Genes within 1Mb (chr12:112173266:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 331038 eQTL 1.49e-38 -0.19 0.014 0.0 0.0 0.36
ENSG00000089169 RPH3A -397114 eQTL 3.49e-04 -0.109 0.0303 0.0 0.0 0.36
ENSG00000089234 BRAP 487310 pQTL 3.70e-03 -0.0429 0.0147 0.00122 0.0 0.368
ENSG00000089248 ERP29 159918 eQTL 1.70e-04 -0.05 0.0132 0.0 0.0 0.36
ENSG00000111252 SH2B3 767318 pQTL 1.22e-04 -0.056 0.0145 0.0 0.0 0.368
ENSG00000111271 ACAD10 487202 eQTL 1.04e-02 -0.0386 0.015 0.00116 0.0 0.36
ENSG00000111275 ALDH2 406379 pQTL 4.84e-07 -0.131 0.0259 0.0 0.0 0.368
ENSG00000111300 NAA25 64470 eQTL 7.88e-16 -0.0972 0.0119 0.0 0.0 0.36
ENSG00000111335 OAS2 -805129 eQTL 4.70e-03 0.0333 0.0118 0.0 0.0 0.36
ENSG00000135148 TRAFD1 47721 eQTL 3.65e-02 -0.0219 0.0105 0.00101 0.0 0.36
ENSG00000173064 HECTD4 -209173 eQTL 2.10e-90 0.265 0.0118 0.00159 0.004 0.36
ENSG00000179295 PTPN11 -245085 eQTL 1.47e-09 -0.0871 0.0143 0.0 0.0 0.36
ENSG00000198324 PHETA1 804145 eQTL 3.76e-14 0.145 0.0189 0.0 0.00104 0.36
ENSG00000204842 ATXN2 573590 eQTL 2.41e-05 0.0577 0.0136 0.0 0.0 0.36
ENSG00000213152 RPL7AP60 -129397 eQTL 2.71e-05 -0.16 0.0378 0.0036 0.00354 0.36
ENSG00000234608 MAPKAPK5-AS1 330364 eQTL 1.68e-18 -0.115 0.0128 0.00183 0.00401 0.36
ENSG00000257595 LINC02356 803984 eQTL 2.63e-02 0.0733 0.0329 0.0 0.0 0.36


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 331038 1.24e-06 9.28e-07 3.49e-07 7.55e-07 3.48e-07 4.76e-07 1.47e-06 3.41e-07 1.41e-06 4.48e-07 1.63e-06 6.36e-07 1.99e-06 2.55e-07 5.17e-07 8.22e-07 8.37e-07 6.45e-07 8.01e-07 6.82e-07 6.17e-07 1.35e-06 8.96e-07 6.57e-07 2.24e-06 5.15e-07 8.75e-07 6.88e-07 1.3e-06 1.24e-06 6.02e-07 1.92e-07 2.16e-07 6.68e-07 4.91e-07 4.5e-07 5.12e-07 1.68e-07 4.2e-07 2.91e-07 2.67e-07 1.49e-06 5.33e-08 1.06e-07 2.11e-07 1.22e-07 2.29e-07 8.42e-08 1.55e-07
ENSG00000089169 RPH3A -397114 1.31e-06 9e-07 2.81e-07 3.2e-07 2.46e-07 3.22e-07 8.39e-07 2.88e-07 9.42e-07 3.13e-07 1.19e-06 5.95e-07 1.35e-06 2.09e-07 4.55e-07 5.49e-07 7.78e-07 5.27e-07 3.95e-07 4.19e-07 2.83e-07 7.21e-07 5.82e-07 4.55e-07 1.71e-06 3.02e-07 6.03e-07 5.29e-07 8.16e-07 9.22e-07 4.48e-07 3.86e-08 1.36e-07 2.84e-07 3.18e-07 2.94e-07 3.12e-07 1.36e-07 1.49e-07 4.25e-08 2.39e-07 1.12e-06 5.98e-08 4.12e-08 1.72e-07 7.03e-08 1.78e-07 8.25e-08 9.42e-08
ENSG00000089248 ERP29 159918 3.88e-06 3.93e-06 6.72e-07 2.02e-06 1.2e-06 8.69e-07 2.84e-06 9.12e-07 3.17e-06 1.94e-06 4.08e-06 2.48e-06 5.97e-06 1.3e-06 1.26e-06 2.43e-06 1.8e-06 2.33e-06 1.36e-06 9.53e-07 2.05e-06 3.96e-06 3.47e-06 1.71e-06 4.89e-06 1.32e-06 2.15e-06 1.44e-06 4e-06 3.41e-06 2e-06 5.93e-07 7.93e-07 1.73e-06 1.74e-06 8.53e-07 9.14e-07 4.73e-07 1.08e-06 3.8e-07 4.48e-07 4.34e-06 6.38e-07 1.46e-07 3.75e-07 3.58e-07 6.64e-07 2.26e-07 3.26e-07
ENSG00000111300 NAA25 64470 7.84e-06 9.5e-06 1.33e-06 5e-06 2.5e-06 4.01e-06 1.04e-05 2.07e-06 8.75e-06 4.97e-06 1.17e-05 5.23e-06 1.36e-05 3.9e-06 2.45e-06 6.54e-06 4.08e-06 6.88e-06 2.6e-06 2.82e-06 5.05e-06 8.66e-06 7.37e-06 3.29e-06 1.31e-05 3.98e-06 4.84e-06 3.81e-06 9.97e-06 8.46e-06 4.84e-06 1.01e-06 1.17e-06 3.36e-06 3.99e-06 2.59e-06 1.91e-06 1.87e-06 2.21e-06 1.01e-06 1.05e-06 1.15e-05 1.26e-06 2.8e-07 7.75e-07 1.81e-06 1.48e-06 6.9e-07 4.43e-07
