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Genes within 1Mb (chr1:51801261:CT:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -77676 sc-eQTL 6.33e-02 0.432 0.231 0.949 B_Activated L2
ENSG00000085832 EPS15 281995 sc-eQTL 4.60e-01 -0.164 0.221 0.949 B_Activated L2
ENSG00000116157 GPX7 -801110 sc-eQTL 1.01e-01 -0.35 0.212 0.949 B_Activated L2
ENSG00000117859 OSBPL9 224082 sc-eQTL 2.54e-01 -0.263 0.229 0.949 B_Activated L2
ENSG00000117862 TXNDC12 -254910 sc-eQTL 6.34e-01 -0.104 0.219 0.949 B_Activated L2
ENSG00000123080 CDKN2C 840516 sc-eQTL 7.38e-01 -0.0562 0.168 0.949 B_Activated L2
ENSG00000123091 RNF11 564988 sc-eQTL 1.01e-01 0.34 0.206 0.949 B_Activated L2
ENSG00000134717 BTF3L4 -254938 sc-eQTL 5.77e-01 -0.129 0.231 0.949 B_Activated L2
ENSG00000134744 TUT4 -752226 sc-eQTL 8.78e-01 -0.033 0.215 0.949 B_Activated L2
ENSG00000134748 PRPF38A -603341 sc-eQTL 1.98e-01 0.28 0.216 0.949 B_Activated L2
ENSG00000154222 CC2D1B -564932 sc-eQTL 8.35e-01 0.0443 0.212 0.949 B_Activated L2
ENSG00000162377 COA7 -897086 sc-eQTL 7.50e-01 -0.0577 0.181 0.949 B_Activated L2
ENSG00000162378 ZYG11B -925192 sc-eQTL 5.29e-01 -0.14 0.221 0.949 B_Activated L2
ENSG00000182183 SHISAL2A -831907 sc-eQTL 2.74e-01 -0.213 0.194 0.949 B_Activated L2
ENSG00000185104 FAF1 840994 sc-eQTL 5.43e-01 0.127 0.209 0.949 B_Activated L2
ENSG00000198841 KTI12 -232549 sc-eQTL 7.74e-01 -0.0534 0.186 0.949 B_Activated L2
ENSG00000078618 NRDC -77676 sc-eQTL 8.96e-02 0.359 0.21 0.95 CD4_CTL L2
ENSG00000085832 EPS15 281995 sc-eQTL 4.56e-01 0.14 0.188 0.95 CD4_CTL L2
ENSG00000116157 GPX7 -801110 sc-eQTL 9.16e-01 -0.0219 0.208 0.95 CD4_CTL L2
ENSG00000117859 OSBPL9 224082 sc-eQTL 2.56e-01 0.248 0.218 0.95 CD4_CTL L2
ENSG00000117862 TXNDC12 -254910 sc-eQTL 2.25e-01 -0.248 0.204 0.95 CD4_CTL L2
ENSG00000123080 CDKN2C 840516 sc-eQTL 1.20e-01 0.325 0.209 0.95 CD4_CTL L2
ENSG00000123091 RNF11 564988 sc-eQTL 4.90e-01 -0.137 0.198 0.95 CD4_CTL L2
ENSG00000134717 BTF3L4 -254938 sc-eQTL 2.03e-01 -0.264 0.207 0.95 CD4_CTL L2
ENSG00000134744 TUT4 -752226 sc-eQTL 3.71e-01 0.175 0.196 0.95 CD4_CTL L2
ENSG00000134748 PRPF38A -603341 sc-eQTL 4.53e-02 -0.416 0.206 0.95 CD4_CTL L2
ENSG00000154222 CC2D1B -564932 sc-eQTL 8.44e-01 -0.041 0.208 0.95 CD4_CTL L2
ENSG00000157077 ZFYVE9 -340833 sc-eQTL 4.93e-01 0.131 0.191 0.95 CD4_CTL L2
