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Genes within 1Mb (chr1:51942017:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 63080 sc-eQTL 4.01e-01 -0.204 0.242 0.056 B_Activated L2
ENSG00000085832 EPS15 422751 sc-eQTL 1.40e-01 0.339 0.228 0.056 B_Activated L2
ENSG00000116157 GPX7 -660354 sc-eQTL 7.68e-01 -0.0656 0.222 0.056 B_Activated L2
ENSG00000116171 SCP2 -985259 sc-eQTL 7.64e-01 0.063 0.209 0.056 B_Activated L2
ENSG00000117859 OSBPL9 364838 sc-eQTL 5.66e-01 0.137 0.239 0.056 B_Activated L2
ENSG00000117862 TXNDC12 -114154 sc-eQTL 7.84e-01 -0.0625 0.228 0.056 B_Activated L2
ENSG00000121310 ECHDC2 -985195 sc-eQTL 7.28e-01 -0.082 0.235 0.056 B_Activated L2
ENSG00000123080 CDKN2C 981272 sc-eQTL 2.40e-01 -0.205 0.174 0.056 B_Activated L2
ENSG00000123091 RNF11 705744 sc-eQTL 2.81e-01 0.232 0.215 0.056 B_Activated L2
ENSG00000134717 BTF3L4 -114182 sc-eQTL 5.89e-01 -0.13 0.24 0.056 B_Activated L2
ENSG00000134744 TUT4 -611470 sc-eQTL 5.62e-01 0.129 0.223 0.056 B_Activated L2
ENSG00000134748 PRPF38A -462585 sc-eQTL 2.97e-01 0.236 0.225 0.056 B_Activated L2
ENSG00000154222 CC2D1B -424176 sc-eQTL 2.82e-01 -0.237 0.22 0.056 B_Activated L2
ENSG00000162377 COA7 -756330 sc-eQTL 4.83e-02 0.369 0.186 0.056 B_Activated L2
ENSG00000162378 ZYG11B -784436 sc-eQTL 9.17e-01 -0.0241 0.23 0.056 B_Activated L2
ENSG00000182183 SHISAL2A -691151 sc-eQTL 2.70e-02 0.445 0.199 0.056 B_Activated L2
ENSG00000185104 FAF1 981750 sc-eQTL 2.43e-01 0.253 0.216 0.056 B_Activated L2
ENSG00000198841 KTI12 -91793 sc-eQTL 6.29e-01 -0.0935 0.193 0.056 B_Activated L2
ENSG00000078618 NRDC 63080 sc-eQTL 2.15e-01 -0.259 0.208 0.05 CD8_TEM L2
ENSG00000085832 EPS15 422751 sc-eQTL 2.63e-01 -0.213 0.19 0.05 CD8_TEM L2
ENSG00000116157 GPX7 -660354 sc-eQTL 1.31e-01 0.315 0.208 0.05 CD8_TEM L2
ENSG00000116171 SCP2 -985259 sc-eQTL 1.26e-01 -0.271 0.176 0.05 CD8_TEM L2
ENSG00000117859 OSBPL9 364838 sc-eQTL 9.87e-01 -0.00353 0.224 0.05 CD8_TEM L2
ENSG00000117862 TXNDC12 -114154 sc-eQTL 9.92e-01 0.00191 0.202 0.05 CD8_TEM L2
ENSG00000121310 ECHDC2 -985195 sc-eQTL 7.13e-01 -0.0828 0.225 0.05 CD8_TEM L2
ENSG00000123080 CDKN2C 981272 sc-eQTL 6.38e-01 -0.0995 0.211 0.05 CD8_TEM L2
ENSG00000123091 RNF11 705744 sc-eQTL 8.40e-01 -0.0435 0.215 0.05 CD8_TEM L2
ENSG00000134717 BTF3L4 -114182 sc-eQTL 4.12e-01 0.179 0.218 0.05 CD8_TEM L2
ENSG00000134744 TUT4 -611470 sc-eQTL 7.08e-02 0.361 0.199 0.05 CD8_TEM L2
ENSG00000134748 PRPF38A -462585 sc-eQTL 9.52e-02 0.348 0.207 0.05 CD8_TEM L2
ENSG00000154222 CC2D1B -424176 sc-eQTL 4.71e-01 0.15 0.207 0.05 CD8_TEM L2
ENSG00000157077 ZFYVE9 -200077 sc-eQTL 2.59e-01 0.213 0.188 0.05 CD8_TEM L2
ENSG00000162378 ZYG11B -784436 sc-eQTL 8.04e-01 0.0527 0.212 0.05 CD8_TEM L2
ENSG00000182183 SHISAL2A -691151 sc-eQTL 6.69e-01 -0.0859 0.201 0.05 CD8_TEM L2
