Genes within 1Mb (chr12:111492596:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -349632 eQTL 9.45e-45 -0.272 0.0184 0.0 0.0 0.146
ENSG00000089248 ERP29 -520752 eQTL 2.92e-06 -0.083 0.0176 0.0 0.0 0.146
ENSG00000111249 CUX2 458431 eQTL 2.20e-02 0.0786 0.0342 0.00151 0.0 0.146
ENSG00000111252 SH2B3 86648 pQTL 1.68e-09 -0.115 0.019 0.0207 0.0209 0.152
ENSG00000111275 ALDH2 -274291 pQTL 2.65e-03 -0.103 0.0344 0.0 0.0 0.152
ENSG00000122986 HVCN1 787646 eQTL 1.13e-01 -0.0296 0.0187 0.00103 0.0 0.146
ENSG00000173064 HECTD4 -889843 eQTL 1.23e-26 0.202 0.0184 0.0 0.0 0.146
ENSG00000196850 PPTC7 909278 eQTL 4.54e-02 0.0294 0.0147 0.0 0.0 0.146
ENSG00000198270 TMEM116 -520589 eQTL 1.85e-11 0.158 0.0232 0.0 0.0 0.146
ENSG00000198324 PHETA1 123475 eQTL 1.11e-19 0.231 0.0249 0.0 0.0 0.146
ENSG00000204842 ATXN2 -107080 eQTL 8.94e-03 0.0479 0.0183 0.0 0.0 0.146
ENSG00000257595 LINC02356 123314 eQTL 5.24e-06 0.2 0.0437 0.0 0.0 0.146
ENSG00000274227 AC073575.2 -526834 eQTL 7.28e-02 -0.0934 0.052 0.00115 0.0 0.146


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -349632 1.28e-06 9.29e-07 3.48e-07 6.35e-07 3.47e-07 4.35e-07 1.24e-06 3.37e-07 1.35e-06 4.24e-07 1.36e-06 6.01e-07 1.91e-06 2.78e-07 5.17e-07 8.62e-07 8.4e-07 5.47e-07 7.02e-07 6.33e-07 6.12e-07 1.22e-06 8.52e-07 6.28e-07 1.95e-06 4.17e-07 8.36e-07 7.51e-07 1.24e-06 1.09e-06 5.48e-07 1.91e-07 2.16e-07 5.46e-07 4.49e-07 4.53e-07 5.19e-07 1.69e-07 3.73e-07 3.03e-07 2.56e-07 1.59e-06 6.53e-08 3.38e-08 1.67e-07 1.29e-07 2.37e-07 7.75e-08 1.58e-07
ENSG00000089248 ERP29 -520752 7.3e-07 5.67e-07 1.14e-07 3.61e-07 1.11e-07 1.71e-07 5.31e-07 1.4e-07 4.74e-07 2.37e-07 6.39e-07 3.84e-07 7.36e-07 1.41e-07 2.86e-07 2.89e-07 2.53e-07 3.74e-07 2.25e-07 1.82e-07 2.17e-07 3.87e-07 3.3e-07 1.63e-07 8.09e-07 2.71e-07 3.1e-07 3.13e-07 3.99e-07 4.3e-07 2.83e-07 5.71e-08 5.39e-08 1.36e-07 3.03e-07 1.44e-07 8.43e-08 8.04e-08 6.49e-08 2.28e-08 1.45e-07 5.09e-07 1.6e-08 1.87e-08 1.47e-07 1.37e-08 1.11e-07 1.15e-08 6.36e-08
ENSG00000111249 CUX2 458431 9.14e-07 6.99e-07 1.59e-07 4.4e-07 1.54e-07 2.42e-07 6.23e-07 2.06e-07 7.15e-07 3.16e-07 9.73e-07 5.22e-07 9.97e-07 1.59e-07 3.86e-07 4.12e-07 4.87e-07 4.31e-07 3.01e-07 3.09e-07 2.39e-07 5.37e-07 3.99e-07 2.68e-07 1.28e-06 2.37e-07 4.71e-07 4.7e-07 5.9e-07 6.73e-07 3.79e-07 4.34e-08 9.26e-08 1.77e-07 3.61e-07 2.59e-07 1.97e-07 1.13e-07 8.24e-08 1.87e-08 2.84e-07 7.53e-07 3.55e-08 1.62e-08 1.95e-07 3.54e-08 1.18e-07 2.48e-08 5.25e-08
