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Genes within 1Mb (chr1:51941844:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 62907 sc-eQTL 4.01e-01 -0.204 0.242 0.056 B_Activated L2
ENSG00000085832 EPS15 422578 sc-eQTL 1.40e-01 0.339 0.228 0.056 B_Activated L2
ENSG00000116157 GPX7 -660527 sc-eQTL 7.68e-01 -0.0656 0.222 0.056 B_Activated L2
ENSG00000116171 SCP2 -985432 sc-eQTL 7.64e-01 0.063 0.209 0.056 B_Activated L2
ENSG00000117859 OSBPL9 364665 sc-eQTL 5.66e-01 0.137 0.239 0.056 B_Activated L2
ENSG00000117862 TXNDC12 -114327 sc-eQTL 7.84e-01 -0.0625 0.228 0.056 B_Activated L2
ENSG00000121310 ECHDC2 -985368 sc-eQTL 7.28e-01 -0.082 0.235 0.056 B_Activated L2
ENSG00000123080 CDKN2C 981099 sc-eQTL 2.40e-01 -0.205 0.174 0.056 B_Activated L2
ENSG00000123091 RNF11 705571 sc-eQTL 2.81e-01 0.232 0.215 0.056 B_Activated L2
ENSG00000134717 BTF3L4 -114355 sc-eQTL 5.89e-01 -0.13 0.24 0.056 B_Activated L2
ENSG00000134744 TUT4 -611643 sc-eQTL 5.62e-01 0.129 0.223 0.056 B_Activated L2
ENSG00000134748 PRPF38A -462758 sc-eQTL 2.97e-01 0.236 0.225 0.056 B_Activated L2
ENSG00000154222 CC2D1B -424349 sc-eQTL 2.82e-01 -0.237 0.22 0.056 B_Activated L2
ENSG00000162377 COA7 -756503 sc-eQTL 4.83e-02 0.369 0.186 0.056 B_Activated L2
ENSG00000162378 ZYG11B -784609 sc-eQTL 9.17e-01 -0.0241 0.23 0.056 B_Activated L2
ENSG00000182183 SHISAL2A -691324 sc-eQTL 2.70e-02 0.445 0.199 0.056 B_Activated L2
ENSG00000185104 FAF1 981577 sc-eQTL 2.43e-01 0.253 0.216 0.056 B_Activated L2
ENSG00000198841 KTI12 -91966 sc-eQTL 6.29e-01 -0.0935 0.193 0.056 B_Activated L2
ENSG00000078618 NRDC 62907 sc-eQTL 2.15e-01 -0.259 0.208 0.05 CD8_TEM L2
ENSG00000085832 EPS15 422578 sc-eQTL 2.63e-01 -0.213 0.19 0.05 CD8_TEM L2
ENSG00000116157 GPX7 -660527 sc-eQTL 1.31e-01 0.315 0.208 0.05 CD8_TEM L2
ENSG00000116171 SCP2 -985432 sc-eQTL 1.26e-01 -0.271 0.176 0.05 CD8_TEM L2
ENSG00000117859 OSBPL9 364665 sc-eQTL 9.87e-01 -0.00353 0.224 0.05 CD8_TEM L2
ENSG00000117862 TXNDC12 -114327 sc-eQTL 9.92e-01 0.00191 0.202 0.05 CD8_TEM L2
ENSG00000121310 ECHDC2 -985368 sc-eQTL 7.13e-01 -0.0828 0.225 0.05 CD8_TEM L2
ENSG00000123080 CDKN2C 981099 sc-eQTL 6.38e-01 -0.0995 0.211 0.05 CD8_TEM L2
ENSG00000123091 RNF11 705571 sc-eQTL 8.40e-01 -0.0435 0.215 0.05 CD8_TEM L2
ENSG00000134717 BTF3L4 -114355 sc-eQTL 4.12e-01 0.179 0.218 0.05 CD8_TEM L2
ENSG00000134744 TUT4 -611643 sc-eQTL 7.08e-02 0.361 0.199 0.05 CD8_TEM L2
ENSG00000134748 PRPF38A -462758 sc-eQTL 9.52e-02 0.348 0.207 0.05 CD8_TEM L2
ENSG00000154222 CC2D1B -424349 sc-eQTL 4.71e-01 0.15 0.207 0.05 CD8_TEM L2
ENSG00000157077 ZFYVE9 -200250 sc-eQTL 2.59e-01 0.213 0.188 0.05 CD8_TEM L2
ENSG00000162378 ZYG11B -784609 sc-eQTL 8.04e-01 0.0527 0.212 0.05 CD8_TEM L2
ENSG00000182183 SHISAL2A -691324 sc-eQTL 6.69e-01 -0.0859 0.201 0.05 CD8_TEM L2
