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Genes within 1Mb (chr6:138061411:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000024862 CCDC28A -712098 sc-eQTL 9.70e-01 -0.00878 0.229 0.054 B_Activated L2
ENSG00000027697 IFNGR1 841962 sc-eQTL 3.52e-03 -0.592 0.2 0.054 B_Activated L2
ENSG00000051620 HEBP2 -342120 sc-eQTL 1.65e-01 0.279 0.2 0.054 B_Activated L2
ENSG00000112378 PERP -46008 sc-eQTL 6.01e-01 -0.0546 0.104 0.054 B_Activated L2
ENSG00000118503 TNFAIP3 194197 sc-eQTL 4.95e-01 -0.138 0.202 0.054 B_Activated L2
ENSG00000135597 REPS1 -926850 sc-eQTL 6.17e-01 0.114 0.229 0.054 B_Activated L2
ENSG00000146386 ABRACL -967334 sc-eQTL 4.66e-02 0.41 0.205 0.054 B_Activated L2
ENSG00000237499 WAKMAR2 193178 sc-eQTL 7.23e-01 -0.0627 0.177 0.054 B_Activated L2
ENSG00000024862 CCDC28A -712098 sc-eQTL 4.46e-01 -0.151 0.198 0.05 CD4_CTL L2
ENSG00000027697 IFNGR1 841962 sc-eQTL 7.73e-01 -0.0536 0.186 0.05 CD4_CTL L2
ENSG00000051620 HEBP2 -342120 sc-eQTL 6.77e-01 0.0713 0.171 0.05 CD4_CTL L2
ENSG00000112378 PERP -46008 sc-eQTL 8.35e-01 -0.0434 0.209 0.05 CD4_CTL L2
ENSG00000118503 TNFAIP3 194197 sc-eQTL 6.31e-01 -0.0585 0.122 0.05 CD4_CTL L2
ENSG00000135597 REPS1 -926850 sc-eQTL 9.11e-01 0.0217 0.194 0.05 CD4_CTL L2
ENSG00000146386 ABRACL -967334 sc-eQTL 4.92e-01 -0.122 0.177 0.05 CD4_CTL L2
ENSG00000237499 WAKMAR2 193178 sc-eQTL 3.76e-01 0.168 0.189 0.05 CD4_CTL L2
ENSG00000024862 CCDC28A -712098 sc-eQTL 4.72e-01 -0.154 0.213 0.05 CD8_TEM L2
ENSG00000027697 IFNGR1 841962 sc-eQTL 5.26e-01 -0.117 0.185 0.05 CD8_TEM L2
ENSG00000051620 HEBP2 -342120 sc-eQTL 9.20e-01 -0.0196 0.194 0.05 CD8_TEM L2
ENSG00000112378 PERP -46008 sc-eQTL 9.30e-01 -0.0195 0.222 0.05 CD8_TEM L2
ENSG00000118503 TNFAIP3 194197 sc-eQTL 8.49e-01 -0.026 0.137 0.05 CD8_TEM L2
ENSG00000135597 REPS1 -926850 sc-eQTL 9.19e-01 -0.0211 0.208 0.05 CD8_TEM L2
ENSG00000146386 ABRACL -967334 sc-eQTL 6.11e-01 0.0816 0.16 0.05 CD8_TEM L2
ENSG00000237499 WAKMAR2 193178 sc-eQTL 2.71e-01 -0.223 0.202 0.05 CD8_TEM L2
ENSG00000024862 CCDC28A -712098 sc-eQTL 4.35e-01 0.16 0.205 0.051 NK_CD56bright L2
ENSG00000027697 IFNGR1 841962 sc-eQTL 6.28e-01 0.0776 0.16 0.051 NK_CD56bright L2
ENSG00000051620 HEBP2 -342120 sc-eQTL 8.35e-02 0.302 0.173 0.051 NK_CD56bright L2
ENSG00000112378 PERP -46008 sc-eQTL 5.76e-01 0.105 0.187 0.051 NK_CD56bright L2
ENSG00000118503 TNFAIP3 194197 sc-eQTL 2.91e-01 -0.126 0.119 0.051 NK_CD56bright L2
ENSG00000135597 REPS1 -926850 sc-eQTL 3.97e-01 -0.147 0.173 0.051 NK_CD56bright L2
ENSG00000146386 ABRACL -967334 sc-eQTL 9.92e-01 0.00154 0.16 0.051 NK_CD56bright L2
ENSG00000237499 WAKMAR2 193178 sc-eQTL 2.72e-01 -0.209 0.189 0.051 NK_CD56bright L2
ENSG00000024862 CCDC28A -712098 sc-eQTL 2.18e-01 -0.27 0.218 0.05 NK_HLA L2
ENSG00000027697 IFNGR1 841962 sc-eQTL 1.84e-01 -0.214 0.16 0.05 NK_HLA L2
ENSG00000051620 HEBP2 -342120 sc-eQTL 4.23e-01 0.15 0.186 0.05 NK_HLA L2
ENSG00000112378 PERP -46008 sc-eQTL 4.34e-01 0.13 0.166 0.05 NK_HLA L2
