Genes within 1Mb (chr12:112372953:TTGCCA:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 530725 eQTL 2.95e-38 -0.193 0.0142 0.0 0.0 0.365
ENSG00000089169 RPH3A -197427 eQTL 1.12e-04 -0.12 0.0308 0.0 0.0 0.365
ENSG00000089234 BRAP 686997 pQTL 2.20e-03 -0.0461 0.015 0.00165 0.00161 0.374
ENSG00000089248 ERP29 359605 eQTL 1.72e-04 -0.0509 0.0135 0.0 0.0 0.365
ENSG00000111252 SH2B3 967005 pQTL 1.12e-04 -0.0574 0.0148 0.0 0.0 0.374
ENSG00000111271 ACAD10 686889 eQTL 3.45e-02 -0.0325 0.0153 0.0 0.0 0.365
ENSG00000111275 ALDH2 606066 pQTL 7.40e-07 -0.131 0.0264 0.0 0.0 0.374
ENSG00000111300 NAA25 264157 eQTL 4.88e-15 -0.0964 0.0121 0.0 0.0 0.365
ENSG00000111335 OAS2 -605442 eQTL 4.39e-03 0.0342 0.012 0.0 0.0 0.365
ENSG00000135148 TRAFD1 247408 eQTL 2.41e-02 -0.0241 0.0107 0.00126 0.0 0.365
ENSG00000173064 HECTD4 -9486 eQTL 5.17e-88 0.267 0.0121 0.0 0.0 0.365
ENSG00000179295 PTPN11 -45398 eQTL 4.83e-10 -0.0913 0.0145 0.0 0.0 0.365
ENSG00000204842 ATXN2 773277 eQTL 3.19e-05 0.0579 0.0138 0.0 0.0 0.365
ENSG00000213152 RPL7AP60 70290 eQTL 1.13e-05 -0.17 0.0385 0.00889 0.00811 0.365
ENSG00000234608 MAPKAPK5-AS1 530051 eQTL 1.25e-16 -0.111 0.0131 0.00133 0.0 0.365


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 530725 2.74e-07 1.16e-07 3.69e-08 1.78e-07 9.25e-08 1e-07 1.49e-07 5.21e-08 1.41e-07 4.24e-08 1.59e-07 8.03e-08 1.33e-07 6.07e-08 5.14e-08 7.26e-08 3.9e-08 1.21e-07 5.19e-08 3.29e-08 1.04e-07 1.27e-07 1.26e-07 4.99e-08 1.31e-07 1.19e-07 1.1e-07 8.71e-08 1.02e-07 1.12e-07 9.58e-08 3.52e-08 2.74e-08 8.21e-08 8.87e-08 3.87e-08 4.85e-08 9.26e-08 8.3e-08 3.12e-08 3.46e-08 1.31e-07 4.04e-08 1.52e-08 1.09e-07 1.83e-08 1.37e-07 4.5e-09 4.61e-08
ENSG00000089169 RPH3A -197427 1.57e-06 1.34e-06 2.88e-07 1.16e-06 8e-07 6.45e-07 1.31e-06 3.27e-07 1.48e-06 5.63e-07 2.02e-06 6.61e-07 2.68e-06 2.7e-07 4.49e-07 9.19e-07 1.01e-06 1.85e-06 7.14e-07 4.52e-07 6.58e-07 2e-06 1.1e-06 3.53e-07 2.25e-06 4.39e-07 6.03e-07 7.68e-07 1.23e-06 1.19e-06 7.03e-07 1.87e-07 8.37e-08 5.82e-07 6.86e-07 4.42e-07 7.5e-07 2.92e-07 3.76e-07 2.46e-07 3.64e-08 2.21e-06 3.5e-07 1.74e-07 9.64e-08 3.62e-07 1.97e-07 1.39e-07 1.25e-07
ENSG00000089248 ERP29 359605 8.43e-07 2.67e-07 8.51e-08 2.35e-07 1.09e-07 1.71e-07 5.28e-07 5.43e-08 1.98e-07 1.05e-07 3.21e-07 1.46e-07 5.81e-07 7.95e-08 5.72e-08 1.17e-07 1.69e-07 3.82e-07 8e-08 4.92e-08 1.48e-07 3.15e-07 2.04e-07 2.93e-08 4.11e-07 1.86e-07 1.12e-07 1.12e-07 1.34e-07 2.89e-07 1.26e-07 3.1e-08 3.59e-08 1.01e-07 1.69e-07 4.77e-08 5.62e-08 7.49e-08 6.21e-08 5.56e-08 4.76e-08 3.26e-07 2.62e-08 1.41e-07 7.26e-08 3.41e-08 1.21e-07 2.13e-09 5.04e-08
