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Genes within 1Mb (chr1:51856989:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -21948 sc-eQTL 6.33e-02 -0.432 0.231 0.051 B_Activated L2
ENSG00000085832 EPS15 337723 sc-eQTL 4.60e-01 0.164 0.221 0.051 B_Activated L2
ENSG00000116157 GPX7 -745382 sc-eQTL 1.01e-01 0.35 0.212 0.051 B_Activated L2
ENSG00000117859 OSBPL9 279810 sc-eQTL 2.54e-01 0.263 0.229 0.051 B_Activated L2
ENSG00000117862 TXNDC12 -199182 sc-eQTL 6.34e-01 0.104 0.219 0.051 B_Activated L2
ENSG00000123080 CDKN2C 896244 sc-eQTL 7.38e-01 0.0562 0.168 0.051 B_Activated L2
ENSG00000123091 RNF11 620716 sc-eQTL 1.01e-01 -0.34 0.206 0.051 B_Activated L2
ENSG00000134717 BTF3L4 -199210 sc-eQTL 5.77e-01 0.129 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 -696498 sc-eQTL 8.78e-01 0.033 0.215 0.051 B_Activated L2
ENSG00000134748 PRPF38A -547613 sc-eQTL 1.98e-01 -0.28 0.216 0.051 B_Activated L2
ENSG00000154222 CC2D1B -509204 sc-eQTL 8.35e-01 -0.0443 0.212 0.051 B_Activated L2
ENSG00000162377 COA7 -841358 sc-eQTL 7.50e-01 0.0577 0.181 0.051 B_Activated L2
ENSG00000162378 ZYG11B -869464 sc-eQTL 5.29e-01 0.14 0.221 0.051 B_Activated L2
ENSG00000182183 SHISAL2A -776179 sc-eQTL 2.74e-01 0.213 0.194 0.051 B_Activated L2
ENSG00000185104 FAF1 896722 sc-eQTL 5.43e-01 -0.127 0.209 0.051 B_Activated L2
ENSG00000198841 KTI12 -176821 sc-eQTL 7.74e-01 0.0534 0.186 0.051 B_Activated L2
ENSG00000078618 NRDC -21948 sc-eQTL 8.96e-02 -0.359 0.21 0.05 CD4_CTL L2
ENSG00000085832 EPS15 337723 sc-eQTL 4.56e-01 -0.14 0.188 0.05 CD4_CTL L2
ENSG00000116157 GPX7 -745382 sc-eQTL 9.16e-01 0.0219 0.208 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 279810 sc-eQTL 2.56e-01 -0.248 0.218 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -199182 sc-eQTL 2.25e-01 0.248 0.204 0.05 CD4_CTL L2
ENSG00000123080 CDKN2C 896244 sc-eQTL 1.20e-01 -0.325 0.209 0.05 CD4_CTL L2
ENSG00000123091 RNF11 620716 sc-eQTL 4.90e-01 0.137 0.198 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -199210 sc-eQTL 2.03e-01 0.264 0.207 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -696498 sc-eQTL 3.71e-01 -0.175 0.196 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -547613 sc-eQTL 4.53e-02 0.416 0.206 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -509204 sc-eQTL 8.44e-01 0.041 0.208 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -285105 sc-eQTL 4.93e-01 -0.131 0.191 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -869464 sc-eQTL 2.54e-01 0.234 0.204 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A -776179 sc-eQTL 4.52e-01 0.14 0.185 0.05 CD4_CTL L2
ENSG00000185104 FAF1 896722 sc-eQTL 5.20e-01 -0.114 0.177 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -176821 sc-eQTL 1.88e-01 -0.264 0.2 0.05 CD4_CTL L2
ENSG00000078618 NRDC -21948 sc-eQTL 8.52e-01 -0.0384 0.206 0.051 CD8_TCM L2
ENSG00000085832 EPS15 337723 sc-eQTL 6.11e-01 -0.104 0.203 0.051 CD8_TCM L2
ENSG00000116157 GPX7 -745382 sc-eQTL 1.05e-02 0.554 0.214 0.051 CD8_TCM L2
ENSG00000117859 OSBPL9 279810 sc-eQTL 9.63e-01 0.0102 0.221 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 -199182 sc-eQTL 8.02e-01 0.0502 0.2 0.051 CD8_TCM L2
ENSG00000123080 CDKN2C 896244 sc-eQTL 2.14e-01 -0.244 0.196 0.051 CD8_TCM L2
ENSG00000123091 RNF11 620716 sc-eQTL 1.65e-01 0.285 0.204 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 -199210 sc-eQTL 4.59e-01 0.151 0.204 0.051 CD8_TCM L2
