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Genes within 1Mb (chr1:51940016:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 61079 sc-eQTL 4.01e-01 -0.204 0.242 0.056 B_Activated L2
ENSG00000085832 EPS15 420750 sc-eQTL 1.40e-01 0.339 0.228 0.056 B_Activated L2
ENSG00000116157 GPX7 -662355 sc-eQTL 7.68e-01 -0.0656 0.222 0.056 B_Activated L2
ENSG00000116171 SCP2 -987260 sc-eQTL 7.64e-01 0.063 0.209 0.056 B_Activated L2
ENSG00000117859 OSBPL9 362837 sc-eQTL 5.66e-01 0.137 0.239 0.056 B_Activated L2
ENSG00000117862 TXNDC12 -116155 sc-eQTL 7.84e-01 -0.0625 0.228 0.056 B_Activated L2
ENSG00000121310 ECHDC2 -987196 sc-eQTL 7.28e-01 -0.082 0.235 0.056 B_Activated L2
ENSG00000123080 CDKN2C 979271 sc-eQTL 2.40e-01 -0.205 0.174 0.056 B_Activated L2
ENSG00000123091 RNF11 703743 sc-eQTL 2.81e-01 0.232 0.215 0.056 B_Activated L2
ENSG00000134717 BTF3L4 -116183 sc-eQTL 5.89e-01 -0.13 0.24 0.056 B_Activated L2
ENSG00000134744 TUT4 -613471 sc-eQTL 5.62e-01 0.129 0.223 0.056 B_Activated L2
ENSG00000134748 PRPF38A -464586 sc-eQTL 2.97e-01 0.236 0.225 0.056 B_Activated L2
ENSG00000154222 CC2D1B -426177 sc-eQTL 2.82e-01 -0.237 0.22 0.056 B_Activated L2
ENSG00000162377 COA7 -758331 sc-eQTL 4.83e-02 0.369 0.186 0.056 B_Activated L2
ENSG00000162378 ZYG11B -786437 sc-eQTL 9.17e-01 -0.0241 0.23 0.056 B_Activated L2
ENSG00000182183 SHISAL2A -693152 sc-eQTL 2.70e-02 0.445 0.199 0.056 B_Activated L2
ENSG00000185104 FAF1 979749 sc-eQTL 2.43e-01 0.253 0.216 0.056 B_Activated L2
ENSG00000198841 KTI12 -93794 sc-eQTL 6.29e-01 -0.0935 0.193 0.056 B_Activated L2
ENSG00000078618 NRDC 61079 sc-eQTL 2.15e-01 -0.259 0.208 0.05 CD8_TEM L2
ENSG00000085832 EPS15 420750 sc-eQTL 2.63e-01 -0.213 0.19 0.05 CD8_TEM L2
ENSG00000116157 GPX7 -662355 sc-eQTL 1.31e-01 0.315 0.208 0.05 CD8_TEM L2
ENSG00000116171 SCP2 -987260 sc-eQTL 1.26e-01 -0.271 0.176 0.05 CD8_TEM L2
ENSG00000117859 OSBPL9 362837 sc-eQTL 9.87e-01 -0.00353 0.224 0.05 CD8_TEM L2
ENSG00000117862 TXNDC12 -116155 sc-eQTL 9.92e-01 0.00191 0.202 0.05 CD8_TEM L2
ENSG00000121310 ECHDC2 -987196 sc-eQTL 7.13e-01 -0.0828 0.225 0.05 CD8_TEM L2
ENSG00000123080 CDKN2C 979271 sc-eQTL 6.38e-01 -0.0995 0.211 0.05 CD8_TEM L2
ENSG00000123091 RNF11 703743 sc-eQTL 8.40e-01 -0.0435 0.215 0.05 CD8_TEM L2
ENSG00000134717 BTF3L4 -116183 sc-eQTL 4.12e-01 0.179 0.218 0.05 CD8_TEM L2
ENSG00000134744 TUT4 -613471 sc-eQTL 7.08e-02 0.361 0.199 0.05 CD8_TEM L2
ENSG00000134748 PRPF38A -464586 sc-eQTL 9.52e-02 0.348 0.207 0.05 CD8_TEM L2
ENSG00000154222 CC2D1B -426177 sc-eQTL 4.71e-01 0.15 0.207 0.05 CD8_TEM L2
ENSG00000157077 ZFYVE9 -202078 sc-eQTL 2.59e-01 0.213 0.188 0.05 CD8_TEM L2