ENSG00000185104 FAF1 981577 sc-eQTL 5.16e-01 -0.137 0.211 0.05 CD8_TEM L2
ENSG00000198841 KTI12 -91966 sc-eQTL 9.40e-01 0.0157 0.209 0.05 CD8_TEM L2
ENSG00000078618 NRDC 62907 sc-eQTL 9.40e-01 -0.0143 0.189 0.059 PB L2
ENSG00000085832 EPS15 422578 sc-eQTL 4.40e-01 -0.209 0.269 0.059 PB L2
ENSG00000116157 GPX7 -660527 sc-eQTL 7.77e-02 0.368 0.207 0.059 PB L2
ENSG00000116171 SCP2 -985432 sc-eQTL 9.31e-01 -0.0157 0.182 0.059 PB L2
ENSG00000117859 OSBPL9 364665 sc-eQTL 8.95e-02 0.38 0.222 0.059 PB L2
ENSG00000117862 TXNDC12 -114327 sc-eQTL 8.18e-01 0.0384 0.167 0.059 PB L2
ENSG00000121310 ECHDC2 -985368 sc-eQTL 6.80e-01 0.112 0.27 0.059 PB L2
ENSG00000123080 CDKN2C 981099 sc-eQTL 1.28e-01 0.291 0.19 0.059 PB L2
ENSG00000123091 RNF11 705571 sc-eQTL 2.73e-01 0.289 0.262 0.059 PB L2
ENSG00000134717 BTF3L4 -114355 sc-eQTL 1.74e-01 -0.365 0.267 0.059 PB L2
ENSG00000134744 TUT4 -611643 sc-eQTL 3.07e-01 0.253 0.246 0.059 PB L2
ENSG00000134748 PRPF38A -462758 sc-eQTL 9.47e-01 0.0157 0.233 0.059 PB L2
ENSG00000154222 CC2D1B -424349 sc-eQTL 4.32e-02 0.515 0.252 0.059 PB L2
ENSG00000162377 COA7 -756503 sc-eQTL 4.03e-01 -0.2 0.239 0.059 PB L2
ENSG00000162378 ZYG11B -784609 sc-eQTL 2.63e-01 -0.293 0.26 0.059 PB L2
ENSG00000182183 SHISAL2A -691324 sc-eQTL 7.69e-01 0.0641 0.217 0.059 PB L2
ENSG00000185104 FAF1 981577 sc-eQTL 1.27e-01 -0.39 0.254 0.059 PB L2
ENSG00000198841 KTI12 -91966 sc-eQTL 6.14e-02 0.458 0.242 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 62907 eQTL 2.37e-09 -0.0818 0.0136 0.0 0.00192 0.0839
ENSG00000116157 GPX7 -660527 eQTL 1.83e-20 0.401 0.0423 0.0 0.0 0.0839
ENSG00000117859 OSBPL9 364665 eQTL 3.17e-14 0.181 0.0235 0.0 0.0 0.0839
ENSG00000117862 TXNDC12 -114327 eQTL 0.00316 -0.0585 0.0198 0.0 0.0 0.0839
ENSG00000123091 RNF11 705571 eQTL 0.0375 0.0481 0.0231 0.00138 0.0 0.0839
ENSG00000134744 TUT4 -611643 eQTL 1.67e-03 0.0731 0.0232 0.004 0.00346 0.0839
ENSG00000154222 CC2D1B -424349 eQTL 2.1700000000000002e-26 0.321 0.0293 0.0 0.0 0.0839
ENSG00000198841 KTI12 -91972 eQTL 1.47e-05 -0.129 0.0296 0.0 0.0 0.0839
ENSG00000232027 AL671986.1 569574 eQTL 0.0479 -0.124 0.0628 0.00155 0.0 0.0839
ENSG00000236973 GAPDHP51 233707 eQTL 0.0323 0.114 0.0531 0.00135 0.0 0.0839

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 62907 8.9e-06 1.25e-05 1.04e-06 5.54e-06 2.18e-06 4.19e-06 1.04e-05 1.81e-06 8.84e-06 4.38e-06 1.24e-05 5.16e-06 1.58e-05 3.59e-06 1.83e-06 5.6e-06 4.13e-06 6.15e-06 2.64e-06 2.62e-06 4.25e-06 7.98e-06 7.23e-06 2.3e-06 1.31e-05 2.8e-06 4.36e-06 3.16e-06 8.33e-06 7.81e-06 5.54e-06 4.59e-07 6.76e-07 2.78e-06 3.7e-06 2.08e-06 1.35e-06 1.08e-06 1.38e-06 8.74e-07 5.82e-07 1.29e-05 1.32e-06 1.63e-07 7.49e-07 1.21e-06 1.04e-06 6.85e-07 4.23e-07