ENSG00000173064 HECTD4 -209173 2.14e-06 2.53e-06 3.32e-07 1.7e-06 6.22e-07 7.87e-07 1.87e-06 6.85e-07 1.83e-06 9.61e-07 2.41e-06 1.27e-06 3.49e-06 1.22e-06 8.73e-07 1.54e-06 1.06e-06 2.17e-06 1.08e-06 1.27e-06 1.12e-06 2.76e-06 2.12e-06 1.06e-06 3.46e-06 1.18e-06 1.31e-06 1.68e-06 2e-06 1.86e-06 1.45e-06 3.41e-07 5.03e-07 1.24e-06 9.93e-07 9.48e-07 7.94e-07 3.84e-07 1.13e-06 3.79e-07 2.26e-07 3.27e-06 4.1e-07 1.74e-07 2.89e-07 3.38e-07 6.76e-07 2.41e-07 1.57e-07
ENSG00000179295 PTPN11 -245085 1.58e-06 2.15e-06 2.91e-07 1.35e-06 4.74e-07 6.48e-07 1.3e-06 4.22e-07 1.78e-06 7.54e-07 1.82e-06 1.27e-06 2.74e-06 5.72e-07 4.19e-07 1.06e-06 1.12e-06 1.3e-06 5.66e-07 7.62e-07 6.19e-07 1.96e-06 1.64e-06 1.01e-06 2.52e-06 1.1e-06 1.13e-06 1.07e-06 1.62e-06 1.59e-06 7.66e-07 2.73e-07 3.72e-07 7.25e-07 8.07e-07 6.72e-07 7.27e-07 3.27e-07 7.38e-07 2.04e-07 3.04e-07 2.5e-06 2.92e-07 1.9e-07 3.68e-07 3.12e-07 3.99e-07 2.49e-07 2.41e-07
ENSG00000198324 PHETA1 804145 2.95e-07 1.53e-07 6.26e-08 2.09e-07 1.1e-07 8.33e-08 2.1e-07 5.68e-08 1.59e-07 8.53e-08 1.66e-07 1.22e-07 1.95e-07 8e-08 5.69e-08 8.71e-08 4.45e-08 1.77e-07 7.39e-08 5.46e-08 1.22e-07 1.47e-07 1.58e-07 3.58e-08 2.09e-07 1.43e-07 1.2e-07 1.12e-07 1.32e-07 1.1e-07 1.14e-07 4.47e-08 3.29e-08 9.76e-08 3.07e-08 2.74e-08 4.28e-08 8.51e-08 6.62e-08 6.07e-08 5.94e-08 1.59e-07 5.27e-08 1.43e-08 3.55e-08 1.19e-08 8.46e-08 1.95e-09 4.83e-08
ENSG00000204842 ATXN2 573590 5.59e-07 3.47e-07 8.99e-08 2.92e-07 9.45e-08 1.57e-07 4.25e-07 9.78e-08 2.78e-07 1.89e-07 4.3e-07 2.55e-07 4.88e-07 1.01e-07 1.48e-07 1.75e-07 1.69e-07 3.3e-07 1.62e-07 8.25e-08 1.68e-07 2.7e-07 2.67e-07 1.13e-07 5.75e-07 2.46e-07 2.08e-07 2.01e-07 2.57e-07 3.39e-07 1.95e-07 7.69e-08 5.55e-08 1.21e-07 1.69e-07 6.23e-08 9.52e-08 6.56e-08 4.04e-08 5.12e-08 5.23e-08 3.27e-07 3.26e-08 1.93e-08 9.95e-08 1.37e-08 9.68e-08 2.89e-09 5.56e-08
ENSG00000213152 RPL7AP60 -129397 4.49e-06 4.99e-06 8.35e-07 2.84e-06 1.66e-06 1.57e-06 4.62e-06 1.07e-06 5.16e-06 2.44e-06 5.32e-06 3.54e-06 7.06e-06 2.39e-06 1.33e-06 3.77e-06 1.78e-06 3.49e-06 1.5e-06 1.15e-06 3.01e-06 4.95e-06 4.37e-06 1.53e-06 7.14e-06 1.96e-06 2.35e-06 1.77e-06 4.41e-06 4.36e-06 2.7e-06 4.37e-07 5.21e-07 1.64e-06 2.26e-06 1.17e-06 1.08e-06 4.4e-07 8.51e-07 5.17e-07 7.54e-07 5.69e-06 4.35e-07 1.75e-07 7.43e-07 1.14e-06 1.04e-06 5.83e-07 4.98e-07
ENSG00000234608 MAPKAPK5-AS1 330364 1.25e-06 9.28e-07 3.49e-07 7.82e-07 3.5e-07 4.76e-07 1.47e-06 3.41e-07 1.41e-06 4.48e-07 1.63e-06 6.31e-07 2.02e-06 2.55e-07 5.31e-07 8.22e-07 8.37e-07 6.5e-07 8.26e-07 6.82e-07 6.17e-07 1.35e-06 8.96e-07 6.35e-07 2.24e-06 5.15e-07 8.75e-07 6.88e-07 1.29e-06 1.24e-06 6.16e-07 2.05e-07 2.3e-07 6.83e-07 4.91e-07 4.52e-07 5.02e-07 1.68e-07 4.2e-07 2.91e-07 2.67e-07 1.52e-06 5.37e-08 1.06e-07 2.11e-07 1.23e-07 2.3e-07 8.42e-08 1.55e-07