Genes within 1Mb (chr1:52465026:T:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 586089 sc-eQTL 9.40e-01 -0.014 0.185 0.052 PB L2
ENSG00000085832 EPS15 945760 sc-eQTL 2.74e-01 0.289 0.263 0.052 PB L2
ENSG00000116157 GPX7 -137345 sc-eQTL 9.24e-01 0.0195 0.205 0.052 PB L2
ENSG00000116171 SCP2 -462250 sc-eQTL 7.67e-01 -0.0527 0.178 0.052 PB L2
ENSG00000117859 OSBPL9 887847 sc-eQTL 3.79e-01 -0.193 0.219 0.052 PB L2
ENSG00000117862 TXNDC12 408855 sc-eQTL 4.67e-01 0.119 0.163 0.052 PB L2
ENSG00000121310 ECHDC2 -462186 sc-eQTL 8.68e-02 -0.451 0.261 0.052 PB L2
ENSG00000134717 BTF3L4 408827 sc-eQTL 3.39e-01 0.252 0.262 0.052 PB L2
ENSG00000134744 TUT4 -88461 sc-eQTL 6.55e-01 -0.108 0.242 0.052 PB L2
ENSG00000134748 PRPF38A 60424 sc-eQTL 4.61e-01 -0.168 0.228 0.052 PB L2
ENSG00000154222 CC2D1B 98833 sc-eQTL 3.47e-01 -0.236 0.25 0.052 PB L2
ENSG00000157184 CPT2 -731766 sc-eQTL 7.18e-01 0.0824 0.227 0.052 PB L2
ENSG00000157193 LRP8 -863443 sc-eQTL 5.73e-01 0.136 0.24 0.052 PB L2
ENSG00000162377 COA7 -233321 sc-eQTL 8.12e-01 -0.0557 0.234 0.052 PB L2
ENSG00000162378 ZYG11B -261427 sc-eQTL 2.26e-01 -0.31 0.254 0.052 PB L2
ENSG00000162384 CZIB -755608 sc-eQTL 5.27e-02 0.483 0.247 0.052 PB L2
ENSG00000162385 MAGOH -773492 sc-eQTL 1.30e-01 0.35 0.23 0.052 PB L2
ENSG00000182183 SHISAL2A -168142 sc-eQTL 5.81e-01 0.117 0.212 0.052 PB L2
ENSG00000198841 KTI12 431216 sc-eQTL 1.43e-01 -0.352 0.238 0.052 PB L2
ENSG00000230138 LINC02812 -903219 sc-eQTL 8.97e-01 0.0242 0.187 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121310 ECHDC2 -462186 eQTL 0.0163 -0.108 0.045 0.0 0.0 0.0393
ENSG00000162385 MAGOH -773492 eQTL 0.0291 -0.0675 0.0309 0.0 0.0 0.0393
ENSG00000182183 SHISAL2A -168142 eQTL 0.00539 0.122 0.0438 0.0 0.0 0.0393
ENSG00000226147 TUBBP10 -529700 eQTL 0.0114 -0.255 0.101 0.0 0.0 0.0393
ENSG00000228407 AL139156.2 304426 eQTL 0.113 0.11 0.069 0.00103 0.0 0.0393
ENSG00000236973 GAPDHP51 756889 eQTL 0.032 -0.166 0.0771 0.00211 0.0 0.0393


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116157 \N -137345 4.65e-06 4.67e-06 6.05e-07 1.87e-06 7.24e-07 1.21e-06 2.95e-06 8.45e-07 3.03e-06 1.7e-06 4.22e-06 2.51e-06 6.44e-06 1.91e-06 9.86e-07 2.3e-06 1.79e-06 2.26e-06 1.42e-06 1.23e-06 2.06e-06 3.92e-06 3.34e-06 1.66e-06 5.08e-06 1.22e-06 2.15e-06 1.74e-06 3.88e-06 3.44e-06 1.93e-06 3.1e-07 5.96e-07 1.35e-06 1.93e-06 9.09e-07 9.41e-07 4.89e-07 1.17e-06 3.8e-07 2.11e-07 5.14e-06 4.02e-07 1.95e-07 3.45e-07 3.64e-07 8.3e-07 2.32e-07 1.76e-07
ENSG00000121310 ECHDC2 -462186 1.31e-06 5.6e-07 9.89e-08 3.81e-07 9.93e-08 2.16e-07 5.65e-07 8.37e-08 3.82e-07 2.28e-07 6.56e-07 3.48e-07 7.36e-07 1.34e-07 1.71e-07 2.18e-07 2.77e-07 3.56e-07 2.12e-07 9.01e-08 2.01e-07 3.87e-07 3.7e-07 1.29e-07 9.15e-07 2.33e-07 2.72e-07 1.97e-07 3.58e-07 4.9e-07 3.32e-07 8.32e-08 5.77e-08 1.16e-07 3.42e-07 6.85e-08 1.01e-07 7.93e-08 5.28e-08 5.64e-08 1.01e-07 5.96e-07 5.44e-08 1.9e-08 1.41e-07 1.91e-08 7.89e-08 1.11e-08 5.65e-08
ENSG00000154222 \N 98833 6.66e-06 6.26e-06 7.3e-07 3.42e-06 1.62e-06 1.57e-06 6.83e-06 9.78e-07 5.06e-06 2.81e-06 7.5e-06 3.2e-06 8.24e-06 2.13e-06 1.21e-06 3.98e-06 2.24e-06 3.95e-06 1.55e-06 1.14e-06 2.77e-06 5.38e-06 4.6e-06 1.42e-06 9.01e-06 2.01e-06 2.51e-06 1.81e-06 4.51e-06 5.28e-06 2.73e-06 5.26e-07 6.11e-07 1.44e-06 2.03e-06 1.11e-06 1.08e-06 4.51e-07 9.68e-07 3.22e-07 4.4e-07 7.76e-06 9.07e-07 1.85e-07 5.95e-07 9.82e-07 1.13e-06 5.05e-07 4.54e-07
ENSG00000182183 SHISAL2A -168142 4.16e-06 3.09e-06 3.19e-07 2.01e-06 4.94e-07 8.17e-07 2.28e-06 5.6e-07 1.91e-06 1.09e-06 3.01e-06 1.46e-06 3.69e-06 1.43e-06 8.73e-07 1.66e-06 1.55e-06 2.3e-06 1.13e-06 1.13e-06 1.44e-06 3.09e-06 2.51e-06 1e-06 4.25e-06 1.27e-06 1.47e-06 1.42e-06 2.28e-06 2.24e-06 1.99e-06 2.7e-07 4.59e-07 1.24e-06 1.65e-06 8.65e-07 8.03e-07 4.46e-07 7.04e-07 1.86e-07 3.2e-07 4.16e-06 4.64e-07 1.99e-07 3.6e-07 3.15e-07 6.93e-07 2.34e-07 2.1e-07