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Genes within 1Mb (chr1:51950468:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 71531 sc-eQTL 4.01e-01 -0.204 0.242 0.056 B_Activated L2
ENSG00000085832 EPS15 431202 sc-eQTL 1.40e-01 0.339 0.228 0.056 B_Activated L2
ENSG00000116157 GPX7 -651903 sc-eQTL 7.68e-01 -0.0656 0.222 0.056 B_Activated L2
ENSG00000116171 SCP2 -976808 sc-eQTL 7.64e-01 0.063 0.209 0.056 B_Activated L2
ENSG00000117859 OSBPL9 373289 sc-eQTL 5.66e-01 0.137 0.239 0.056 B_Activated L2
ENSG00000117862 TXNDC12 -105703 sc-eQTL 7.84e-01 -0.0625 0.228 0.056 B_Activated L2
ENSG00000121310 ECHDC2 -976744 sc-eQTL 7.28e-01 -0.082 0.235 0.056 B_Activated L2
ENSG00000123080 CDKN2C 989723 sc-eQTL 2.40e-01 -0.205 0.174 0.056 B_Activated L2
ENSG00000123091 RNF11 714195 sc-eQTL 2.81e-01 0.232 0.215 0.056 B_Activated L2
ENSG00000134717 BTF3L4 -105731 sc-eQTL 5.89e-01 -0.13 0.24 0.056 B_Activated L2
ENSG00000134744 TUT4 -603019 sc-eQTL 5.62e-01 0.129 0.223 0.056 B_Activated L2
ENSG00000134748 PRPF38A -454134 sc-eQTL 2.97e-01 0.236 0.225 0.056 B_Activated L2
ENSG00000154222 CC2D1B -415725 sc-eQTL 2.82e-01 -0.237 0.22 0.056 B_Activated L2
ENSG00000162377 COA7 -747879 sc-eQTL 4.83e-02 0.369 0.186 0.056 B_Activated L2
ENSG00000162378 ZYG11B -775985 sc-eQTL 9.17e-01 -0.0241 0.23 0.056 B_Activated L2
ENSG00000182183 SHISAL2A -682700 sc-eQTL 2.70e-02 0.445 0.199 0.056 B_Activated L2
ENSG00000185104 FAF1 990201 sc-eQTL 2.43e-01 0.253 0.216 0.056 B_Activated L2
ENSG00000198841 KTI12 -83342 sc-eQTL 6.29e-01 -0.0935 0.193 0.056 B_Activated L2
ENSG00000078618 NRDC 71531 sc-eQTL 2.15e-01 -0.259 0.208 0.05 CD8_TEM L2
ENSG00000085832 EPS15 431202 sc-eQTL 2.63e-01 -0.213 0.19 0.05 CD8_TEM L2
ENSG00000116157 GPX7 -651903 sc-eQTL 1.31e-01 0.315 0.208 0.05 CD8_TEM L2
ENSG00000116171 SCP2 -976808 sc-eQTL 1.26e-01 -0.271 0.176 0.05 CD8_TEM L2
ENSG00000117859 OSBPL9 373289 sc-eQTL 9.87e-01 -0.00353 0.224 0.05 CD8_TEM L2
ENSG00000117862 TXNDC12 -105703 sc-eQTL 9.92e-01 0.00191 0.202 0.05 CD8_TEM L2
ENSG00000121310 ECHDC2 -976744 sc-eQTL 7.13e-01 -0.0828 0.225 0.05 CD8_TEM L2
ENSG00000123080 CDKN2C 989723 sc-eQTL 6.38e-01 -0.0995 0.211 0.05 CD8_TEM L2
ENSG00000123091 RNF11 714195 sc-eQTL 8.40e-01 -0.0435 0.215 0.05 CD8_TEM L2
ENSG00000134717 BTF3L4 -105731 sc-eQTL 4.12e-01 0.179 0.218 0.05 CD8_TEM L2
ENSG00000134744 TUT4 -603019 sc-eQTL 7.08e-02 0.361 0.199 0.05 CD8_TEM L2
ENSG00000134748 PRPF38A -454134 sc-eQTL 9.52e-02 0.348 0.207 0.05 CD8_TEM L2
ENSG00000154222 CC2D1B -415725 sc-eQTL 4.71e-01 0.15 0.207 0.05 CD8_TEM L2
ENSG00000157077 ZFYVE9 -191626 sc-eQTL 2.59e-01 0.213 0.188 0.05 CD8_TEM L2
ENSG00000162378 ZYG11B -775985 sc-eQTL 8.04e-01 0.0527 0.212 0.05 CD8_TEM L2
ENSG00000182183 SHISAL2A -682700 sc-eQTL 6.69e-01 -0.0859 0.201 0.05 CD8_TEM L2