ENSG00000085831 \N 596728 6.97e-07 3.35e-07 7.16e-08 3.43e-07 1.06e-07 1.57e-07 3.57e-07 7.12e-08 2.53e-07 1.21e-07 3.92e-07 2.04e-07 4.74e-07 8.85e-08 6.2e-08 1.17e-07 6.81e-08 2.87e-07 9.97e-08 7.54e-08 1.34e-07 2.15e-07 2.48e-07 4.34e-08 6.18e-07 2.07e-07 1.48e-07 1.86e-07 1.98e-07 2.01e-07 1.93e-07 4.47e-08 5.2e-08 1.01e-07 2.58e-07 5.05e-08 6.2e-08 6.98e-08 5.84e-08 7.65e-08 4.32e-08 4.02e-07 3.08e-08 5.64e-09 8.45e-08 1.35e-08 9.23e-08 0.0 4.83e-08
ENSG00000116157 GPX7 -660527 4.89e-07 2.4e-07 6.57e-08 2.79e-07 1.01e-07 1.28e-07 2.86e-07 6.12e-08 1.98e-07 9.72e-08 2.47e-07 1.59e-07 3.4e-07 8.66e-08 5.43e-08 9.35e-08 4.25e-08 2.21e-07 7.76e-08 7.05e-08 1.24e-07 1.81e-07 1.89e-07 4.17e-08 4.11e-07 1.82e-07 1.31e-07 1.54e-07 1.44e-07 1.46e-07 1.52e-07 3.99e-08 4.27e-08 1.02e-07 1.33e-07 3.57e-08 5.1e-08 8.57e-08 6.28e-08 7.65e-08 3.64e-08 2.74e-07 4.76e-08 1.52e-08 5.4e-08 8.24e-09 7e-08 2.2e-09 4.91e-08
ENSG00000117859 OSBPL9 364665 1.31e-06 9.28e-07 2.05e-07 9.43e-07 1.54e-07 4.73e-07 1.1e-06 3.34e-07 1.11e-06 3.09e-07 1.41e-06 5.71e-07 1.76e-06 2.57e-07 3.96e-07 5.81e-07 7.66e-07 5.48e-07 4.54e-07 5.57e-07 2.57e-07 8.11e-07 7.79e-07 3.96e-07 2.1e-06 3.17e-07 6.16e-07 6.46e-07 9.39e-07 1.02e-06 5.58e-07 5.45e-08 1.49e-07 3.55e-07 5.63e-07 3.36e-07 3.1e-07 1.15e-07 7.42e-08 4.28e-08 2.11e-07 1.46e-06 6.28e-08 8.04e-08 1.69e-07 9.94e-08 1.43e-07 8.57e-08 6.12e-08
ENSG00000154222 CC2D1B -424349 1.25e-06 9.37e-07 1.22e-07 4.03e-07 1.12e-07 3.58e-07 7e-07 2.06e-07 7.85e-07 2.88e-07 1.11e-06 5.28e-07 1.28e-06 2.14e-07 2.35e-07 3.57e-07 5.34e-07 4.4e-07 3.06e-07 2.68e-07 2.52e-07 5.11e-07 5.49e-07 2.27e-07 1.79e-06 2.38e-07 4.25e-07 4.59e-07 6.33e-07 7.92e-07 4.61e-07 7.12e-08 5.75e-08 1.9e-07 3.6e-07 1.85e-07 1.42e-07 1.06e-07 6.63e-08 8.66e-09 1.36e-07 1.26e-06 4.65e-08 4.16e-08 1.96e-07 4.57e-08 1.29e-07 3.05e-08 6.03e-08
ENSG00000198841 KTI12 -91972 6.16e-06 9.42e-06 7.29e-07 3.98e-06 1.75e-06 2.76e-06 8.57e-06 1.25e-06 4.86e-06 3.02e-06 8.86e-06 3.25e-06 1.13e-05 3.58e-06 1.04e-06 3.99e-06 2.94e-06 3.74e-06 1.52e-06 1.51e-06 2.77e-06 5.63e-06 5.02e-06 1.57e-06 9.65e-06 2.21e-06 2.55e-06 1.71e-06 5.81e-06 6.64e-06 3.95e-06 5.26e-07 5.42e-07 1.96e-06 2.3e-06 1.17e-06 1.06e-06 4.56e-07 8.31e-07 5.32e-07 2.8e-07 8.35e-06 6.61e-07 1.68e-07 4.38e-07 1.13e-06 9.47e-07 4.27e-07 2.87e-07
ENSG00000232027 AL671986.1 569574 7.76e-07 4.24e-07 7.92e-08 3.87e-07 1.07e-07 1.74e-07 4.09e-07 7.65e-08 2.76e-07 1.39e-07 4.64e-07 2.28e-07 5.54e-07 1.01e-07 7.35e-08 1.46e-07 8.53e-08 2.96e-07 1.5e-07 8.41e-08 1.39e-07 2.3e-07 2.67e-07 5.6e-08 7.01e-07 2.32e-07 1.74e-07 2.01e-07 2.31e-07 2.52e-07 2.11e-07 4.85e-08 5.41e-08 1.23e-07 3.05e-07 5.51e-08 6.77e-08 6.11e-08 5.69e-08 7.5e-08 4.67e-08 4.82e-07 3.65e-08 5.89e-09 9.15e-08 1.84e-08 9.1e-08 2.75e-09 4.47e-08