ENSG00000162378 ZYG11B -786437 sc-eQTL 8.04e-01 0.0527 0.212 0.05 CD8_TEM L2
ENSG00000182183 SHISAL2A -693152 sc-eQTL 6.69e-01 -0.0859 0.201 0.05 CD8_TEM L2
ENSG00000185104 FAF1 979749 sc-eQTL 5.16e-01 -0.137 0.211 0.05 CD8_TEM L2
ENSG00000198841 KTI12 -93794 sc-eQTL 9.40e-01 0.0157 0.209 0.05 CD8_TEM L2
ENSG00000078618 NRDC 61079 sc-eQTL 9.40e-01 -0.0143 0.189 0.059 PB L2
ENSG00000085832 EPS15 420750 sc-eQTL 4.40e-01 -0.209 0.269 0.059 PB L2
ENSG00000116157 GPX7 -662355 sc-eQTL 7.77e-02 0.368 0.207 0.059 PB L2
ENSG00000116171 SCP2 -987260 sc-eQTL 9.31e-01 -0.0157 0.182 0.059 PB L2
ENSG00000117859 OSBPL9 362837 sc-eQTL 8.95e-02 0.38 0.222 0.059 PB L2
ENSG00000117862 TXNDC12 -116155 sc-eQTL 8.18e-01 0.0384 0.167 0.059 PB L2
ENSG00000121310 ECHDC2 -987196 sc-eQTL 6.80e-01 0.112 0.27 0.059 PB L2
ENSG00000123080 CDKN2C 979271 sc-eQTL 1.28e-01 0.291 0.19 0.059 PB L2
ENSG00000123091 RNF11 703743 sc-eQTL 2.73e-01 0.289 0.262 0.059 PB L2
ENSG00000134717 BTF3L4 -116183 sc-eQTL 1.74e-01 -0.365 0.267 0.059 PB L2
ENSG00000134744 TUT4 -613471 sc-eQTL 3.07e-01 0.253 0.246 0.059 PB L2
ENSG00000134748 PRPF38A -464586 sc-eQTL 9.47e-01 0.0157 0.233 0.059 PB L2
ENSG00000154222 CC2D1B -426177 sc-eQTL 4.32e-02 0.515 0.252 0.059 PB L2
ENSG00000162377 COA7 -758331 sc-eQTL 4.03e-01 -0.2 0.239 0.059 PB L2
ENSG00000162378 ZYG11B -786437 sc-eQTL 2.63e-01 -0.293 0.26 0.059 PB L2
ENSG00000182183 SHISAL2A -693152 sc-eQTL 7.69e-01 0.0641 0.217 0.059 PB L2
ENSG00000185104 FAF1 979749 sc-eQTL 1.27e-01 -0.39 0.254 0.059 PB L2
ENSG00000198841 KTI12 -93794 sc-eQTL 6.14e-02 0.458 0.242 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 61079 eQTL 2.06e-09 -0.0819 0.0135 0.0 0.00223 0.0849
ENSG00000116157 GPX7 -662355 eQTL 3.5e-20 0.397 0.0422 0.0 0.0 0.0849
ENSG00000117859 OSBPL9 362837 eQTL 2.25e-14 0.181 0.0234 0.0 0.0 0.0849
ENSG00000117862 TXNDC12 -116155 eQTL 0.00317 -0.0583 0.0197 0.0 0.0 0.0849
ENSG00000123091 RNF11 703743 eQTL 0.0344 0.0487 0.023 0.00146 0.0 0.0849
ENSG00000134744 TUT4 -613471 eQTL 2.05e-03 0.0715 0.0231 0.00362 0.00291 0.0849
ENSG00000154222 CC2D1B -426177 eQTL 4.24e-26 0.318 0.0292 0.0 0.0 0.0849
ENSG00000198841 KTI12 -93800 eQTL 1.38e-05 -0.129 0.0295 0.0 0.0 0.0849
ENSG00000232027 AL671986.1 567746 eQTL 0.0428 -0.127 0.0626 0.00162 0.0 0.0849
ENSG00000236973 GAPDHP51 231879 eQTL 0.0331 0.113 0.0529 0.00134 0.0 0.0849

