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Genes within 1Mb (chr1:51968738:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 89801 sc-eQTL 1.13e-01 0.291 0.182 0.056 PB L2
ENSG00000085832 EPS15 449472 sc-eQTL 6.85e-01 -0.107 0.263 0.056 PB L2
ENSG00000116157 GPX7 -633633 sc-eQTL 2.24e-02 0.462 0.2 0.056 PB L2
ENSG00000116171 SCP2 -958538 sc-eQTL 5.22e-01 0.113 0.177 0.056 PB L2
ENSG00000117859 OSBPL9 391559 sc-eQTL 2.31e-01 -0.262 0.218 0.056 PB L2
ENSG00000117862 TXNDC12 -87433 sc-eQTL 4.88e-01 0.113 0.162 0.056 PB L2
ENSG00000121310 ECHDC2 -958474 sc-eQTL 3.60e-01 0.241 0.262 0.056 PB L2
ENSG00000123091 RNF11 732465 sc-eQTL 2.70e-01 0.283 0.256 0.056 PB L2
ENSG00000134717 BTF3L4 -87461 sc-eQTL 3.12e-01 -0.265 0.261 0.056 PB L2
ENSG00000134744 TUT4 -584749 sc-eQTL 3.98e-01 0.204 0.24 0.056 PB L2
ENSG00000134748 PRPF38A -435864 sc-eQTL 6.45e-01 0.105 0.227 0.056 PB L2
ENSG00000154222 CC2D1B -397455 sc-eQTL 1.16e-01 0.391 0.247 0.056 PB L2
ENSG00000162377 COA7 -729609 sc-eQTL 4.52e-01 -0.175 0.233 0.056 PB L2
ENSG00000162378 ZYG11B -757715 sc-eQTL 3.49e-01 0.239 0.254 0.056 PB L2
ENSG00000182183 SHISAL2A -664430 sc-eQTL 8.17e-01 -0.0492 0.212 0.056 PB L2
ENSG00000198841 KTI12 -65072 sc-eQTL 6.32e-01 -0.115 0.24 0.056 PB L2
ENSG00000078618 NRDC 89801 sc-eQTL 9.22e-01 0.0201 0.204 0.051 cDC L2
ENSG00000085831 TTC39A 623622 sc-eQTL 6.40e-01 -0.0311 0.0664 0.051 cDC L2
ENSG00000085832 EPS15 449472 sc-eQTL 7.19e-01 0.0817 0.227 0.051 cDC L2
ENSG00000116157 GPX7 -633633 sc-eQTL 5.57e-02 0.359 0.186 0.051 cDC L2
ENSG00000116171 SCP2 -958538 sc-eQTL 1.49e-01 0.266 0.184 0.051 cDC L2
ENSG00000117859 OSBPL9 391559 sc-eQTL 1.13e-01 0.33 0.207 0.051 cDC L2
ENSG00000117862 TXNDC12 -87433 sc-eQTL 3.66e-01 0.18 0.198 0.051 cDC L2
ENSG00000121310 ECHDC2 -958474 sc-eQTL 4.20e-02 0.434 0.212 0.051 cDC L2
ENSG00000123091 RNF11 732465 sc-eQTL 2.96e-01 0.231 0.221 0.051 cDC L2
ENSG00000134717 BTF3L4 -87461 sc-eQTL 8.36e-01 0.0417 0.201 0.051 cDC L2
ENSG00000134744 TUT4 -584749 sc-eQTL 6.82e-02 0.406 0.221 0.051 cDC L2
ENSG00000134748 PRPF38A -435864 sc-eQTL 7.01e-01 -0.0789 0.205 0.051 cDC L2
ENSG00000154222 CC2D1B -397455 sc-eQTL 7.37e-01 0.0751 0.223 0.051 cDC L2
ENSG00000162377 COA7 -729609 sc-eQTL 5.92e-01 -0.114 0.212 0.051 cDC L2
ENSG00000162378 ZYG11B -757715 sc-eQTL 5.21e-02 0.432 0.221 0.051 cDC L2
ENSG00000198841 KTI12 -65072 sc-eQTL 7.32e-01 0.072 0.21 0.051 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 89801 eQTL 0.00149 -0.0618 0.0194 0.0 0.0 0.0412
ENSG00000116157 GPX7 -633633 eQTL 1.04e-11 0.42 0.0609 0.0 0.0 0.0412
