Genes within 1Mb (chr12:111426880:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -415348 eQTL 3.74e-42 -0.26 0.0182 0.0 0.0 0.155
ENSG00000089248 ERP29 -586468 eQTL 5.37e-05 -0.0705 0.0174 0.0 0.0 0.155
ENSG00000111231 GPN3 957612 eQTL 3.79e-02 0.0599 0.0288 0.0 0.0 0.155
ENSG00000111249 CUX2 392715 eQTL 2.80e-02 0.074 0.0336 0.00136 0.0 0.155
ENSG00000111252 SH2B3 20932 pQTL 8.26e-10 -0.116 0.0187 0.041 0.0407 0.161
ENSG00000111275 ALDH2 -340007 pQTL 1.68e-03 -0.107 0.0339 0.0 0.0 0.161
ENSG00000173064 HECTD4 -955559 eQTL 2.81e-28 0.205 0.018 0.0 0.0 0.155
ENSG00000196850 PPTC7 843562 eQTL 1.76e-02 0.0343 0.0144 0.00134 0.0 0.155
ENSG00000198270 TMEM116 -586305 eQTL 4.50e-09 0.136 0.0229 0.0 0.0 0.155
ENSG00000198324 PHETA1 57759 eQTL 1.59e-18 0.22 0.0245 0.0 0.0 0.155
ENSG00000204842 ATXN2 -172796 eQTL 4.86e-03 0.0506 0.0179 0.0 0.0 0.155
ENSG00000213152 RPL7AP60 -875783 eQTL 1.98e-02 -0.117 0.05 0.0 0.0 0.155
ENSG00000257595 LINC02356 57598 eQTL 2.72e-06 0.202 0.0429 0.0 0.0 0.155
ENSG00000274227 AC073575.2 -592550 eQTL 1.12e-01 -0.0812 0.051 0.00104 0.0 0.155


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -415348 7.57e-07 6.56e-07 1.02e-07 4.25e-07 9.86e-08 2.54e-07 5.8e-07 1.59e-07 4.74e-07 2.8e-07 8.58e-07 3.73e-07 9.23e-07 1.56e-07 2.48e-07 2.1e-07 4.54e-07 3.95e-07 2.51e-07 1.8e-07 2.17e-07 4.79e-07 4.13e-07 2.22e-07 1.13e-06 2.49e-07 3.04e-07 2.74e-07 4.15e-07 6.98e-07 3.56e-07 6.84e-08 5.71e-08 1.73e-07 3.44e-07 8.32e-08 1.38e-07 1.06e-07 7.99e-08 2.74e-08 1.17e-07 7.04e-07 4.12e-08 5.83e-09 1.27e-07 4.33e-08 1.01e-07 1.17e-08 5.43e-08
ENSG00000089248 ERP29 -586468 3.07e-07 1.92e-07 6.42e-08 2.61e-07 1.1e-07 1.13e-07 2.86e-07 6.72e-08 1.89e-07 1.15e-07 2.18e-07 1.48e-07 3.04e-07 8.26e-08 6.53e-08 9.6e-08 6.63e-08 2.15e-07 7.53e-08 8e-08 1.33e-07 2.09e-07 2e-07 4.25e-08 2.99e-07 1.51e-07 1.29e-07 1.46e-07 1.44e-07 1.8e-07 1.39e-07 4.78e-08 4.76e-08 9.98e-08 8.75e-08 3.43e-08 6.95e-08 5.92e-08 4.82e-08 7.65e-08 4.07e-08 2.19e-07 3.08e-08 2.09e-08 4.06e-08 9.49e-09 7.13e-08 2.23e-09 4.97e-08