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 61079 7.77e-06 1.18e-05 9.94e-07 5.17e-06 1.76e-06 3.71e-06 9.87e-06 1.51e-06 7.77e-06 4.43e-06 1.1e-05 4.92e-06 1.45e-05 3.84e-06 2.11e-06 5.39e-06 4.01e-06 5e-06 2.58e-06 2.59e-06 3.53e-06 8.06e-06 6.98e-06 2.21e-06 1.29e-05 2.45e-06 4.15e-06 2.81e-06 7.85e-06 7.97e-06 4.92e-06 4.88e-07 6.91e-07 2.62e-06 3.64e-06 2.04e-06 1.26e-06 1.03e-06 1.57e-06 8.89e-07 5.44e-07 1.28e-05 8.89e-07 1.53e-07 5.92e-07 9.57e-07 1.16e-06 6.82e-07 5.99e-07
ENSG00000116157 GPX7 -662355 2.61e-07 1.25e-07 3.56e-08 1.86e-07 8.83e-08 9.71e-08 1.42e-07 5.33e-08 1.4e-07 4.4e-08 1.62e-07 8.14e-08 1.41e-07 6.56e-08 5.99e-08 7.26e-08 3.94e-08 1.18e-07 5.36e-08 4.45e-08 1.04e-07 1.26e-07 1.34e-07 3.68e-08 1.32e-07 1.14e-07 1.12e-07 9.32e-08 1.05e-07 1.02e-07 9.91e-08 3.68e-08 3.56e-08 8.65e-08 8.98e-08 3.94e-08 5.11e-08 9.62e-08 7.47e-08 3.77e-08 4.51e-08 1.36e-07 4.1e-08 1.22e-08 6.92e-08 1.67e-08 1.22e-07 3.8e-09 5e-08
ENSG00000117859 OSBPL9 362837 4.21e-07 5.67e-07 7.16e-08 3.77e-07 1.03e-07 1.26e-07 4.05e-07 7.52e-08 2.66e-07 1.39e-07 4.3e-07 2.22e-07 6e-07 1.1e-07 1.45e-07 1.26e-07 1.62e-07 2.96e-07 1.5e-07 8.25e-08 1.59e-07 2.45e-07 2.81e-07 1.03e-07 5.15e-07 2e-07 1.39e-07 1.69e-07 2.19e-07 4.72e-07 2.11e-07 7.4e-08 6.08e-08 1.02e-07 1.76e-07 5.7e-08 9.77e-08 5.8e-08 4.78e-08 7.28e-08 4.78e-08 5.44e-07 3.13e-08 1.98e-08 4e-08 8.24e-09 8.93e-08 3.04e-09 5.65e-08
ENSG00000154222 CC2D1B -426177 3.02e-07 2.56e-07 6.26e-08 2.57e-07 9.94e-08 8.89e-08 2.5e-07 5.68e-08 1.86e-07 9.72e-08 2.07e-07 1.46e-07 3.18e-07 8.54e-08 6.93e-08 9.01e-08 5.73e-08 2.04e-07 7.11e-08 6.58e-08 1.24e-07 1.76e-07 1.86e-07 3.27e-08 2.74e-07 1.43e-07 1.19e-07 1.26e-07 1.34e-07 2.01e-07 1.39e-07 5.4e-08 4.86e-08 9.58e-08 5.41e-08 3.5e-08 5.76e-08 7.49e-08 6.21e-08 6.79e-08 5.53e-08 2.74e-07 5.22e-08 2.07e-08 2.64e-08 1.01e-08 8.74e-08 0.0 4.74e-08
ENSG00000198841 KTI12 -93800 4.6e-06 7.85e-06 9.13e-07 3.5e-06 1.27e-06 1.64e-06 6.12e-06 9.99e-07 5.03e-06 2.4e-06 6.77e-06 3.3e-06 9.48e-06 2.13e-06 1.21e-06 3.38e-06 2.07e-06 3.81e-06 1.5e-06 1.15e-06 2.98e-06 4.83e-06 4.6e-06 1.36e-06 8.49e-06 1.72e-06 2.55e-06 1.85e-06 4.47e-06 5.83e-06 2.62e-06 6.26e-07 5.51e-07 1.73e-06 2.05e-06 9.53e-07 9.64e-07 4.42e-07 8.26e-07 4.55e-07 2.4e-07 8.42e-06 4.01e-07 1.86e-07 3.13e-07 5.88e-07 8e-07 2.87e-07 3.21e-07
ENSG00000232027 AL671986.1 567746 2.67e-07 1.36e-07 3.88e-08 2.05e-07 9.16e-08 1e-07 1.53e-07 5.37e-08 1.45e-07 4.94e-08 1.55e-07 8.68e-08 1.53e-07 7.37e-08 6.12e-08 7.3e-08 4.09e-08 1.27e-07 5.97e-08 4.21e-08 1.19e-07 1.27e-07 1.45e-07 2.64e-08 1.55e-07 1.14e-07 1.06e-07 9.61e-08 1.16e-07 1e-07 1.02e-07 3.39e-08 3.73e-08 8.34e-08 7.36e-08 3.04e-08 5.61e-08 9.36e-08 6.54e-08 3.92e-08 4.37e-08 1.48e-07 4.52e-08 1.44e-08 5.43e-08 1.83e-08 1.19e-07 1.89e-09 4.85e-08