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Genes within 1Mb (chr6:138043685:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000024862 CCDC28A -729824 sc-eQTL 9.70e-01 -0.00878 0.229 0.054 B_Activated L2
ENSG00000027697 IFNGR1 824236 sc-eQTL 3.52e-03 -0.592 0.2 0.054 B_Activated L2
ENSG00000051620 HEBP2 -359846 sc-eQTL 1.65e-01 0.279 0.2 0.054 B_Activated L2
ENSG00000112378 PERP -63734 sc-eQTL 6.01e-01 -0.0546 0.104 0.054 B_Activated L2
ENSG00000118503 TNFAIP3 176471 sc-eQTL 4.95e-01 -0.138 0.202 0.054 B_Activated L2
ENSG00000135597 REPS1 -944576 sc-eQTL 6.17e-01 0.114 0.229 0.054 B_Activated L2
ENSG00000146386 ABRACL -985060 sc-eQTL 4.66e-02 0.41 0.205 0.054 B_Activated L2
ENSG00000237499 WAKMAR2 175452 sc-eQTL 7.23e-01 -0.0627 0.177 0.054 B_Activated L2
ENSG00000024862 CCDC28A -729824 sc-eQTL 4.46e-01 -0.151 0.198 0.05 CD4_CTL L2
ENSG00000027697 IFNGR1 824236 sc-eQTL 7.73e-01 -0.0536 0.186 0.05 CD4_CTL L2
ENSG00000051620 HEBP2 -359846 sc-eQTL 6.77e-01 0.0713 0.171 0.05 CD4_CTL L2
ENSG00000112378 PERP -63734 sc-eQTL 8.35e-01 -0.0434 0.209 0.05 CD4_CTL L2
ENSG00000118503 TNFAIP3 176471 sc-eQTL 6.31e-01 -0.0585 0.122 0.05 CD4_CTL L2
ENSG00000135597 REPS1 -944576 sc-eQTL 9.11e-01 0.0217 0.194 0.05 CD4_CTL L2
ENSG00000146386 ABRACL -985060 sc-eQTL 4.92e-01 -0.122 0.177 0.05 CD4_CTL L2
ENSG00000237499 WAKMAR2 175452 sc-eQTL 3.76e-01 0.168 0.189 0.05 CD4_CTL L2
ENSG00000024862 CCDC28A -729824 sc-eQTL 4.72e-01 -0.154 0.213 0.05 CD8_TEM L2
ENSG00000027697 IFNGR1 824236 sc-eQTL 5.26e-01 -0.117 0.185 0.05 CD8_TEM L2
ENSG00000051620 HEBP2 -359846 sc-eQTL 9.20e-01 -0.0196 0.194 0.05 CD8_TEM L2
ENSG00000112378 PERP -63734 sc-eQTL 9.30e-01 -0.0195 0.222 0.05 CD8_TEM L2
ENSG00000118503 TNFAIP3 176471 sc-eQTL 8.49e-01 -0.026 0.137 0.05 CD8_TEM L2
ENSG00000135597 REPS1 -944576 sc-eQTL 9.19e-01 -0.0211 0.208 0.05 CD8_TEM L2
ENSG00000146386 ABRACL -985060 sc-eQTL 6.11e-01 0.0816 0.16 0.05 CD8_TEM L2
ENSG00000237499 WAKMAR2 175452 sc-eQTL 2.71e-01 -0.223 0.202 0.05 CD8_TEM L2
ENSG00000024862 CCDC28A -729824 sc-eQTL 4.35e-01 0.16 0.205 0.051 NK_CD56bright L2
ENSG00000027697 IFNGR1 824236 sc-eQTL 6.28e-01 0.0776 0.16 0.051 NK_CD56bright L2
ENSG00000051620 HEBP2 -359846 sc-eQTL 8.35e-02 0.302 0.173 0.051 NK_CD56bright L2
ENSG00000112378 PERP -63734 sc-eQTL 5.76e-01 0.105 0.187 0.051 NK_CD56bright L2
ENSG00000118503 TNFAIP3 176471 sc-eQTL 2.91e-01 -0.126 0.119 0.051 NK_CD56bright L2
ENSG00000135597 REPS1 -944576 sc-eQTL 3.97e-01 -0.147 0.173 0.051 NK_CD56bright L2
ENSG00000146386 ABRACL -985060 sc-eQTL 9.92e-01 0.00154 0.16 0.051 NK_CD56bright L2
ENSG00000237499 WAKMAR2 175452 sc-eQTL 2.72e-01 -0.209 0.189 0.051 NK_CD56bright L2
ENSG00000024862 CCDC28A -729824 sc-eQTL 2.18e-01 -0.27 0.218 0.05 NK_HLA L2
ENSG00000027697 IFNGR1 824236 sc-eQTL 1.84e-01 -0.214 0.16 0.05 NK_HLA L2
ENSG00000051620 HEBP2 -359846 sc-eQTL 4.23e-01 0.15 0.186 0.05 NK_HLA L2
ENSG00000112378 PERP -63734 sc-eQTL 4.34e-01 0.13 0.166 0.05 NK_HLA L2