ENSG00000185104 FAF1 990201 sc-eQTL 5.16e-01 -0.137 0.211 0.05 CD8_TEM L2
ENSG00000198841 KTI12 -83342 sc-eQTL 9.40e-01 0.0157 0.209 0.05 CD8_TEM L2
ENSG00000078618 NRDC 71531 sc-eQTL 9.40e-01 -0.0143 0.189 0.059 PB L2
ENSG00000085832 EPS15 431202 sc-eQTL 4.40e-01 -0.209 0.269 0.059 PB L2
ENSG00000116157 GPX7 -651903 sc-eQTL 7.77e-02 0.368 0.207 0.059 PB L2
ENSG00000116171 SCP2 -976808 sc-eQTL 9.31e-01 -0.0157 0.182 0.059 PB L2
ENSG00000117859 OSBPL9 373289 sc-eQTL 8.95e-02 0.38 0.222 0.059 PB L2
ENSG00000117862 TXNDC12 -105703 sc-eQTL 8.18e-01 0.0384 0.167 0.059 PB L2
ENSG00000121310 ECHDC2 -976744 sc-eQTL 6.80e-01 0.112 0.27 0.059 PB L2
ENSG00000123080 CDKN2C 989723 sc-eQTL 1.28e-01 0.291 0.19 0.059 PB L2
ENSG00000123091 RNF11 714195 sc-eQTL 2.73e-01 0.289 0.262 0.059 PB L2
ENSG00000134717 BTF3L4 -105731 sc-eQTL 1.74e-01 -0.365 0.267 0.059 PB L2
ENSG00000134744 TUT4 -603019 sc-eQTL 3.07e-01 0.253 0.246 0.059 PB L2
ENSG00000134748 PRPF38A -454134 sc-eQTL 9.47e-01 0.0157 0.233 0.059 PB L2
ENSG00000154222 CC2D1B -415725 sc-eQTL 4.32e-02 0.515 0.252 0.059 PB L2
ENSG00000162377 COA7 -747879 sc-eQTL 4.03e-01 -0.2 0.239 0.059 PB L2
ENSG00000162378 ZYG11B -775985 sc-eQTL 2.63e-01 -0.293 0.26 0.059 PB L2
ENSG00000182183 SHISAL2A -682700 sc-eQTL 7.69e-01 0.0641 0.217 0.059 PB L2
ENSG00000185104 FAF1 990201 sc-eQTL 1.27e-01 -0.39 0.254 0.059 PB L2
ENSG00000198841 KTI12 -83342 sc-eQTL 6.14e-02 0.458 0.242 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 71531 eQTL 2.03e-09 -0.0822 0.0136 0.0 0.00232 0.0839
ENSG00000116157 GPX7 -651903 eQTL 1.54e-20 0.402 0.0423 0.0 0.0 0.0839
ENSG00000117859 OSBPL9 373289 eQTL 4.61e-14 0.18 0.0235 0.0 0.0 0.0839
ENSG00000117862 TXNDC12 -105703 eQTL 0.00366 -0.0577 0.0198 0.0 0.0 0.0839
ENSG00000123091 RNF11 714195 eQTL 0.0358 0.0485 0.0231 0.00142 0.0 0.0839
ENSG00000134744 TUT4 -603019 eQTL 1.95e-03 0.0721 0.0232 0.0037 0.00304 0.0839
ENSG00000154222 CC2D1B -415725 eQTL 2.42e-26 0.321 0.0293 0.0 0.0 0.0839
ENSG00000198841 KTI12 -83348 eQTL 1.32e-05 -0.13 0.0296 0.0 0.0 0.0839
ENSG00000232027 AL671986.1 578198 eQTL 0.0483 -0.124 0.0629 0.00155 0.0 0.0839
ENSG00000236973 GAPDHP51 242331 eQTL 0.0318 0.114 0.0531 0.00136 0.0 0.0839

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 71531 5.85e-06 7.69e-06 1.04e-06 3.81e-06 2.21e-06 2.48e-06 9.53e-06 1.58e-06 5.94e-06 4.1e-06 8.9e-06 3.63e-06 1.12e-05 3.17e-06 1.67e-06 5.24e-06 3.71e-06 4.39e-06 2.55e-06 2.57e-06 3.72e-06 7.65e-06 6.24e-06 2.83e-06 1.08e-05 2.97e-06 3.82e-06 2.61e-06 7.53e-06 7.71e-06 3.95e-06 7.64e-07 1.18e-06 2.88e-06 2.6e-06 2.12e-06 1.55e-06 1.56e-06 1.59e-06 1.02e-06 9.98e-07 8.25e-06 8.16e-07 2.07e-07 7.53e-07 1.32e-06 9.55e-07 7.28e-07 4.89e-07
