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Genes within 1Mb (chr1:52763367:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 884430 sc-eQTL 7.42e-01 0.0773 0.234 0.051 B_Activated L2
ENSG00000116157 GPX7 160996 sc-eQTL 7.58e-01 0.0662 0.215 0.051 B_Activated L2
ENSG00000116171 SCP2 -163909 sc-eQTL 6.45e-01 0.0934 0.202 0.051 B_Activated L2
ENSG00000117862 TXNDC12 707196 sc-eQTL 7.60e-01 -0.0675 0.22 0.051 B_Activated L2
ENSG00000121310 ECHDC2 -163845 sc-eQTL 8.16e-01 0.0529 0.227 0.051 B_Activated L2
ENSG00000134717 BTF3L4 707168 sc-eQTL 4.13e-01 -0.19 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 209880 sc-eQTL 6.89e-01 -0.0863 0.215 0.051 B_Activated L2
ENSG00000134748 PRPF38A 358765 sc-eQTL 8.45e-01 -0.0427 0.218 0.051 B_Activated L2
ENSG00000154222 CC2D1B 397174 sc-eQTL 1.94e-01 0.277 0.212 0.051 B_Activated L2
ENSG00000157184 CPT2 -433425 sc-eQTL 9.27e-01 -0.018 0.195 0.051 B_Activated L2
ENSG00000157193 LRP8 -565102 sc-eQTL 4.72e-01 -0.136 0.189 0.051 B_Activated L2
ENSG00000162377 COA7 65020 sc-eQTL 2.67e-01 -0.202 0.181 0.051 B_Activated L2
ENSG00000162378 ZYG11B 36914 sc-eQTL 7.94e-01 -0.0581 0.222 0.051 B_Activated L2
ENSG00000162384 CZIB -457267 sc-eQTL 8.18e-01 -0.0505 0.219 0.051 B_Activated L2
ENSG00000162385 MAGOH -475151 sc-eQTL 6.77e-01 0.095 0.228 0.051 B_Activated L2
ENSG00000182183 SHISAL2A 130199 sc-eQTL 7.91e-01 -0.052 0.196 0.051 B_Activated L2
ENSG00000198841 KTI12 729557 sc-eQTL 3.32e-01 -0.181 0.186 0.051 B_Activated L2
ENSG00000230138 LINC02812 -604878 sc-eQTL 1.13e-01 -0.301 0.189 0.051 B_Activated L2
ENSG00000078618 NRDC 884430 sc-eQTL 7.00e-01 0.0586 0.152 0.07 PB L2
ENSG00000116157 GPX7 160996 sc-eQTL 5.72e-01 -0.0954 0.168 0.07 PB L2
ENSG00000116171 SCP2 -163909 sc-eQTL 4.87e-01 0.102 0.146 0.07 PB L2
ENSG00000117862 TXNDC12 707196 sc-eQTL 8.04e-01 0.0333 0.134 0.07 PB L2
ENSG00000121310 ECHDC2 -163845 sc-eQTL 1.57e-01 -0.307 0.215 0.07 PB L2
ENSG00000134717 BTF3L4 707168 sc-eQTL 3.77e-01 0.191 0.216 0.07 PB L2
ENSG00000134744 TUT4 209880 sc-eQTL 1.51e-01 -0.285 0.197 0.07 PB L2
ENSG00000134748 PRPF38A 358765 sc-eQTL 1.00e+00 8.7e-05 0.188 0.07 PB L2
ENSG00000154222 CC2D1B 397174 sc-eQTL 1.53e-01 0.294 0.205 0.07 PB L2
ENSG00000157184 CPT2 -433425 sc-eQTL 4.57e-01 0.139 0.187 0.07 PB L2
ENSG00000157193 LRP8 -565102 sc-eQTL 9.44e-01 -0.0139 0.198 0.07 PB L2
ENSG00000162377 COA7 65020 sc-eQTL 1.78e-01 -0.259 0.191 0.07 PB L2
ENSG00000162378 ZYG11B 36914 sc-eQTL 9.91e-02 -0.346 0.208 0.07 PB L2
ENSG00000162384 CZIB -457267 sc-eQTL 8.33e-01 0.0437 0.206 0.07 PB L2
ENSG00000162385 MAGOH -475151 sc-eQTL 2.52e-01 0.218 0.19 0.07 PB L2
ENSG00000182183 SHISAL2A 130199 sc-eQTL 4.62e-02 0.346 0.172 0.07 PB L2
ENSG00000198841 KTI12 729557 sc-eQTL 2.19e-01 -0.243 0.197 0.07 PB L2
