Genes within 1Mb (chr12:111531584:ATAC:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -310644 eQTL 6.44e-45 -0.273 0.0184 0.0 0.0 0.145
ENSG00000089248 ERP29 -481764 eQTL 3.25e-06 -0.0826 0.0176 0.0 0.0 0.145
ENSG00000111249 CUX2 497419 eQTL 2.01e-02 0.0797 0.0342 0.00157 0.0 0.145
ENSG00000111252 SH2B3 125636 pQTL 1.67e-09 -0.115 0.019 0.0211 0.0213 0.152
ENSG00000111275 ALDH2 -235303 pQTL 2.63e-03 -0.104 0.0344 0.0 0.0 0.152
ENSG00000173064 HECTD4 -850855 eQTL 9.88e-27 0.203 0.0184 0.0 0.0 0.145
ENSG00000196850 PPTC7 948266 eQTL 4.56e-02 0.0294 0.0147 0.0 0.0 0.145
ENSG00000198270 TMEM116 -481601 eQTL 2.11e-11 0.157 0.0232 0.0 0.0 0.145
ENSG00000198324 PHETA1 162463 eQTL 1.10e-19 0.231 0.0249 0.0 0.0 0.145
ENSG00000204842 ATXN2 -68092 eQTL 9.22e-03 0.0477 0.0183 0.0 0.0 0.145
ENSG00000257595 LINC02356 162302 eQTL 4.75e-06 0.201 0.0437 0.0 0.0 0.145
ENSG00000274227 AC073575.2 -487846 eQTL 7.02e-02 -0.0942 0.052 0.00116 0.0 0.145


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -310644 4.04e-06 2.46e-06 2.73e-06 2.02e-06 6.12e-07 1.39e-06 2.62e-06 4.08e-07 1.88e-06 9.48e-07 1.92e-06 1.44e-06 3.83e-06 8.5e-07 9.26e-07 1.38e-06 1.82e-06 2.08e-06 1.48e-06 1.15e-06 1.92e-06 3.2e-06 4.04e-06 1.07e-06 4.51e-06 1.28e-06 1.26e-06 1.85e-06 4.2e-06 1.99e-06 1.45e-06 4.2e-07 6.32e-07 2.38e-06 1.73e-06 9.34e-07 9.21e-07 1.08e-06 1.27e-06 6.03e-07 4.36e-07 3.36e-06 1.26e-06 1.68e-07 2.97e-07 1.71e-06 6.8e-07 2.3e-07 1.53e-07
ENSG00000089248 ERP29 -481764 1.49e-06 9.44e-07 7.43e-07 1.43e-06 3.53e-07 7.16e-07 1.31e-06 2.25e-07 1.57e-06 4.31e-07 1.48e-06 6.03e-07 2.55e-06 2.57e-07 4.28e-07 9.19e-07 9.77e-07 1.13e-06 6.6e-07 7.99e-07 6.12e-07 1.89e-06 1.86e-06 5.54e-07 2.43e-06 7.53e-07 9.28e-07 8.09e-07 1.67e-06 1.27e-06 7.58e-07 2.42e-07 4e-07 1.61e-06 9.03e-07 4.42e-07 7.02e-07 3.79e-07 4.63e-07 3.75e-07 2.88e-07 1.52e-06 3.76e-07 4.16e-08 1.86e-07 1.12e-06 2.28e-07 3.79e-08 5.55e-08
ENSG00000111249 CUX2 497419 1.41e-06 9.44e-07 6.56e-07 1.26e-06 3.44e-07 6.91e-07 1.21e-06 2.03e-07 1.44e-06 4.24e-07 1.39e-06 5.93e-07 2.46e-06 2.67e-07 4.55e-07 8.79e-07 9.41e-07 1.08e-06 7.14e-07 7.4e-07 7.54e-07 1.82e-06 1.79e-06 6.68e-07 2.36e-06 7.32e-07 9.29e-07 7.09e-07 1.62e-06 1.19e-06 7.05e-07 2.05e-07 3.85e-07 1.49e-06 8.75e-07 4.63e-07 7.26e-07 4.21e-07 4.69e-07 3.34e-07 3.59e-07 1.43e-06 4.43e-07 3.36e-08 1.82e-07 1.32e-06 2.42e-07 2.44e-08 6.32e-08