ENSG00000162378 ZYG11B -925192 sc-eQTL 2.54e-01 -0.234 0.204 0.95 CD4_CTL L2
ENSG00000182183 SHISAL2A -831907 sc-eQTL 4.52e-01 -0.14 0.185 0.95 CD4_CTL L2
ENSG00000185104 FAF1 840994 sc-eQTL 5.20e-01 0.114 0.177 0.95 CD4_CTL L2
ENSG00000198841 KTI12 -232549 sc-eQTL 1.88e-01 0.264 0.2 0.95 CD4_CTL L2
ENSG00000078618 NRDC -77676 sc-eQTL 8.52e-01 0.0384 0.206 0.949 CD8_TCM L2
ENSG00000085832 EPS15 281995 sc-eQTL 6.11e-01 0.104 0.203 0.949 CD8_TCM L2
ENSG00000116157 GPX7 -801110 sc-eQTL 1.05e-02 -0.554 0.214 0.949 CD8_TCM L2
ENSG00000117859 OSBPL9 224082 sc-eQTL 9.63e-01 -0.0102 0.221 0.949 CD8_TCM L2
ENSG00000117862 TXNDC12 -254910 sc-eQTL 8.02e-01 -0.0502 0.2 0.949 CD8_TCM L2
ENSG00000123080 CDKN2C 840516 sc-eQTL 2.14e-01 0.244 0.196 0.949 CD8_TCM L2
ENSG00000123091 RNF11 564988 sc-eQTL 1.65e-01 -0.285 0.204 0.949 CD8_TCM L2
ENSG00000134717 BTF3L4 -254938 sc-eQTL 4.59e-01 -0.151 0.204 0.949 CD8_TCM L2
ENSG00000134744 TUT4 -752226 sc-eQTL 5.37e-01 0.124 0.2 0.949 CD8_TCM L2
ENSG00000134748 PRPF38A -603341 sc-eQTL 8.73e-01 -0.0319 0.199 0.949 CD8_TCM L2
ENSG00000154222 CC2D1B -564932 sc-eQTL 6.26e-01 -0.0975 0.2 0.949 CD8_TCM L2
ENSG00000157077 ZFYVE9 -340833 sc-eQTL 4.63e-01 -0.15 0.204 0.949 CD8_TCM L2
ENSG00000162378 ZYG11B -925192 sc-eQTL 3.52e-01 0.186 0.2 0.949 CD8_TCM L2
ENSG00000182183 SHISAL2A -831907 sc-eQTL 4.02e-01 -0.165 0.197 0.949 CD8_TCM L2
ENSG00000185104 FAF1 840994 sc-eQTL 2.67e-01 -0.204 0.184 0.949 CD8_TCM L2
ENSG00000198841 KTI12 -232549 sc-eQTL 5.38e-01 -0.129 0.21 0.949 CD8_TCM L2
ENSG00000078618 NRDC -77676 sc-eQTL 2.88e-01 0.206 0.193 0.946 cDC L2
ENSG00000085831 TTC39A 456145 sc-eQTL 3.80e-01 0.0555 0.0631 0.946 cDC L2
ENSG00000085832 EPS15 281995 sc-eQTL 1.74e-01 0.293 0.215 0.946 cDC L2
ENSG00000116157 GPX7 -801110 sc-eQTL 1.48e-01 -0.258 0.178 0.946 cDC L2
ENSG00000117859 OSBPL9 224082 sc-eQTL 4.83e-01 -0.139 0.198 0.946 cDC L2
ENSG00000117862 TXNDC12 -254910 sc-eQTL 2.66e-01 -0.21 0.188 0.946 cDC L2
ENSG00000123080 CDKN2C 840516 sc-eQTL 9.91e-01 0.00234 0.204 0.946 cDC L2
ENSG00000123091 RNF11 564988 sc-eQTL 9.57e-01 0.0115 0.211 0.946 cDC L2
ENSG00000134717 BTF3L4 -254938 sc-eQTL 9.27e-01 -0.0175 0.191 0.946 cDC L2
ENSG00000134744 TUT4 -752226 sc-eQTL 8.83e-01 -0.0312 0.212 0.946 cDC L2