ENSG00000134748 PRPF38A -435864 eQTL 1.44e-02 0.115 0.0471 0.00165 0.0 0.0412
ENSG00000154222 CC2D1B -397455 eQTL 6.68e-13 0.311 0.0427 0.0 0.0 0.0412
ENSG00000182183 SHISAL2A -664430 eQTL 0.00835 0.112 0.0426 0.0 0.0 0.0412
ENSG00000266993 AL050343.1 174804 eQTL 0.000228 -0.2 0.0539 0.0 0.0 0.0412

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 89801 1e-05 9.73e-06 1.36e-06 4.87e-06 2.04e-06 4.19e-06 9.57e-06 1.31e-06 5.25e-06 4.24e-06 9.35e-06 4.5e-06 1.16e-05 3.78e-06 3.17e-06 5.73e-06 3.7e-06 3.97e-06 2.48e-06 2.62e-06 4.39e-06 8e-06 7.23e-06 2.56e-06 1.25e-05 2.37e-06 4.36e-06 3.19e-06 8.8e-06 7.87e-06 4.13e-06 4.18e-07 1.09e-06 3.14e-06 3.31e-06 1.7e-06 1.3e-06 1.45e-06 1.38e-06 8.9e-07 4.48e-07 1.3e-05 1.31e-06 1.99e-07 6.7e-07 1.96e-06 8.75e-07 6.95e-07 5.6e-07
ENSG00000116157 GPX7 -633633 3.07e-07 1.5e-07 6.42e-08 2.54e-07 9.87e-08 8.75e-08 1.67e-07 5.4e-08 1.45e-07 6.08e-08 1.57e-07 8.68e-08 1.87e-07 8.07e-08 6.6e-08 7.49e-08 4.17e-08 1.51e-07 7.18e-08 5.35e-08 1.22e-07 1.24e-07 1.62e-07 2.93e-08 1.85e-07 1.21e-07 1.07e-07 1.04e-07 1.22e-07 1.03e-07 1.08e-07 2.96e-08 3.96e-08 1.25e-07 5.24e-08 2.95e-08 3.91e-08 8.61e-08 6.62e-08 7.78e-08 5.45e-08 1.79e-07 5.12e-08 7.66e-09 6.38e-08 1.29e-08 1.21e-07 3.95e-09 4.88e-08
ENSG00000134748 PRPF38A -435864 9.14e-07 5.67e-07 1.48e-07 3.81e-07 1.07e-07 3.11e-07 4.53e-07 6.75e-08 2.6e-07 2.06e-07 3.97e-07 2.22e-07 7.02e-07 1.6e-07 3.16e-07 1.46e-07 8.53e-08 3.39e-07 2.12e-07 1.69e-07 1.6e-07 2.63e-07 3.3e-07 7.36e-08 7.01e-07 2.13e-07 1.78e-07 2.19e-07 2.78e-07 3.93e-07 2e-07 6.78e-08 5.53e-08 5.46e-07 3.52e-07 7.56e-08 8.52e-08 8.33e-08 6.58e-08 8.43e-09 3.43e-08 9.49e-07 2.8e-08 1.7e-08 3.07e-08 1.19e-07 9.25e-08 0.0 4.74e-08
ENSG00000154222 CC2D1B -397455 1.25e-06 6.97e-07 2.52e-07 3.65e-07 1.05e-07 3.2e-07 5.76e-07 7.79e-08 3.66e-07 2.62e-07 6.39e-07 3.36e-07 9.79e-07 1.97e-07 4.21e-07 2.08e-07 1.73e-07 4.11e-07 2.79e-07 2.63e-07 1.87e-07 3.71e-07 4.08e-07 1.29e-07 1.14e-06 2.34e-07 2.57e-07 2.73e-07 4.15e-07 6.19e-07 2.93e-07 7.33e-08 5.19e-08 6.76e-07 3.28e-07 1.36e-07 1.94e-07 1.03e-07 7.56e-08 1.98e-08 8.09e-08 1.3e-06 4.71e-08 1.88e-08 3.34e-08 2.33e-07 8.01e-08 2.89e-09 5.05e-08
ENSG00000266993 AL050343.1 174804 4.79e-06 4.65e-06 8.95e-07 2.42e-06 7.91e-07 1.66e-06 2.41e-06 4.99e-07 1.88e-06 1.46e-06 3.02e-06 1.77e-06 5.73e-06 2.3e-06 1.43e-06 1.98e-06 1.32e-06 2.15e-06 1.37e-06 9.91e-07 1.41e-06 3.4e-06 3.5e-06 1.32e-06 4.72e-06 1.09e-06 1.47e-06 1.69e-06 3.8e-06 2.29e-06 2.08e-06 2.2e-07 5.68e-07 1.62e-06 1.74e-06 9.27e-07 9.38e-07 4.76e-07 1.32e-06 3.64e-07 2.14e-07 5.66e-06 4.81e-07 9e-08 4.11e-07 9.44e-07 8.09e-07 2.07e-07 1.58e-07