ENSG00000111300 NAA25 264157 1.33e-06 8.81e-07 2.62e-07 4.14e-07 3.68e-07 4.43e-07 1.28e-06 9.69e-08 6.62e-07 3.1e-07 1.24e-06 4.75e-07 1.76e-06 1.34e-07 1.45e-07 4.29e-07 7.72e-07 6.91e-07 3.51e-07 1.08e-07 2.93e-07 1.17e-06 5.63e-07 7.22e-08 1.59e-06 2.64e-07 2.23e-07 2.63e-07 4.22e-07 9.22e-07 3.66e-07 5.99e-08 5.75e-08 2.97e-07 4.08e-07 2.54e-07 3.64e-07 1.24e-07 7.72e-08 2.17e-08 5.28e-08 1.36e-06 6.58e-08 1.89e-07 3.41e-08 2.32e-07 7.25e-08 7.28e-08 5.35e-08
ENSG00000173064 HECTD4 -9486 0.000215 0.000265 4.16e-05 8.87e-05 4.05e-05 8.59e-05 0.000248 3.15e-05 0.000204 0.000104 0.000285 0.000104 0.000316 8.09e-05 3.3e-05 0.000158 9.41e-05 0.000149 4.96e-05 4.24e-05 0.000115 0.00024 0.000213 6.45e-05 0.000261 6.09e-05 0.000104 7.6e-05 0.000214 9.99e-05 0.000119 7.56e-06 1.27e-05 3.2e-05 5.73e-05 3.11e-05 1.82e-05 1.77e-05 2.34e-05 1.16e-05 9.65e-06 0.000292 2.84e-05 1.73e-06 1.95e-05 2.72e-05 2.44e-05 1.21e-05 1.02e-05
ENSG00000179295 PTPN11 -45398 0.000129 0.000122 2.56e-05 2.54e-05 1.03e-05 3.06e-05 0.000177 4.84e-06 6.68e-05 2.82e-05 9.15e-05 2.47e-05 0.000107 2.22e-05 8.74e-06 3.66e-05 3.88e-05 4.71e-05 1.34e-05 9.06e-06 2.94e-05 7.77e-05 0.00011 1.27e-05 7.08e-05 1.84e-05 2.29e-05 1.6e-05 9.14e-05 3.09e-05 3.9e-05 1.63e-06 1.44e-06 7.08e-06 1.58e-05 8.56e-06 1.05e-05 4.57e-06 8.79e-06 4.44e-06 1.96e-06 0.000129 8.03e-06 7.45e-07 5.6e-06 7.15e-06 9.22e-06 1.77e-06 1.64e-06
ENSG00000204842 ATXN2 773277 2.66e-07 1.11e-07 3.44e-08 1.65e-07 9.91e-08 9.05e-08 1.36e-07 5.29e-08 1.32e-07 3.99e-08 1.59e-07 7.49e-08 1.2e-07 6.1e-08 4.77e-08 7.76e-08 5.12e-08 1.06e-07 5.12e-08 2.88e-08 1.03e-07 1.31e-07 1.31e-07 5.23e-08 1.33e-07 1.09e-07 1.12e-07 8.27e-08 1.05e-07 1.09e-07 9.5e-08 3.29e-08 2.75e-08 8.09e-08 9.88e-08 4.14e-08 4.7e-08 8.48e-08 8.44e-08 3.87e-08 2.6e-08 1.42e-07 4.51e-08 1.26e-08 1.15e-07 1.8e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000213152 RPL7AP60 70290 5.24e-05 6.09e-05 8.23e-06 1.4e-05 6.91e-06 1.51e-05 7.21e-05 2.45e-06 2.67e-05 1.17e-05 4.02e-05 9.41e-06 4.95e-05 9.68e-06 5.19e-06 1.17e-05 1.42e-05 2.39e-05 6.74e-06 4.41e-06 1.42e-05 3.27e-05 3.76e-05 5.15e-06 2.84e-05 7.28e-06 8.03e-06 7.92e-06 3.14e-05 1.21e-05 1.73e-05 1.67e-06 8.15e-07 4.09e-06 8.09e-06 4.55e-06 6.83e-06 2.81e-06 5.44e-06 3.28e-06 1.05e-06 6.17e-05 4.51e-06 5.02e-07 2.49e-06 4.28e-06 4.08e-06 1.52e-06 1.56e-06
ENSG00000234608 MAPKAPK5-AS1 530051 2.67e-07 1.16e-07 3.69e-08 1.78e-07 9.25e-08 1e-07 1.49e-07 5.21e-08 1.41e-07 4.24e-08 1.59e-07 8.03e-08 1.33e-07 6.07e-08 5.14e-08 7.26e-08 3.9e-08 1.21e-07 5.19e-08 3.59e-08 1.04e-07 1.27e-07 1.26e-07 4.99e-08 1.31e-07 1.19e-07 1.1e-07 8.71e-08 1.02e-07 1.12e-07 9.58e-08 3.52e-08 2.74e-08 8.21e-08 8.87e-08 3.87e-08 4.85e-08 9.26e-08 8.3e-08 3.12e-08 3.46e-08 1.31e-07 4.04e-08 1.52e-08 1.09e-07 1.83e-08 1.37e-07 4.5e-09 4.61e-08