ENSG00000122986 HVCN1 787646 3.02e-07 1.59e-07 6.42e-08 2.26e-07 1.06e-07 8.33e-08 2.24e-07 5.78e-08 1.86e-07 1.03e-07 1.76e-07 1.48e-07 2.38e-07 8.15e-08 6.53e-08 9.35e-08 4.35e-08 1.8e-07 7.36e-08 6.73e-08 1.24e-07 1.7e-07 1.64e-07 3.59e-08 2.37e-07 1.65e-07 1.31e-07 1.46e-07 1.37e-07 1.1e-07 1.26e-07 4.43e-08 4.23e-08 9.58e-08 4.04e-08 3.43e-08 5.02e-08 7.61e-08 6.29e-08 7.65e-08 2.78e-08 1.59e-07 5.39e-08 1.1e-08 3.66e-08 6.68e-09 7.92e-08 2.05e-09 4.97e-08
ENSG00000173064 HECTD4 -889843 2.8e-07 1.42e-07 6.04e-08 2.05e-07 1.01e-07 9.05e-08 1.9e-07 5.85e-08 1.59e-07 7.6e-08 1.59e-07 1.22e-07 1.87e-07 8.13e-08 5.69e-08 8.08e-08 4.18e-08 1.56e-07 7.18e-08 5.48e-08 1.22e-07 1.39e-07 1.58e-07 3.22e-08 1.98e-07 1.31e-07 1.19e-07 1.26e-07 1.34e-07 1e-07 1.06e-07 3.9e-08 3.21e-08 8.89e-08 3.4e-08 2.85e-08 4.41e-08 9.17e-08 6.28e-08 5.96e-08 5.39e-08 1.5e-07 5.2e-08 1.2e-08 3.32e-08 1.55e-08 1e-07 1.92e-09 4.85e-08
ENSG00000196850 PPTC7 909278 2.8e-07 1.33e-07 5.93e-08 2.01e-07 1.02e-07 9.05e-08 1.81e-07 5.75e-08 1.54e-07 6.75e-08 1.67e-07 1.2e-07 1.79e-07 7.95e-08 5.36e-08 7.98e-08 4.24e-08 1.56e-07 7.12e-08 5.46e-08 1.27e-07 1.31e-07 1.58e-07 2.68e-08 1.85e-07 1.31e-07 1.17e-07 1.17e-07 1.31e-07 9.88e-08 1.07e-07 3.78e-08 3.13e-08 8.7e-08 3.81e-08 2.74e-08 4.62e-08 9.03e-08 6.41e-08 5.45e-08 4.78e-08 1.48e-07 5.2e-08 1.24e-08 3.07e-08 1.71e-08 1.11e-07 1.91e-09 4.83e-08
ENSG00000198270 TMEM116 -520589 7.3e-07 5.67e-07 1.14e-07 3.61e-07 1.11e-07 1.71e-07 5.31e-07 1.4e-07 4.74e-07 2.37e-07 6.39e-07 3.84e-07 7.36e-07 1.41e-07 2.86e-07 2.89e-07 2.53e-07 3.74e-07 2.25e-07 1.82e-07 2.17e-07 3.87e-07 3.3e-07 1.63e-07 8.09e-07 2.71e-07 3.1e-07 3.13e-07 3.99e-07 4.3e-07 2.83e-07 5.71e-08 5.39e-08 1.36e-07 3.03e-07 1.46e-07 8.43e-08 8.04e-08 6.49e-08 2.28e-08 1.45e-07 5.09e-07 1.6e-08 1.87e-08 1.47e-07 1.37e-08 1.11e-07 1.15e-08 6.36e-08
ENSG00000198324 PHETA1 123475 4.46e-06 5.1e-06 7.29e-07 3.09e-06 1.47e-06 1.57e-06 5.66e-06 1.14e-06 5.06e-06 2.91e-06 5.75e-06 3.34e-06 7.72e-06 1.99e-06 1.04e-06 3.77e-06 1.82e-06 3.8e-06 1.51e-06 1.55e-06 2.84e-06 4.88e-06 4.48e-06 1.84e-06 8.02e-06 2.16e-06 2.64e-06 1.73e-06 4.95e-06 4.43e-06 2.89e-06 4.46e-07 7.75e-07 1.84e-06 2.02e-06 1.31e-06 1.11e-06 4.36e-07 9.49e-07 6.39e-07 8.99e-07 6.1e-06 3.65e-07 1.49e-07 7.32e-07 1.06e-06 1.14e-06 6.91e-07 6.04e-07
ENSG00000213152 \N -810067 2.95e-07 1.56e-07 6.41e-08 2.22e-07 1.08e-07 8.45e-08 2.16e-07 5.82e-08 1.85e-07 9.72e-08 1.66e-07 1.37e-07 2.24e-07 8.07e-08 6.2e-08 9.48e-08 4.31e-08 1.77e-07 7.29e-08 6.02e-08 1.26e-07 1.65e-07 1.58e-07 3.42e-08 2.28e-07 1.56e-07 1.29e-07 1.47e-07 1.37e-07 1.06e-07 1.21e-07 4.85e-08 3.74e-08 9.8e-08 3.57e-08 3.24e-08 4.54e-08 8.25e-08 6.33e-08 6.92e-08 3.2e-08 1.6e-07 5.12e-08 7.35e-09 3.3e-08 6.53e-09 8.98e-08 2e-09 4.67e-08