ENSG00000122986 \N 826634 9.47e-07 2.5e-07 2.95e-07 3.5e-07 9.26e-08 4.12e-07 8.39e-07 5.84e-08 4.61e-07 1.89e-07 3.92e-07 2.55e-07 1.05e-06 1.01e-07 5.97e-08 2.05e-07 3.35e-07 4.33e-07 1.93e-07 1.86e-07 2.35e-07 4.38e-07 5.63e-07 1.34e-07 1.42e-06 2.57e-07 3.93e-07 2.18e-07 8e-07 7.06e-07 3.1e-07 5.01e-08 5.55e-08 6.76e-07 3.92e-07 9.51e-08 1.06e-07 1.45e-07 4.11e-08 1.83e-08 1.85e-07 3.73e-07 5.04e-08 1.43e-08 5.4e-08 2.36e-07 1.03e-07 1.88e-09 4.9e-08
ENSG00000173064 HECTD4 -850855 9.14e-07 2.3e-07 2.28e-07 3.17e-07 1.06e-07 4.02e-07 7.53e-07 5.89e-08 4.26e-07 1.7e-07 3.47e-07 2.28e-07 9.79e-07 9.18e-08 5.69e-08 1.96e-07 2.77e-07 4.24e-07 1.77e-07 1.67e-07 2.01e-07 4.11e-07 4.96e-07 1.27e-07 1.35e-06 2.71e-07 3.37e-07 1.97e-07 7.07e-07 6.42e-07 2.73e-07 4.69e-08 4.55e-08 6.95e-07 4.2e-07 7.98e-08 1.08e-07 1.54e-07 5.62e-08 8.66e-09 1.79e-07 3.43e-07 6.65e-08 1.43e-08 4.91e-08 2.14e-07 8.24e-08 3.78e-09 4.94e-08
ENSG00000196850 PPTC7 948266 7.57e-07 1.7e-07 3.27e-07 4.36e-07 1.05e-07 3.22e-07 6.33e-07 5.68e-08 2.78e-07 1.37e-07 2.38e-07 1.86e-07 7.71e-07 8.42e-08 5.98e-08 1.39e-07 1.38e-07 3.67e-07 9.97e-08 1.15e-07 1.76e-07 3.1e-07 3.84e-07 7.36e-08 9.15e-07 2.34e-07 2.58e-07 1.61e-07 5.42e-07 4.51e-07 1.95e-07 3.99e-08 5.55e-08 5.24e-07 3.27e-07 5.7e-08 8.07e-08 1.26e-07 4.74e-08 2.71e-08 1.09e-07 2.6e-07 6.23e-08 7.51e-09 3.4e-08 1.28e-07 1.03e-07 3.86e-09 5.09e-08
ENSG00000198270 TMEM116 -481601 1.49e-06 9.44e-07 7.62e-07 1.42e-06 3.53e-07 7.16e-07 1.31e-06 2.25e-07 1.57e-06 4.44e-07 1.48e-06 6.03e-07 2.55e-06 2.57e-07 4.28e-07 9.19e-07 9.77e-07 1.13e-06 6.6e-07 7.99e-07 6.12e-07 1.89e-06 1.95e-06 5.54e-07 2.43e-06 7.53e-07 9.28e-07 8.09e-07 1.67e-06 1.27e-06 7.58e-07 2.42e-07 4e-07 1.61e-06 9.03e-07 4.42e-07 7.02e-07 3.79e-07 4.63e-07 3.75e-07 2.88e-07 1.52e-06 3.76e-07 4.16e-08 1.86e-07 1.12e-06 2.28e-07 3.79e-08 5.55e-08
ENSG00000198324 PHETA1 162463 9.86e-06 7.87e-06 6.44e-06 3.85e-06 2.13e-06 5.13e-06 1.03e-05 9.78e-07 4.79e-06 3.09e-06 7.5e-06 2.94e-06 1.13e-05 2.07e-06 2.13e-06 4e-06 4.16e-06 3.77e-06 2.19e-06 3.13e-06 4.6e-06 7.69e-06 1.07e-05 1.99e-06 1.19e-05 2.8e-06 3.61e-06 2.36e-06 1.15e-05 5.83e-06 2.91e-06 1.01e-06 1.24e-06 3.69e-06 3.41e-06 2.07e-06 1.71e-06 2.38e-06 1.6e-06 1.2e-06 9.78e-07 1.08e-05 3.04e-06 1.58e-07 6.74e-07 2.69e-06 9.12e-07 6.66e-07 4.89e-07
ENSG00000213152 \N -771079 1.17e-06 3.12e-07 2.85e-07 4.84e-07 1.07e-07 4.67e-07 1.07e-06 6.72e-08 6.18e-07 2.16e-07 4.88e-07 3.27e-07 1.21e-06 1.1e-07 6.53e-08 2.55e-07 4.73e-07 4.52e-07 2.56e-07 2.78e-07 2.42e-07 5.37e-07 6.63e-07 1.8e-07 1.64e-06 2.53e-07 4.62e-07 2.7e-07 9.39e-07 8.38e-07 3.66e-07 5.22e-08 5.82e-08 6.19e-07 4.66e-07 1.44e-07 1.05e-07 1.54e-07 6.01e-08 4.17e-08 2.58e-07 4.82e-07 1.22e-07 7.26e-09 7.89e-08 3.43e-07 1.3e-07 1.9e-09 5e-08