ENSG00000134748 PRPF38A -603341 sc-eQTL 7.07e-01 0.0736 0.195 0.946 cDC L2
ENSG00000154222 CC2D1B -564932 sc-eQTL 2.16e-01 -0.263 0.212 0.946 cDC L2
ENSG00000162377 COA7 -897086 sc-eQTL 8.25e-01 -0.0446 0.202 0.946 cDC L2
ENSG00000162378 ZYG11B -925192 sc-eQTL 7.90e-01 -0.0567 0.212 0.946 cDC L2
ENSG00000185104 FAF1 840994 sc-eQTL 3.76e-02 0.394 0.188 0.946 cDC L2
ENSG00000198841 KTI12 -232549 sc-eQTL 1.38e-01 -0.296 0.199 0.946 cDC L2
ENSG00000078618 NRDC -77676 sc-eQTL 1.92e-01 0.224 0.171 0.941 pDC L2
ENSG00000085831 TTC39A 456145 sc-eQTL 7.43e-01 -0.0545 0.166 0.941 pDC L2
ENSG00000085832 EPS15 281995 sc-eQTL 7.76e-01 0.0607 0.213 0.941 pDC L2
ENSG00000116157 GPX7 -801110 sc-eQTL 5.91e-01 0.0864 0.16 0.941 pDC L2
ENSG00000117859 OSBPL9 224082 sc-eQTL 3.69e-01 0.186 0.207 0.941 pDC L2
ENSG00000117862 TXNDC12 -254910 sc-eQTL 5.87e-01 0.113 0.207 0.941 pDC L2
ENSG00000123080 CDKN2C 840516 sc-eQTL 9.53e-01 -0.0105 0.177 0.941 pDC L2
ENSG00000123091 RNF11 564988 sc-eQTL 5.36e-01 -0.0953 0.153 0.941 pDC L2
ENSG00000134717 BTF3L4 -254938 sc-eQTL 4.25e-01 0.162 0.203 0.941 pDC L2
ENSG00000134744 TUT4 -752226 sc-eQTL 6.68e-01 0.0742 0.173 0.941 pDC L2
ENSG00000134748 PRPF38A -603341 sc-eQTL 6.31e-01 -0.107 0.222 0.941 pDC L2
ENSG00000154222 CC2D1B -564932 sc-eQTL 5.44e-01 0.128 0.211 0.941 pDC L2
ENSG00000162377 COA7 -897086 sc-eQTL 4.05e-01 -0.143 0.171 0.941 pDC L2
ENSG00000162378 ZYG11B -925192 sc-eQTL 8.94e-01 -0.0276 0.206 0.941 pDC L2
ENSG00000185104 FAF1 840994 sc-eQTL 1.92e-01 -0.275 0.21 0.941 pDC L2
ENSG00000198841 KTI12 -232549 sc-eQTL 2.85e-01 -0.21 0.196 0.941 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC -77676 eQTL 2.79e-10 0.12 0.0187 0.00223 0.0334 0.0412
ENSG00000085831 TTC39A 456145 eQTL 0.0172 0.142 0.0593 0.00184 0.0 0.0412
ENSG00000134717 BTF3L4 -254938 eQTL 7.53e-03 0.0872 0.0326 0.00251 0.00131 0.0412
ENSG00000134748 PRPF38A -603341 eQTL 3.66e-02 -0.0969 0.0463 0.00126 0.0 0.0412
ENSG00000154222 CC2D1B -564932 eQTL 6.82e-10 -0.263 0.0422 0.0 0.0 0.0412
ENSG00000182183 SHISAL2A -831907 eQTL 0.00805 -0.111 0.0418 0.0 0.0 0.0412
ENSG00000185104 FAF1 840994 eQTL 0.0259 -0.0755 0.0338 0.00167 0.0 0.0412
ENSG00000266993 AL050343.1 7327 eQTL 1.57e-07 0.278 0.0525 0.0133 0.0115 0.0412