ENSG00000118503 TNFAIP3 194197 sc-eQTL 1.12e-01 0.202 0.127 0.05 NK_HLA L2
ENSG00000135597 REPS1 -926850 sc-eQTL 9.44e-01 -0.0142 0.202 0.05 NK_HLA L2
ENSG00000146386 ABRACL -967334 sc-eQTL 3.25e-01 -0.164 0.166 0.05 NK_HLA L2
ENSG00000237499 WAKMAR2 193178 sc-eQTL 4.45e-01 -0.157 0.205 0.05 NK_HLA L2
ENSG00000024862 CCDC28A -712098 sc-eQTL 5.73e-01 -0.121 0.214 0.05 Pro_T L2
ENSG00000027697 IFNGR1 841962 sc-eQTL 8.04e-01 0.0406 0.164 0.05 Pro_T L2
ENSG00000051620 HEBP2 -342120 sc-eQTL 5.45e-01 -0.104 0.171 0.05 Pro_T L2
ENSG00000112378 PERP -46008 sc-eQTL 1.45e-01 -0.23 0.157 0.05 Pro_T L2
ENSG00000118503 TNFAIP3 194197 sc-eQTL 8.29e-01 0.0215 0.0997 0.05 Pro_T L2
ENSG00000135597 REPS1 -926850 sc-eQTL 3.99e-01 -0.168 0.199 0.05 Pro_T L2
ENSG00000146386 ABRACL -967334 sc-eQTL 6.32e-01 -0.0615 0.128 0.05 Pro_T L2
ENSG00000237499 WAKMAR2 193178 sc-eQTL 5.21e-01 0.124 0.193 0.05 Pro_T L2
ENSG00000024862 CCDC28A -712098 sc-eQTL 2.70e-01 0.227 0.205 0.054 cDC L2
ENSG00000027697 IFNGR1 841962 sc-eQTL 2.44e-01 -0.195 0.167 0.054 cDC L2
ENSG00000051620 HEBP2 -342120 sc-eQTL 5.27e-01 -0.0933 0.147 0.054 cDC L2
ENSG00000118503 TNFAIP3 194197 sc-eQTL 5.66e-01 0.0948 0.165 0.054 cDC L2
ENSG00000135540 NHSL1 -631160 sc-eQTL 7.41e-01 0.0633 0.191 0.054 cDC L2
ENSG00000135597 REPS1 -926850 sc-eQTL 4.17e-01 -0.179 0.22 0.054 cDC L2
ENSG00000146386 ABRACL -967334 sc-eQTL 9.79e-02 0.298 0.179 0.054 cDC L2
ENSG00000225177 AL590617.2 -631137 sc-eQTL 9.44e-01 0.0149 0.211 0.054 cDC L2
ENSG00000237499 WAKMAR2 193178 sc-eQTL 6.07e-01 -0.111 0.215 0.054 cDC L2
ENSG00000024862 CCDC28A -712098 sc-eQTL 7.84e-02 0.338 0.191 0.052 ncMono L2
ENSG00000027697 IFNGR1 841962 sc-eQTL 7.81e-01 0.0456 0.164 0.052 ncMono L2
ENSG00000051620 HEBP2 -342120 sc-eQTL 6.35e-01 -0.0546 0.115 0.052 ncMono L2
ENSG00000118503 TNFAIP3 194197 sc-eQTL 7.23e-01 -0.0515 0.145 0.052 ncMono L2
ENSG00000135540 NHSL1 -631160 sc-eQTL 5.34e-01 -0.115 0.185 0.052 ncMono L2
ENSG00000135597 REPS1 -926850 sc-eQTL 2.82e-01 -0.15 0.139 0.052 ncMono L2
ENSG00000146386 ABRACL -967334 sc-eQTL 3.73e-01 0.15 0.168 0.052 ncMono L2
ENSG00000225177 AL590617.2 -631137 sc-eQTL 9.10e-01 -0.0232 0.205 0.052 ncMono L2
ENSG00000237499 WAKMAR2 193178 sc-eQTL 9.40e-01 -0.0136 0.181 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000146386 ABRACL -967334 eQTL 0.0163 0.109 0.0454 0.0 0.0 0.0623
ENSG00000279968 GVQW2 -712241 eQTL 0.017 0.21 0.0877 0.00245 0.0 0.0623

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000027697 \N 841962 2.61e-07 1.16e-07 3.59e-08 1.84e-07 8.92e-08 9.57e-08 1.38e-07 5.49e-08 1.41e-07 4.4e-08 1.56e-07 7.75e-08 1.3e-07 6.21e-08 5.53e-08 7.5e-08 4.48e-08 1.14e-07 5.39e-08 4.45e-08 1.04e-07 1.27e-07 1.32e-07 4.16e-08 1.33e-07 1.19e-07 1.12e-07 9.32e-08 1.05e-07 1.09e-07 9.58e-08 3.7e-08 3.28e-08 8.82e-08 8.93e-08 3.76e-08 5.11e-08 9.56e-08 7.47e-08 3.71e-08 5.28e-08 1.35e-07 4.12e-08 1.43e-08 5.7e-08 1.69e-08 1.26e-07 3.95e-09 4.88e-08