ENSG00000134744 TUT4 -696498 sc-eQTL 5.37e-01 -0.124 0.2 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A -547613 sc-eQTL 8.73e-01 0.0319 0.199 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B -509204 sc-eQTL 6.26e-01 0.0975 0.2 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 -285105 sc-eQTL 4.63e-01 0.15 0.204 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -869464 sc-eQTL 3.52e-01 -0.186 0.2 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A -776179 sc-eQTL 4.02e-01 0.165 0.197 0.051 CD8_TCM L2
ENSG00000185104 FAF1 896722 sc-eQTL 2.67e-01 0.204 0.184 0.051 CD8_TCM L2
ENSG00000198841 KTI12 -176821 sc-eQTL 5.38e-01 0.129 0.21 0.051 CD8_TCM L2
ENSG00000078618 NRDC -21948 sc-eQTL 2.88e-01 -0.206 0.193 0.054 cDC L2
ENSG00000085831 TTC39A 511873 sc-eQTL 3.80e-01 -0.0555 0.0631 0.054 cDC L2
ENSG00000085832 EPS15 337723 sc-eQTL 1.74e-01 -0.293 0.215 0.054 cDC L2
ENSG00000116157 GPX7 -745382 sc-eQTL 1.48e-01 0.258 0.178 0.054 cDC L2
ENSG00000117859 OSBPL9 279810 sc-eQTL 4.83e-01 0.139 0.198 0.054 cDC L2
ENSG00000117862 TXNDC12 -199182 sc-eQTL 2.66e-01 0.21 0.188 0.054 cDC L2
ENSG00000123080 CDKN2C 896244 sc-eQTL 9.91e-01 -0.00234 0.204 0.054 cDC L2
ENSG00000123091 RNF11 620716 sc-eQTL 9.57e-01 -0.0115 0.211 0.054 cDC L2
ENSG00000134717 BTF3L4 -199210 sc-eQTL 9.27e-01 0.0175 0.191 0.054 cDC L2
ENSG00000134744 TUT4 -696498 sc-eQTL 8.83e-01 0.0312 0.212 0.054 cDC L2
ENSG00000134748 PRPF38A -547613 sc-eQTL 7.07e-01 -0.0736 0.195 0.054 cDC L2
ENSG00000154222 CC2D1B -509204 sc-eQTL 2.16e-01 0.263 0.212 0.054 cDC L2
ENSG00000162377 COA7 -841358 sc-eQTL 8.25e-01 0.0446 0.202 0.054 cDC L2
ENSG00000162378 ZYG11B -869464 sc-eQTL 7.90e-01 0.0567 0.212 0.054 cDC L2
ENSG00000185104 FAF1 896722 sc-eQTL 3.76e-02 -0.394 0.188 0.054 cDC L2
ENSG00000198841 KTI12 -176821 sc-eQTL 1.38e-01 0.296 0.199 0.054 cDC L2
ENSG00000078618 NRDC -21948 sc-eQTL 1.92e-01 -0.224 0.171 0.059 pDC L2
ENSG00000085831 TTC39A 511873 sc-eQTL 7.43e-01 0.0545 0.166 0.059 pDC L2
ENSG00000085832 EPS15 337723 sc-eQTL 7.76e-01 -0.0607 0.213 0.059 pDC L2
ENSG00000116157 GPX7 -745382 sc-eQTL 5.91e-01 -0.0864 0.16 0.059 pDC L2
ENSG00000117859 OSBPL9 279810 sc-eQTL 3.69e-01 -0.186 0.207 0.059 pDC L2
ENSG00000117862 TXNDC12 -199182 sc-eQTL 5.87e-01 -0.113 0.207 0.059 pDC L2
ENSG00000123080 CDKN2C 896244 sc-eQTL 9.53e-01 0.0105 0.177 0.059 pDC L2
ENSG00000123091 RNF11 620716 sc-eQTL 5.36e-01 0.0953 0.153 0.059 pDC L2
ENSG00000134717 BTF3L4 -199210 sc-eQTL 4.25e-01 -0.162 0.203 0.059 pDC L2
ENSG00000134744 TUT4 -696498 sc-eQTL 6.68e-01 -0.0742 0.173 0.059 pDC L2
ENSG00000134748 PRPF38A -547613 sc-eQTL 6.31e-01 0.107 0.222 0.059 pDC L2
ENSG00000154222 CC2D1B -509204 sc-eQTL 5.44e-01 -0.128 0.211 0.059 pDC L2
ENSG00000162377 COA7 -841358 sc-eQTL 4.05e-01 0.143 0.171 0.059 pDC L2
ENSG00000162378 ZYG11B -869464 sc-eQTL 8.94e-01 0.0276 0.206 0.059 pDC L2
ENSG00000185104 FAF1 896722 sc-eQTL 1.92e-01 0.275 0.21 0.059 pDC L2
ENSG00000198841 KTI12 -176821 sc-eQTL 2.85e-01 0.21 0.196 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC -21948 eQTL 2.37e-10 -0.12 0.0187 0.00194 0.0284 0.0407
ENSG00000085831 TTC39A 511873 eQTL 0.0306 -0.128 0.0592 0.00155 0.0 0.0407
ENSG00000116157 GPX7 -745382 eQTL 0.142 0.0898 0.061 0.0012 0.0 0.0407
ENSG00000134717 BTF3L4 -199210 eQTL 1.41e-02 -0.08 0.0325 0.00197 0.0 0.0407
ENSG00000134748 PRPF38A -547613 eQTL 3.04e-02 0.1 0.0462 0.00139 0.0 0.0407
ENSG00000154222 CC2D1B -509204 eQTL 1.91e-09 0.256 0.0421 0.0 0.0 0.0407
ENSG00000182183 SHISAL2A -776179 eQTL 0.0124 0.104 0.0417 0.0 0.0 0.0407
ENSG00000185104 FAF1 896722 eQTL 0.0229 0.0769 0.0338 0.00175 0.0 0.0407
ENSG00000266993 AL050343.1 63055 eQTL 1.77e-07 -0.276 0.0524 0.0114 0.0102 0.0407

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina