134744 TUT4 -688121 sc-eQTL 5.37e-01 -0.124 0.2 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A -539236 sc-eQTL 8.73e-01 0.0319 0.199 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B -500827 sc-eQTL 6.26e-01 0.0975 0.2 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 -276728 sc-eQTL 4.63e-01 0.15 0.204 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -861087 sc-eQTL 3.52e-01 -0.186 0.2 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A -767802 sc-eQTL 4.02e-01 0.165 0.197 0.051 CD8_TCM L2
ENSG00000185104 FAF1 905099 sc-eQTL 2.67e-01 0.204 0.184 0.051 CD8_TCM L2
ENSG00000198841 KTI12 -168444 sc-eQTL 5.38e-01 0.129 0.21 0.051 CD8_TCM L2
ENSG00000078618 NRDC -13571 sc-eQTL 2.88e-01 -0.206 0.193 0.054 cDC L2
ENSG00000085831 TTC39A 520250 sc-eQTL 3.80e-01 -0.0555 0.0631 0.054 cDC L2
ENSG00000085832 EPS15 346100 sc-eQTL 1.74e-01 -0.293 0.215 0.054 cDC L2
ENSG00000116157 GPX7 -737005 sc-eQTL 1.48e-01 0.258 0.178 0.054 cDC L2
ENSG00000117859 OSBPL9 288187 sc-eQTL 4.83e-01 0.139 0.198 0.054 cDC L2
ENSG00000117862 TXNDC12 -190805 sc-eQTL 2.66e-01 0.21 0.188 0.054 cDC L2
ENSG00000123080 CDKN2C 904621 sc-eQTL 9.91e-01 -0.00234 0.204 0.054 cDC L2
ENSG00000123091 RNF11 629093 sc-eQTL 9.57e-01 -0.0115 0.211 0.054 cDC L2
ENSG00000134717 BTF3L4 -190833 sc-eQTL 9.27e-01 0.0175 0.191 0.054 cDC L2
ENSG00000134744 TUT4 -688121 sc-eQTL 8.83e-01 0.0312 0.212 0.054 cDC L2
ENSG00000134748 PRPF38A -539236 sc-eQTL 7.07e-01 -0.0736 0.195 0.054 cDC L2
ENSG00000154222 CC2D1B -500827 sc-eQTL 2.16e-01 0.263 0.212 0.054 cDC L2
ENSG00000162377 COA7 -832981 sc-eQTL 8.25e-01 0.0446 0.202 0.054 cDC L2
ENSG00000162378 ZYG11B -861087 sc-eQTL 7.90e-01 0.0567 0.212 0.054 cDC L2
ENSG00000185104 FAF1 905099 sc-eQTL 3.76e-02 -0.394 0.188 0.054 cDC L2
ENSG00000198841 KTI12 -168444 sc-eQTL 1.38e-01 0.296 0.199 0.054 cDC L2
ENSG00000078618 NRDC -13571 sc-eQTL 1.92e-01 -0.224 0.171 0.059 pDC L2
ENSG00000085831 TTC39A 520250 sc-eQTL 7.43e-01 0.0545 0.166 0.059 pDC L2
ENSG00000085832 EPS15 346100 sc-eQTL 7.76e-01 -0.0607 0.213 0.059 pDC L2
ENSG00000116157 GPX7 -737005 sc-eQTL 5.91e-01 -0.0864 0.16 0.059 pDC L2
ENSG00000117859 OSBPL9 288187 sc-eQTL 3.69e-01 -0.186 0.207 0.059 pDC L2
ENSG00000117862 TXNDC12 -190805 sc-eQTL 5.87e-01 -0.113 0.207 0.059 pDC L2
ENSG00000123080 CDKN2C 904621 sc-eQTL 9.53e-01 0.0105 0.177 0.059 pDC L2
ENSG00000123091 RNF11 629093 sc-eQTL 5.36e-01 0.0953 0.153 0.059 pDC L2
ENSG00000134717 BTF3L4 -190833 sc-eQTL 4.25e-01 -0.162 0.203 0.059 pDC L2
ENSG00000134744 TUT4 -688121 sc-eQTL 6.68e-01 -0.0742 0.173 0.059 pDC L2
ENSG00000134748 PRPF38A -539236 sc-eQTL 6.31e-01 0.107 0.222 0.059 pDC L2
ENSG00000154222 CC2D1B -500827 sc-eQTL 5.44e-01 -0.128 0.211 0.059 pDC L2
ENSG00000162377 COA7 -832981 sc-eQTL 4.05e-01 0.143 0.171 0.059 pDC L2
ENSG00000162378 ZYG11B -861087 sc-eQTL 8.94e-01 0.0276 0.206 0.059 pDC L2
ENSG00000185104 FAF1 905099 sc-eQTL 1.92e-01 0.275 0.21 0.059 pDC L2
ENSG00000198841 KTI12 -168444 sc-eQTL 2.85e-01 0.21 0.196 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC -13571 eQTL 2.3e-10 -0.12 0.0187 0.00196 0.0292 0.0407
ENSG00000085831 TTC39A 520250 eQTL 0.0304 -0.128 0.0592 0.00155 0.0 0.0407
ENSG00000116157 GPX7 -737005 eQTL 0.139 0.0904 0.0611 0.00119 0.0 0.0407
ENSG00000134717 BTF3L4 -190833 eQTL 1.41e-02 -0.0801 0.0326 0.00197 0.0 0.0407
ENSG00000134748 PRPF38A -539236 eQTL 3.02e-02 0.1 0.0462 0.0014 0.0 0.0407
ENSG00000154222 CC2D1B -500827 eQTL 1.85e-09 0.256 0.0422 0.0 0.0 0.0407
ENSG00000182183 SHISAL2A -767802 eQTL 0.0128 0.104 0.0417 0.0 0.0 0.0407
ENSG00000185104 FAF1 905099 eQTL 0.0229 0.077 0.0338 0.00175 0.0 0.0407
ENSG00000266993 AL050343.1 71432 eQTL 1.74e-07 -0.276 0.0525 0.0115 0.0103 0.0407

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC -13571 3.27e-05 2.99e-05 5.6e-06 1.47e-05 5.23e-06 1.28e-05 3.87e-05 4.28e-06 2.76e-05 1.45e-05 3.59e-05 1.44e-05 4.46e-05 1.27e-05 6.84e-06 1.7e-05 1.44e-05 2.23e-05 7.51e-06 6.18e-06 1.38e-05 2.99e-05 2.82e-05 8.06e-06 3.96e-05 7.34e-06 1.28e-05 1.18e-05 2.89e-05 2.19e-05 1.87e-05 1.58e-06 2.41e-06 6.67e-06 1.06e-05 4.91e-06 2.83e-06 3.16e-06 4.43e-06 3.3e-06 1.7e-06 3.61e-05 3.21e-06 3.57e-07 2.19e-06 3.75e-06 3.88e-06 1.53e-06 1.57e-06
ENSG00000116157 GPX7 -737005 2.76e-07 1.35e-07 5.49e-08 1.97e-07 9.87e-08 8.33e-08 1.6e-07 5.43e-08 1.45e-07 6.4e-08 1.57e-07 1.01e-07 1.59e-07 7.64e-08 5.82e-08 7.49e-08 4.12e-08 1.4e-07 6.92e-08 5.04e-08 1.25e-07 1.25e-07 1.5e-07 2.91e-08 1.63e-07 1.25e-07 1.18e-07 1.06e-07 1.23e-07 1e-07 1.06e-07 3.66e-08 3.51e-08 8.11e-08 3.81e-08 3.04e-08 5.42e-08 8.2e-08 6.57e-08 3.82e-08 5.3e-08 1.4e-07 5.39e-08 1.11e-08 3.2e-08 1.01e-08 1e-07 1.93e-09 4.99e-08
ENSG00000154222 CC2D1B -500827 4.89e-07 2.89e-07 7.72e-08 2.66e-07 1.07e-07 1.57e-07 3.42e-07 8.11e-08 2.38e-07 1.7e-07 3.21e-07 2.04e-07 4.05e-07 9.18e-08 1.26e-07 1.14e-07 8.74e-08 2.83e-07 1.27e-07 8.1e-08 1.57e-07 2.48e-07 2.33e-07 5.11e-08 3.55e-07 1.9e-07 1.78e-07 1.95e-07 1.76e-07 2.01e-07 1.78e-07 7.6e-08 5.41e-08 9.09e-08 1.95e-07 4.95e-08 8.75e-08 7.86e-08 4.9e-08 7.53e-08 3.2e-08 2.41e-07 1.96e-08 1.8e-08 8.59e-08 1.95e-08 9.52e-08 2.94e-09 4.74e-08
ENSG00000228929 \N -907282 2.69e-07 1.19e-07 3.88e-08 1.8e-07 9.16e-08 9.8e-08 1.44e-07 5.37e-08 1.44e-07 4.94e-08 1.6e-07 8.59e-08 1.41e-07 6.56e-08 6.02e-08 7.17e-08 3.98e-08 1.21e-07 5.82e-08 4.1e-08 1.13e-07 1.28e-07 1.34e-07 3.68e-08 1.37e-07 1.14e-07 1.07e-07 9.61e-08 1.05e-07 1.1e-07 9.64e-08 3.06e-08 3.56e-08 8.49e-08 7.66e-08 3.93e-08 5.04e-08 8.63e-08 6.55e-08 3.98e-08 4.88e-08 1.33e-07 5.22e-08 1.55e-08 4.92e-08 1.87e-08 1.21e-07 3.78e-09 4.94e-08
ENSG00000266993 AL050343.1 71432 8.57e-06 9.74e-06 1.36e-06 5e-06 2.35e-06 3.93e-06 1.03e-05 1.79e-06 8.75e-06 5.05e-06 1.21e-05 4.93e-06 1.34e-05 3.87e-06 2.82e-06 6.49e-06 3.83e-06 5.6e-06 2.55e-06 2.68e-06 4.94e-06 9.61e-06 7.15e-06 2.8e-06 1.31e-05 3.04e-06 4.74e-06 3.96e-06 8.7e-06 7.65e-06 5.06e-06 7.85e-07 1.1e-06 2.86e-06 3.88e-06 2.11e-06 1.44e-06 1.86e-06 1.39e-06 1.02e-06 8.4e-07 1.25e-05 1.29e-06 1.56e-07 6.87e-07 1.77e-06 1.3e-06 7.2e-07 4.78e-07