Genes within 1Mb (chr12:111478772:TGG:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -363456 eQTL 2.43e-16 0.214 0.0256 0.0 0.0 0.0844
ENSG00000089248 ERP29 -534576 eQTL 1.56e-02 0.0559 0.0231 0.0 0.0 0.0844
ENSG00000111249 CUX2 444607 eQTL 4.70e-02 -0.0885 0.0445 0.00135 0.0 0.0844
ENSG00000111252 SH2B3 72824 pQTL 2.87e-04 0.0912 0.0251 0.0 0.0 0.0874
ENSG00000111275 ALDH2 -288115 pQTL 1.35e-02 0.111 0.045 0.0 0.0 0.0874
ENSG00000111275 ALDH2 -288115 eQTL 1.09e-03 0.0968 0.0296 0.0 0.0 0.0844
ENSG00000122986 HVCN1 773822 eQTL 5.76e-02 0.046 0.0242 0.00156 0.0 0.0844
ENSG00000173064 HECTD4 -903667 eQTL 1.96e-15 -0.198 0.0245 0.0 0.0 0.0844
ENSG00000198270 TMEM116 -534413 eQTL 1.43e-03 -0.0981 0.0307 0.0 0.0 0.0844
ENSG00000198324 PHETA1 109651 eQTL 8.34e-09 -0.193 0.0332 0.0 0.0 0.0844
ENSG00000204842 ATXN2 -120904 eQTL 2.01e-02 -0.0553 0.0237 0.0 0.0 0.0844
ENSG00000213152 RPL7AP60 -823891 eQTL 2.63e-02 0.147 0.0661 0.0 0.0 0.0844
ENSG00000257595 LINC02356 109490 eQTL 2.68e-02 -0.127 0.0572 0.0 0.0 0.0844


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -363456 2.13e-06 2.81e-06 3.22e-07 1.72e-06 3.88e-07 6.38e-07 1.29e-06 2.04e-07 1.68e-06 6.05e-07 1.99e-06 1.45e-06 3.04e-06 1.24e-06 3.64e-07 1.24e-06 1.04e-06 1.46e-06 7.52e-07 5.33e-07 7.41e-07 1.97e-06 1.56e-06 5.84e-07 2.45e-06 6.01e-07 9.13e-07 7.14e-07 1.49e-06 1.22e-06 8.15e-07 6.31e-08 2.34e-07 1.76e-06 1.67e-06 4.18e-07 1.22e-07 1.37e-07 5.16e-07 2.29e-07 1.85e-07 2.7e-06 6.13e-08 7.51e-09 1.23e-07 2.13e-07 2.2e-07 2.25e-08 5.4e-08
ENSG00000111249 CUX2 444607 1.3e-06 1.84e-06 2.29e-07 1.26e-06 1.78e-07 4.43e-07 1.63e-06 7.65e-08 1.09e-06 2.85e-07 1.39e-06 7.53e-07 2.19e-06 3.24e-07 4.26e-07 9.13e-07 7.96e-07 7.72e-07 2.88e-07 1.31e-07 3.5e-07 1.2e-06 9.21e-07 1.58e-07 1.88e-06 2.52e-07 5.24e-07 3.51e-07 6.76e-07 7.09e-07 5.67e-07 4.61e-08 4.55e-08 1.22e-06 8.1e-07 9.51e-08 6.14e-08 6.56e-08 1.83e-07 2.44e-07 4.49e-08 1.49e-06 4.47e-08 1.71e-08 3.3e-08 6.12e-08 1.19e-07 2.1e-09 4.55e-08
ENSG00000111252 SH2B3 72824 1.26e-05 1.71e-05 4.17e-06 1.13e-05 2.41e-06 6.12e-06 2.42e-05 2.14e-06 1.48e-05 7.23e-06 1.8e-05 8.18e-06 2.82e-05 5.63e-06 5.66e-06 9.51e-06 8.19e-06 1.33e-05 2.95e-06 2.92e-06 6.92e-06 1.28e-05 1.63e-05 4.74e-06 2.52e-05 5.34e-06 7.12e-06 6.87e-06 1.73e-05 1.08e-05 8.36e-06 9.89e-07 1.48e-06 4.01e-06 6.28e-06 3.93e-06 1.78e-06 2.16e-06 3.15e-06 3.57e-06 1.14e-06 2.41e-05 2.48e-06 1.61e-07 1.03e-06 2.68e-06 2.56e-06 1.24e-06 8.3e-07