ENSG00000111231 GPN3 957612 2.64e-07 1.19e-07 3.71e-08 1.81e-07 9.21e-08 1e-07 1.44e-07 5.4e-08 1.44e-07 4.74e-08 1.62e-07 8.36e-08 1.41e-07 6.76e-08 6.17e-08 7.17e-08 3.98e-08 1.21e-07 5.82e-08 4.04e-08 1.08e-07 1.28e-07 1.39e-07 3.23e-08 1.4e-07 1.16e-07 1.06e-07 9.65e-08 1.08e-07 1.07e-07 9.64e-08 3.64e-08 3.61e-08 8.44e-08 8.21e-08 3.95e-08 5.59e-08 9.3e-08 6.37e-08 3.87e-08 5.42e-08 1.35e-07 4.7e-08 1.22e-08 5.15e-08 1.87e-08 1.19e-07 3.83e-09 4.94e-08
ENSG00000111249 CUX2 392715 8.43e-07 7.56e-07 1.14e-07 3.1e-07 1.12e-07 3.15e-07 6.09e-07 2e-07 6.03e-07 3.1e-07 1.03e-06 4.43e-07 1.02e-06 1.97e-07 3.15e-07 2.83e-07 5.56e-07 4.22e-07 2.65e-07 2.15e-07 2.38e-07 5.5e-07 4.66e-07 2.68e-07 1.36e-06 2.68e-07 3.93e-07 3.24e-07 5.03e-07 7.79e-07 3.79e-07 5.93e-08 4.92e-08 1.79e-07 3.69e-07 1.28e-07 1.83e-07 1.23e-07 8.06e-08 2.28e-08 1.15e-07 7.45e-07 4.59e-08 1.23e-08 1.45e-07 6.12e-08 1.3e-07 1.28e-08 6.03e-08
ENSG00000122986 \N 721930 2.67e-07 1.42e-07 5.49e-08 2.27e-07 9.8e-08 8.45e-08 1.81e-07 5.62e-08 1.5e-07 7.6e-08 1.59e-07 1.08e-07 1.87e-07 8e-08 5.82e-08 7.23e-08 4.45e-08 1.51e-07 7.12e-08 5.33e-08 1.27e-07 1.42e-07 1.62e-07 3.4e-08 1.85e-07 1.22e-07 1.12e-07 1.04e-07 1.26e-07 1.07e-07 1.06e-07 3.66e-08 3.29e-08 9.52e-08 3.12e-08 2.95e-08 4.62e-08 8.2e-08 6.62e-08 4.08e-08 5.94e-08 1.52e-07 5.12e-08 1.08e-08 2.64e-08 6.83e-09 1.11e-07 1.92e-09 4.81e-08
ENSG00000173064 HECTD4 -955559 2.64e-07 1.19e-07 3.71e-08 1.81e-07 9.21e-08 1e-07 1.44e-07 5.4e-08 1.44e-07 4.74e-08 1.62e-07 8.36e-08 1.41e-07 6.76e-08 6.17e-08 7.17e-08 3.98e-08 1.21e-07 5.82e-08 4.1e-08 1.08e-07 1.28e-07 1.39e-07 3.23e-08 1.4e-07 1.16e-07 1.06e-07 9.65e-08 1.08e-07 1.07e-07 9.64e-08 3.64e-08 3.61e-08 8.44e-08 8.21e-08 3.95e-08 5.45e-08 9.3e-08 6.59e-08 3.87e-08 5.43e-08 1.35e-07 4.7e-08 1.22e-08 5.15e-08 1.87e-08 1.19e-07 3.83e-09 4.94e-08
ENSG00000196850 PPTC7 843562 2.69e-07 1.3e-07 4.47e-08 2.01e-07 9.25e-08 9.91e-08 1.61e-07 5.53e-08 1.45e-07 5.67e-08 1.55e-07 8.68e-08 1.52e-07 7.37e-08 5.91e-08 7.53e-08 4.09e-08 1.27e-07 5.97e-08 4.3e-08 1.21e-07 1.24e-07 1.44e-07 2.91e-08 1.55e-07 1.14e-07 1.07e-07 9.74e-08 1.16e-07 1.07e-07 9.92e-08 2.9e-08 3.73e-08 8.23e-08 5.99e-08 3.53e-08 5.51e-08 8.61e-08 6.71e-08 4.19e-08 5.28e-08 1.46e-07 5.21e-08 1.11e-08 3.83e-08 1.68e-08 1.22e-07 1.88e-09 5.02e-08