ENSG00000185104 FAF1 981750 sc-eQTL 5.16e-01 -0.137 0.211 0.05 CD8_TEM L2
ENSG00000198841 KTI12 -91793 sc-eQTL 9.40e-01 0.0157 0.209 0.05 CD8_TEM L2
ENSG00000078618 NRDC 63080 sc-eQTL 9.40e-01 -0.0143 0.189 0.059 PB L2
ENSG00000085832 EPS15 422751 sc-eQTL 4.40e-01 -0.209 0.269 0.059 PB L2
ENSG00000116157 GPX7 -660354 sc-eQTL 7.77e-02 0.368 0.207 0.059 PB L2
ENSG00000116171 SCP2 -985259 sc-eQTL 9.31e-01 -0.0157 0.182 0.059 PB L2
ENSG00000117859 OSBPL9 364838 sc-eQTL 8.95e-02 0.38 0.222 0.059 PB L2
ENSG00000117862 TXNDC12 -114154 sc-eQTL 8.18e-01 0.0384 0.167 0.059 PB L2
ENSG00000121310 ECHDC2 -985195 sc-eQTL 6.80e-01 0.112 0.27 0.059 PB L2
ENSG00000123080 CDKN2C 981272 sc-eQTL 1.28e-01 0.291 0.19 0.059 PB L2
ENSG00000123091 RNF11 705744 sc-eQTL 2.73e-01 0.289 0.262 0.059 PB L2
ENSG00000134717 BTF3L4 -114182 sc-eQTL 1.74e-01 -0.365 0.267 0.059 PB L2
ENSG00000134744 TUT4 -611470 sc-eQTL 3.07e-01 0.253 0.246 0.059 PB L2
ENSG00000134748 PRPF38A -462585 sc-eQTL 9.47e-01 0.0157 0.233 0.059 PB L2
ENSG00000154222 CC2D1B -424176 sc-eQTL 4.32e-02 0.515 0.252 0.059 PB L2
ENSG00000162377 COA7 -756330 sc-eQTL 4.03e-01 -0.2 0.239 0.059 PB L2
ENSG00000162378 ZYG11B -784436 sc-eQTL 2.63e-01 -0.293 0.26 0.059 PB L2
ENSG00000182183 SHISAL2A -691151 sc-eQTL 7.69e-01 0.0641 0.217 0.059 PB L2
ENSG00000185104 FAF1 981750 sc-eQTL 1.27e-01 -0.39 0.254 0.059 PB L2
ENSG00000198841 KTI12 -91793 sc-eQTL 6.14e-02 0.458 0.242 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 63080 eQTL 2.02e-09 -0.0822 0.0136 0.0 0.0023 0.0839
ENSG00000116157 GPX7 -660354 eQTL 1.71e-20 0.402 0.0423 0.0 0.0 0.0839
ENSG00000117859 OSBPL9 364838 eQTL 4.06e-14 0.18 0.0235 0.0 0.0 0.0839
ENSG00000117862 TXNDC12 -114154 eQTL 0.00359 -0.0578 0.0198 0.0 0.0 0.0839
ENSG00000123091 RNF11 705744 eQTL 0.0354 0.0486 0.0231 0.00143 0.0 0.0839
ENSG00000134744 TUT4 -611470 eQTL 1.95e-03 0.0721 0.0232 0.0037 0.00303 0.0839
ENSG00000154222 CC2D1B -424176 eQTL 2.7000000000000004e-26 0.321 0.0293 0.0 0.0 0.0839
ENSG00000198841 KTI12 -91799 eQTL 1.34e-05 -0.129 0.0296 0.0 0.0 0.0839
ENSG00000232027 AL671986.1 569747 eQTL 0.0473 -0.125 0.0628 0.00156 0.0 0.0839
ENSG00000236973 GAPDHP51 233880 eQTL 0.0322 0.114 0.0531 0.00135 0.0 0.0839

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 63080 1.3e-05 1.27e-05 9.68e-07 6.02e-06 1.69e-06 5.49e-06 1.06e-05 1.5e-06 9.51e-06 4.96e-06 1.4e-05 5.44e-06 1.82e-05 3.66e-06 2.11e-06 6.25e-06 4.38e-06 5.96e-06 2.63e-06 2.02e-06 4.63e-06 9e-06 7.18e-06 1.91e-06 1.65e-05 2.21e-06 5.04e-06 3.05e-06 8.17e-06 7.86e-06 6.75e-06 4.84e-07 7.24e-07 2.77e-06 4.3e-06 1.61e-06 1.18e-06 1.25e-06 1.41e-06 9.98e-07 6.18e-07 1.29e-05 1.4e-06 1.63e-07 4.86e-07 1.25e-06 1.32e-06 6.9e-07 4.23e-07