ENSG00000122986 HVCN1 773822 3.77e-07 4.24e-07 6.86e-08 2.57e-07 9.16e-08 8.21e-08 2.4e-07 5.35e-08 1.47e-07 4.94e-08 1.63e-07 1.57e-07 2.45e-07 9.18e-08 6.18e-08 8.71e-08 4.24e-08 2.56e-07 5.36e-08 3.88e-08 1.22e-07 1.42e-07 1.58e-07 4.13e-08 2.02e-07 1.14e-07 1.13e-07 9.36e-08 1.09e-07 1.07e-07 1.14e-07 3.72e-08 3.26e-08 1.38e-07 1.69e-07 3.97e-08 5.64e-08 9.25e-08 6.63e-08 4.19e-08 3.27e-08 1.59e-07 4.04e-08 0.0 9.21e-08 1.84e-08 1.23e-07 4.6e-09 4.61e-08
ENSG00000173064 HECTD4 -903667 2.91e-07 1.92e-07 5.35e-08 2.26e-07 8.92e-08 1e-07 1.6e-07 5.21e-08 1.44e-07 4.38e-08 1.54e-07 1.15e-07 1.59e-07 8.15e-08 6e-08 7.36e-08 3.98e-08 1.72e-07 5.19e-08 3.29e-08 1.05e-07 1.27e-07 1.39e-07 4.82e-08 1.5e-07 1.15e-07 1.08e-07 8.7e-08 1.02e-07 1.12e-07 9.92e-08 3.59e-08 2.74e-08 9.9e-08 4.78e-08 3.97e-08 5.1e-08 8.91e-08 7.47e-08 3.55e-08 3.35e-08 1.46e-07 4.01e-08 0.0 1.09e-07 1.67e-08 1.27e-07 4.82e-09 4.61e-08
ENSG00000196850 \N 895454 2.95e-07 2.17e-07 5.35e-08 2.27e-07 8.92e-08 9.8e-08 1.6e-07 5.21e-08 1.44e-07 4.4e-08 1.54e-07 1.15e-07 1.69e-07 8.44e-08 6e-08 7.49e-08 3.98e-08 1.72e-07 5.19e-08 3.29e-08 1.05e-07 1.27e-07 1.39e-07 4.67e-08 1.5e-07 1.19e-07 1.06e-07 8.7e-08 1.03e-07 1.12e-07 9.92e-08 3.59e-08 2.74e-08 9.09e-08 5.16e-08 3.97e-08 5.1e-08 8.91e-08 7.23e-08 3.55e-08 3.25e-08 1.46e-07 4.01e-08 0.0 1.09e-07 1.67e-08 1.27e-07 4.82e-09 4.61e-08
ENSG00000198270 TMEM116 -534413 1.24e-06 9.28e-07 2.62e-07 4.15e-07 1.07e-07 2.46e-07 7.22e-07 5.66e-08 4.26e-07 1.89e-07 9.39e-07 5.81e-07 1.3e-06 2.72e-07 2.44e-07 4.14e-07 3.13e-07 5.27e-07 9.71e-08 5.87e-08 2.05e-07 4.99e-07 4.01e-07 4.37e-08 1.13e-06 2.07e-07 2.57e-07 1.7e-07 2.57e-07 2.19e-07 3.79e-07 3.87e-08 4.34e-08 5.71e-07 5.34e-07 3.36e-08 5.31e-08 8.89e-08 5.93e-08 1.57e-08 5.59e-08 8.45e-07 3.08e-08 2.49e-08 4.7e-08 1.88e-08 9.25e-08 3.86e-09 4.94e-08
ENSG00000198324 PHETA1 109651 9.29e-06 1.27e-05 3.05e-06 8.21e-06 2.36e-06 4.92e-06 1.75e-05 1.79e-06 9.95e-06 5.47e-06 1.31e-05 6.68e-06 2.02e-05 3.99e-06 5.09e-06 7.01e-06 6.45e-06 9.66e-06 2.6e-06 2.77e-06 5.7e-06 1.02e-05 1.21e-05 3.4e-06 1.77e-05 4.55e-06 4.84e-06 5e-06 1.35e-05 7.92e-06 5.43e-06 9.67e-07 1.11e-06 3.7e-06 5.03e-06 2.87e-06 1.82e-06 1.91e-06 2.46e-06 2.88e-06 9.45e-07 1.79e-05 1.62e-06 1.59e-07 7.68e-07 2.6e-06 1.84e-06 8.55e-07 4.73e-07