ENSG00000198270 TMEM116 -586305 3.07e-07 1.92e-07 6.42e-08 2.61e-07 1.1e-07 1.13e-07 2.86e-07 6.72e-08 1.89e-07 1.15e-07 2.18e-07 1.48e-07 3.04e-07 8.26e-08 6.53e-08 9.6e-08 6.63e-08 2.15e-07 7.53e-08 8e-08 1.33e-07 2.09e-07 2e-07 4.25e-08 2.99e-07 1.51e-07 1.29e-07 1.46e-07 1.44e-07 1.8e-07 1.39e-07 4.78e-08 4.76e-08 9.98e-08 8.75e-08 3.43e-08 6.95e-08 5.92e-08 4.82e-08 7.65e-08 4.07e-08 2.19e-07 3.08e-08 2.09e-08 4.06e-08 9.49e-09 7.13e-08 2.23e-09 4.83e-08
ENSG00000198324 PHETA1 57759 6.57e-06 9.3e-06 9.56e-07 4.35e-06 1.85e-06 2.76e-06 9.55e-06 1.3e-06 6.06e-06 4.29e-06 1.01e-05 4.59e-06 1.15e-05 3.87e-06 1.83e-06 4.64e-06 3.8e-06 3.94e-06 2.18e-06 2.16e-06 3.37e-06 7.65e-06 6.57e-06 2.18e-06 1.25e-05 2.35e-06 3.64e-06 2.34e-06 7.12e-06 7.96e-06 4.13e-06 4.73e-07 7.77e-07 2.69e-06 3.3e-06 1.38e-06 1.12e-06 9.68e-07 1.37e-06 7.43e-07 8.05e-07 1.04e-05 8.15e-07 1.68e-07 7.7e-07 1.2e-06 8.85e-07 6.58e-07 5.44e-07
ENSG00000213152 RPL7AP60 -875783 2.67e-07 1.3e-07 4.08e-08 1.9e-07 9.25e-08 9.9e-08 1.53e-07 5.48e-08 1.45e-07 5.42e-08 1.54e-07 8.55e-08 1.47e-07 7.13e-08 6.04e-08 7.3e-08 4.17e-08 1.26e-07 5.97e-08 4.31e-08 1.19e-07 1.24e-07 1.45e-07 2.93e-08 1.5e-07 1.14e-07 1.07e-07 9.74e-08 1.12e-07 1.07e-07 9.7e-08 3.08e-08 3.96e-08 8e-08 6.67e-08 3.65e-08 5.74e-08 8.63e-08 6.57e-08 3.86e-08 5.41e-08 1.4e-07 5.24e-08 7.43e-09 4.25e-08 1.8e-08 1.22e-07 3.79e-09 4.88e-08
ENSG00000241680 \N 965892 2.64e-07 1.19e-07 3.71e-08 1.81e-07 9.21e-08 1e-07 1.44e-07 5.37e-08 1.44e-07 4.74e-08 1.62e-07 8.36e-08 1.41e-07 6.76e-08 5.99e-08 7.17e-08 3.98e-08 1.18e-07 5.39e-08 4.04e-08 1.08e-07 1.28e-07 1.39e-07 3.49e-08 1.4e-07 1.16e-07 1.06e-07 9.57e-08 1.08e-07 1.07e-07 9.64e-08 3.64e-08 3.61e-08 8.44e-08 8.21e-08 3.95e-08 5.59e-08 9.3e-08 6.37e-08 4.02e-08 5.42e-08 1.33e-07 4.7e-08 1.23e-08 5.15e-08 1.87e-08 1.19e-07 3.83e-09 4.94e-08