ENSG00000230138 LINC02812 -604878 sc-eQTL 6.48e-02 0.282 0.151 0.07 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116171 SCP2 -163909 eQTL 0.000283 -0.172 0.0471 0.0 0.0 0.029
ENSG00000121310 ECHDC2 -163845 eQTL 5.84e-10 -0.321 0.0512 0.0 0.0 0.029
ENSG00000154222 CC2D1B 397174 eQTL 0.0356 -0.11 0.0521 0.0 0.0 0.029
ENSG00000162378 ZYG11B 36914 eQTL 0.00218 -0.179 0.0582 0.00122 0.0 0.029
ENSG00000226147 TUBBP10 -231359 eQTL 0.000248 -0.427 0.116 0.0 0.0 0.029

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116171 SCP2 -163909 3.24e-06 2.7e-06 4.9e-07 2.07e-06 8.7e-07 7.53e-07 2.29e-06 8.79e-07 2.28e-06 1.22e-06 2.61e-06 1.63e-06 3.75e-06 1.36e-06 8.98e-07 1.98e-06 1.58e-06 2.13e-06 1.5e-06 1.19e-06 1.4e-06 3.2e-06 2.69e-06 1.68e-06 4.08e-06 1.28e-06 1.48e-06 1.77e-06 3.18e-06 2.46e-06 1.93e-06 4.51e-07 6.65e-07 1.32e-06 1.56e-06 8.95e-07 8.89e-07 4.24e-07 1.35e-06 3.46e-07 3.48e-07 3.38e-06 5.93e-07 1.93e-07 4.13e-07 3.6e-07 8.69e-07 2.47e-07 1.78e-07
ENSG00000121310 ECHDC2 -163845 3.24e-06 2.7e-06 4.9e-07 2.07e-06 8.54e-07 7.53e-07 2.24e-06 8.79e-07 2.28e-06 1.22e-06 2.61e-06 1.63e-06 3.75e-06 1.36e-06 8.98e-07 1.98e-06 1.58e-06 2.13e-06 1.5e-06 1.19e-06 1.4e-06 3.19e-06 2.69e-06 1.68e-06 4.08e-06 1.28e-06 1.48e-06 1.77e-06 3.18e-06 2.46e-06 1.93e-06 4.51e-07 6.65e-07 1.34e-06 1.54e-06 8.95e-07 8.89e-07 4.24e-07 1.35e-06 3.46e-07 3.48e-07 3.37e-06 5.93e-07 1.93e-07 4.13e-07 3.6e-07 8.69e-07 2.47e-07 1.78e-07
ENSG00000134744 \N 209880 1.96e-06 2.05e-06 2.59e-07 1.27e-06 4.62e-07 6.43e-07 1.29e-06 5.96e-07 1.67e-06 7.32e-07 1.83e-06 1.34e-06 2.89e-06 6.86e-07 4.63e-07 1.23e-06 1.07e-06 1.46e-06 5.32e-07 8.21e-07 7.02e-07 1.92e-06 1.71e-06 9.82e-07 2.65e-06 1.22e-06 1.1e-06 1.32e-06 1.71e-06 1.61e-06 7.39e-07 2.48e-07 4.74e-07 9.68e-07 9.62e-07 7.36e-07 7.26e-07 3.81e-07 6.91e-07 2.58e-07 1.82e-07 2.5e-06 3.73e-07 1.75e-07 3.6e-07 2.82e-07 4.3e-07 2.64e-07 2.29e-07
ENSG00000162378 ZYG11B 36914 1.04e-05 1.13e-05 2.36e-06 6.69e-06 2.4e-06 5.45e-06 1.33e-05 2.14e-06 1.06e-05 5.52e-06 1.41e-05 6.02e-06 1.86e-05 3.95e-06 3.67e-06 6.93e-06 5.99e-06 9.77e-06 3.6e-06 3.29e-06 6.54e-06 1.09e-05 1.07e-05 4.56e-06 1.83e-05 4.65e-06 6.35e-06 5e-06 1.37e-05 1.31e-05 6.69e-06 1.01e-06 1.42e-06 3.99e-06 5.03e-06 3.41e-06 1.76e-06 2.29e-06 2.65e-06 1.92e-06 1.63e-06 1.39e-05 1.57e-06 3.57e-07 1.55e-06 2.02e-06 1.98e-06 8.57e-07 7.39e-07
ENSG00000226147 TUBBP10 -231359 1.58e-06 1.47e-06 2.52e-07 1.27e-06 4.85e-07 6.46e-07 1.32e-06 4.02e-07 1.7e-06 7.18e-07 2e-06 1.2e-06 2.57e-06 4.19e-07 3.63e-07 9.88e-07 1.14e-06 1.16e-06 5.54e-07 5.88e-07 6.18e-07 1.87e-06 1.4e-06 8.04e-07 2.35e-06 9.28e-07 1.06e-06 1.07e-06 1.67e-06 1.32e-06 8.65e-07 2.49e-07 3.76e-07 6.25e-07 6.86e-07 6.39e-07 7.4e-07 3.66e-07 5.35e-07 2.28e-07 2.74e-07 2.07e-06 2.91e-07 1.33e-07 3.62e-07 3.24e-07 3.5e-07 1.97e-07 2.8e-07