ENSG00000085831 \N 605352 3.14e-07 1.59e-07 6.41e-08 2.26e-07 1.08e-07 8.89e-08 2.4e-07 6.2e-08 1.85e-07 1.03e-07 1.83e-07 1.31e-07 2.29e-07 8.07e-08 5.97e-08 9.11e-08 5.57e-08 2.04e-07 7.29e-08 5.87e-08 1.24e-07 1.7e-07 1.69e-07 4.07e-08 2.28e-07 1.65e-07 1.22e-07 1.26e-07 1.34e-07 1.36e-07 1.22e-07 4.69e-08 3.74e-08 9.3e-08 4.04e-08 2.74e-08 3.7e-08 7.51e-08 6.35e-08 5.96e-08 5.94e-08 1.6e-07 4.17e-08 7.18e-09 3.3e-08 8.31e-09 7.61e-08 2e-09 4.67e-08
ENSG00000116157 GPX7 -651903 2.95e-07 1.53e-07 6.04e-08 2.07e-07 1.01e-07 8.33e-08 2.1e-07 5.78e-08 1.59e-07 8.53e-08 1.61e-07 1.2e-07 1.95e-07 8.13e-08 5.43e-08 8.08e-08 4.35e-08 1.77e-07 7.09e-08 5.2e-08 1.22e-07 1.47e-07 1.58e-07 3.58e-08 2.02e-07 1.39e-07 1.17e-07 1.12e-07 1.32e-07 1.1e-07 1.14e-07 3.9e-08 3.29e-08 9.78e-08 3.07e-08 3.07e-08 4.62e-08 8.57e-08 6.41e-08 4.24e-08 5.05e-08 1.59e-07 5.22e-08 1.43e-08 3.32e-08 1.71e-08 8.46e-08 1.92e-09 4.69e-08
ENSG00000117859 OSBPL9 373289 9.83e-07 6.81e-07 1.5e-07 4.36e-07 1.07e-07 2.67e-07 6.29e-07 2.28e-07 6.71e-07 3.1e-07 1.02e-06 4.75e-07 9.77e-07 1.58e-07 3.13e-07 3.35e-07 5.63e-07 4.16e-07 2.88e-07 1.78e-07 2.49e-07 5.11e-07 4.4e-07 2.89e-07 1.16e-06 2.52e-07 4e-07 3.24e-07 5.7e-07 7.71e-07 3.79e-07 3.99e-08 4.98e-08 1.88e-07 3.44e-07 1.61e-07 1.31e-07 1.21e-07 7.5e-08 1.6e-08 1.09e-07 7.52e-07 4.59e-08 1.22e-08 1.99e-07 2.07e-08 1.19e-07 2.35e-08 6.32e-08
ENSG00000154222 CC2D1B -415725 8.15e-07 5.67e-07 1.04e-07 3.62e-07 1.18e-07 1.97e-07 5.54e-07 1.54e-07 4.61e-07 2.37e-07 7.15e-07 3.68e-07 7.19e-07 1.23e-07 2.14e-07 2.23e-07 3.69e-07 4.11e-07 2.13e-07 1.43e-07 2.05e-07 3.87e-07 3.69e-07 1.76e-07 7.71e-07 2.68e-07 2.56e-07 2.65e-07 4.13e-07 5.82e-07 3.1e-07 6.56e-08 4.49e-08 1.49e-07 3.03e-07 7.57e-08 1.02e-07 9.46e-08 5.93e-08 2.53e-08 8.29e-08 5.29e-07 2.8e-08 1.62e-08 1.34e-07 1.25e-08 1.01e-07 1.11e-08 6.03e-08
ENSG00000198841 KTI12 -83348 5.21e-06 5.78e-06 7.05e-07 3.37e-06 1.82e-06 1.53e-06 8.29e-06 1.29e-06 4.68e-06 3.25e-06 8.01e-06 2.95e-06 9.82e-06 2.18e-06 1.01e-06 4.32e-06 3e-06 3.8e-06 2.11e-06 1.8e-06 3.02e-06 6.71e-06 5.12e-06 2.06e-06 9.12e-06 2.35e-06 3.09e-06 1.9e-06 6.73e-06 7.15e-06 3.24e-06 5.11e-07 8e-07 2.78e-06 1.95e-06 1.71e-06 1.19e-06 9.43e-07 1.36e-06 8.28e-07 1.03e-06 7.99e-06 6.29e-07 1.59e-07 6.99e-07 8.07e-07 1.02e-06 6.26e-07 6.14e-07
ENSG00000232027 AL671986.1 578198 3.27e-07 1.76e-07 6.45e-08 2.27e-07 1.03e-07 8.4e-08 2.63e-07 6.75e-08 1.94e-07 1.11e-07 2.04e-07 1.48e-07 2.45e-07 8.44e-08 6.2e-08 9.35e-08 6.63e-08 2.33e-07 7.27e-08 5.61e-08 1.27e-07 1.89e-07 1.73e-07 4.15e-08 2.48e-07 1.76e-07 1.31e-07 1.36e-07 1.44e-07 1.58e-07 1.27e-07 4.43e-08 3.8e-08 9.72e-08 5.24e-08 3.18e-08 5.02e-08 6.98e-08 6.29e-08 6.55e-08 5.36e-08 1.63e-07 3.4e-08 7.32e-09 3.71e-08 6.68e-09 7.13e-08 2.07e-09 4.83e-08