ENSG00000085831 \N 596901 9.83e-07 1.76e-07 5.35e-08 2.66e-07 9.87e-08 2.16e-07 3.11e-07 5.43e-08 1.66e-07 8.53e-08 2.04e-07 1.23e-07 3.04e-07 8.66e-08 6.12e-08 7.89e-08 4.18e-08 2.04e-07 7.27e-08 5.2e-08 1.22e-07 1.81e-07 1.58e-07 3.17e-08 3.7e-07 1.23e-07 1.31e-07 1.04e-07 1.39e-07 1.69e-07 1.43e-07 4.77e-08 3.21e-08 9.61e-08 6.78e-08 3.04e-08 6.24e-08 8.63e-08 6.71e-08 3.67e-08 5.05e-08 2.72e-07 5.22e-08 1.93e-08 5.19e-08 1.71e-08 8.74e-08 1.89e-09 4.79e-08
ENSG00000116157 GPX7 -660354 7.74e-07 1.53e-07 4.69e-08 2.45e-07 9.24e-08 1.57e-07 2.24e-07 5.4e-08 1.47e-07 6.08e-08 1.61e-07 1.08e-07 2.24e-07 8e-08 5.69e-08 7.5e-08 4.01e-08 1.64e-07 7.09e-08 4.3e-08 1.22e-07 1.42e-07 1.5e-07 3.03e-08 2.48e-07 1.21e-07 1.17e-07 9.74e-08 1.31e-07 1.17e-07 1.26e-07 3.78e-08 3.73e-08 9.5e-08 3.51e-08 3.6e-08 3.91e-08 9.36e-08 6.37e-08 3.92e-08 5.03e-08 1.79e-07 5.2e-08 1.73e-08 5.59e-08 1.89e-08 1.21e-07 3.79e-09 5.09e-08
ENSG00000117859 OSBPL9 364838 1.97e-06 9.03e-07 1.04e-07 7.96e-07 9.86e-08 6.42e-07 1.08e-06 1.4e-07 8.39e-07 3.11e-07 1.26e-06 5.39e-07 1.56e-06 2.72e-07 4.15e-07 3.35e-07 6.15e-07 5.12e-07 4e-07 1.78e-07 2.61e-07 8.11e-07 4.96e-07 1.91e-07 2.01e-06 2.71e-07 6.23e-07 2.63e-07 7.07e-07 1.06e-06 5.47e-07 3.99e-08 5.3e-08 4.57e-07 4.15e-07 8.17e-08 2.94e-07 1.09e-07 6.49e-08 1.57e-08 1.01e-07 1.57e-06 6.17e-08 5.7e-08 7.93e-08 3.87e-08 1.08e-07 1.11e-08 4.61e-08
ENSG00000154222 CC2D1B -424176 1.31e-06 6.78e-07 8.55e-08 3.54e-07 1.05e-07 5.95e-07 6.52e-07 7.98e-08 4.43e-07 2.34e-07 9.46e-07 3.62e-07 1.02e-06 1.76e-07 2.44e-07 1.96e-07 2.77e-07 4.2e-07 2.57e-07 1.17e-07 1.89e-07 4.81e-07 3.3e-07 1.04e-07 1.53e-06 2.32e-07 3.93e-07 1.85e-07 4.22e-07 7.92e-07 4.08e-07 6.2e-08 5.58e-08 2.1e-07 3.68e-07 5.23e-08 1.12e-07 6.89e-08 6.08e-08 5.96e-08 4.78e-08 1.06e-06 4.18e-08 2.62e-08 3.34e-08 1.91e-08 7.25e-08 0.0 4.94e-08
ENSG00000198841 KTI12 -91799 1.2e-05 9.76e-06 6.9e-07 4.2e-06 1.66e-06 4.28e-06 9.67e-06 1.12e-06 5.83e-06 4.06e-06 1.07e-05 3.89e-06 1.29e-05 4e-06 9.59e-07 4.5e-06 3.7e-06 3.82e-06 1.65e-06 1.19e-06 2.66e-06 7.69e-06 5.34e-06 1.48e-06 1.24e-05 2.02e-06 4.22e-06 1.82e-06 6.27e-06 6.65e-06 4.82e-06 5.58e-07 5.51e-07 2.15e-06 2.69e-06 9.86e-07 9.78e-07 4.71e-07 8.11e-07 5.79e-07 3.75e-07 1.02e-05 1.19e-06 1.69e-07 3.46e-07 1.13e-06 1.05e-06 3.18e-07 2.55e-07
ENSG00000232027 AL671986.1 569747 1.17e-06 2.17e-07 5.82e-08 3.19e-07 1.03e-07 2.67e-07 3.44e-07 5.75e-08 1.85e-07 1.03e-07 2.38e-07 1.46e-07 3.6e-07 8.26e-08 6.53e-08 8.71e-08 4.35e-08 2.21e-07 8e-08 5.48e-08 1.18e-07 2.06e-07 1.69e-07 3.07e-08 4.54e-07 1.26e-07 1.31e-07 1.04e-07 1.4e-07 2.02e-07 1.76e-07 4.58e-08 3.46e-08 1.23e-07 1.01e-07 2.99e-08 5.62e-08 8.89e-08 6.42e-08 4.24e-08 5.81e-08 3.26e-07 4.83e-08 1.52e-08 4.7e-08 1.01e-08 8.67e-08 1.92e-09 4.94e-08