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC -77676 8.84e-06 1.18e-05 2.86e-06 6.16e-06 1.87e-06 1.52e-06 1.07e-05 9.79e-07 6.51e-06 3.43e-06 8.8e-06 4.44e-06 1.3e-05 3.72e-06 2.39e-06 6.58e-06 4.74e-06 9.67e-06 2.02e-06 2.15e-06 4.98e-06 8.12e-06 7.23e-06 3.15e-06 1.25e-05 2.92e-06 3.99e-06 3.43e-06 7.44e-06 7.87e-06 3.46e-06 1.06e-06 1.25e-06 2.86e-06 2.92e-06 2.04e-06 1.82e-06 1.35e-06 1.94e-06 1.2e-06 6.35e-07 1.24e-05 2.52e-06 2.03e-07 6.97e-07 1.66e-06 1.8e-06 4.41e-07 4.23e-07
ENSG00000116157 \N -801110 3.62e-07 2.56e-07 2.1e-07 3.04e-07 1.07e-07 8.63e-08 3.7e-07 5.53e-08 1.89e-07 6.08e-08 3.47e-07 1.15e-07 4.11e-07 1.07e-07 6.12e-08 8.08e-08 2.48e-07 3.67e-07 8.68e-08 5.04e-08 1.59e-07 2.07e-07 1.73e-07 4.81e-08 3.41e-07 1.22e-07 1.22e-07 1.36e-07 1.32e-07 2.26e-07 1.39e-07 3.54e-08 3.51e-08 1.19e-07 2.85e-07 4.6e-08 1.05e-07 8.37e-08 5.8e-08 7.28e-08 5.42e-08 2.43e-07 3.14e-08 1.27e-08 3.36e-08 1.88e-08 1.2e-07 4.09e-09 5.09e-08
ENSG00000154222 CC2D1B -564932 7.76e-07 6.42e-07 2.9e-07 1e-06 1.05e-07 1.57e-07 6.54e-07 6.57e-08 3.66e-07 1.15e-07 9.92e-07 2.04e-07 9.79e-07 2.08e-07 7.35e-08 1.53e-07 7.7e-07 5.67e-07 2.51e-07 7.26e-08 2.49e-07 4.14e-07 3.04e-07 1.8e-07 1.02e-06 1.94e-07 2.22e-07 2.57e-07 2.31e-07 7.6e-07 2.83e-07 4.75e-08 4.86e-08 2.72e-07 3.18e-07 1.21e-07 4.21e-07 6.89e-08 6.29e-08 8.36e-09 5.59e-08 6.11e-07 6.44e-08 8.1e-08 9.15e-08 6.01e-08 9.38e-08 3.79e-09 5e-08
ENSG00000228929 \N -971387 2.95e-07 1.7e-07 1.02e-07 3.99e-07 1.03e-07 9.91e-08 2.4e-07 5.2e-08 1.5e-07 4.74e-08 1.86e-07 8.68e-08 2.38e-07 8.54e-08 6e-08 7.49e-08 6.81e-08 2.56e-07 7.16e-08 4.04e-08 1.24e-07 1.47e-07 1.58e-07 3.49e-08 2.02e-07 1.14e-07 1.1e-07 1.04e-07 1.2e-07 1.29e-07 1.09e-07 3.87e-08 3.61e-08 9.98e-08 1.07e-07 3.22e-08 6.48e-08 9.36e-08 6.41e-08 6.79e-08 3.59e-08 1.6e-07 4.83e-08 5.71e-09 3.83e-08 1.03e-08 1.22e-07 4.33e-09 4.91e-08
ENSG00000266993 AL050343.1 7327 6.05e-05 4.02e-05 6.79e-06 1.58e-05 5.94e-06 1.77e-05 5.35e-05 3.95e-06 3.36e-05 1.4e-05 4.33e-05 1.82e-05 5.48e-05 1.64e-05 7.05e-06 2.07e-05 2.01e-05 2.91e-05 8.04e-06 6.5e-06 1.69e-05 3.59e-05 3.89e-05 8.69e-06 4.78e-05 8.09e-06 1.44e-05 1.24e-05 4.02e-05 3.04e-05 2.2e-05 1.62e-06 2.29e-06 6.48e-06 1.27e-05 5.51e-06 2.77e-06 2.96e-06 3.98e-06 3.01e-06 1.64e-06 5.06e-05 4.94e-06 2.64e-07 2.7e-06 3.72e-06 4.07e-06 1.42e-06 1.57e-06