ENSG00000118503 TNFAIP3 176471 sc-eQTL 1.12e-01 0.202 0.127 0.05 NK_HLA L2
ENSG00000135597 REPS1 -944576 sc-eQTL 9.44e-01 -0.0142 0.202 0.05 NK_HLA L2
ENSG00000146386 ABRACL -985060 sc-eQTL 3.25e-01 -0.164 0.166 0.05 NK_HLA L2
ENSG00000237499 WAKMAR2 175452 sc-eQTL 4.45e-01 -0.157 0.205 0.05 NK_HLA L2
ENSG00000024862 CCDC28A -729824 sc-eQTL 5.73e-01 -0.121 0.214 0.05 Pro_T L2
ENSG00000027697 IFNGR1 824236 sc-eQTL 8.04e-01 0.0406 0.164 0.05 Pro_T L2
ENSG00000051620 HEBP2 -359846 sc-eQTL 5.45e-01 -0.104 0.171 0.05 Pro_T L2
ENSG00000112378 PERP -63734 sc-eQTL 1.45e-01 -0.23 0.157 0.05 Pro_T L2
ENSG00000118503 TNFAIP3 176471 sc-eQTL 8.29e-01 0.0215 0.0997 0.05 Pro_T L2
ENSG00000135597 REPS1 -944576 sc-eQTL 3.99e-01 -0.168 0.199 0.05 Pro_T L2
ENSG00000146386 ABRACL -985060 sc-eQTL 6.32e-01 -0.0615 0.128 0.05 Pro_T L2
ENSG00000237499 WAKMAR2 175452 sc-eQTL 5.21e-01 0.124 0.193 0.05 Pro_T L2
ENSG00000024862 CCDC28A -729824 sc-eQTL 2.70e-01 0.227 0.205 0.054 cDC L2
ENSG00000027697 IFNGR1 824236 sc-eQTL 2.44e-01 -0.195 0.167 0.054 cDC L2
ENSG00000051620 HEBP2 -359846 sc-eQTL 5.27e-01 -0.0933 0.147 0.054 cDC L2
ENSG00000118503 TNFAIP3 176471 sc-eQTL 5.66e-01 0.0948 0.165 0.054 cDC L2
ENSG00000135540 NHSL1 -648886 sc-eQTL 7.41e-01 0.0633 0.191 0.054 cDC L2
ENSG00000135597 REPS1 -944576 sc-eQTL 4.17e-01 -0.179 0.22 0.054 cDC L2
ENSG00000146386 ABRACL -985060 sc-eQTL 9.79e-02 0.298 0.179 0.054 cDC L2
ENSG00000225177 AL590617.2 -648863 sc-eQTL 9.44e-01 0.0149 0.211 0.054 cDC L2
ENSG00000237499 WAKMAR2 175452 sc-eQTL 6.07e-01 -0.111 0.215 0.054 cDC L2
ENSG00000024862 CCDC28A -729824 sc-eQTL 7.84e-02 0.338 0.191 0.052 ncMono L2
ENSG00000027697 IFNGR1 824236 sc-eQTL 7.81e-01 0.0456 0.164 0.052 ncMono L2
ENSG00000051620 HEBP2 -359846 sc-eQTL 6.35e-01 -0.0546 0.115 0.052 ncMono L2
ENSG00000118503 TNFAIP3 176471 sc-eQTL 7.23e-01 -0.0515 0.145 0.052 ncMono L2
ENSG00000135540 NHSL1 -648886 sc-eQTL 5.34e-01 -0.115 0.185 0.052 ncMono L2
ENSG00000135597 REPS1 -944576 sc-eQTL 2.82e-01 -0.15 0.139 0.052 ncMono L2
ENSG00000146386 ABRACL -985060 sc-eQTL 3.73e-01 0.15 0.168 0.052 ncMono L2
ENSG00000225177 AL590617.2 -648863 sc-eQTL 9.10e-01 -0.0232 0.205 0.052 ncMono L2
ENSG00000237499 WAKMAR2 175452 sc-eQTL 9.40e-01 -0.0136 0.181 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000146386 ABRACL -985060 eQTL 0.0287 0.0997 0.0455 0.0 0.0 0.0623
ENSG00000279968 GVQW2 -729967 eQTL 0.0145 0.215 0.0878 0.00285 0.0 0.0623

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000027697 \N 824236 2.74e-07 1.27e-07 4.69e-08 2.05e-07 9.21e-08 9.8e-08 1.61e-07 5.4e-08 1.45e-07 5.42e-08 1.63e-07 8.59e-08 1.53e-07 7.13e-08 6.04e-08 7.36e-08 4.17e-08 1.27e-07 6.07e-08 4.1e-08 1.19e-07 1.24e-07 1.44e-07 3.03e-08 1.55e-07 1.14e-07 1.07e-07 9.74e-08 1.16e-07 1.07e-07 1.02e-07 3.65e-08 3.16e-08 8.25e-08 5.99e-08 3.65e-08 5.45e-08 9.23e-08 6.71e-08 4.47e-08 5.14e-08 1.46e-07 4.89e-08 7.35e-09 4.25e-08 1.86e-08 1.19e-07 3.86e-09 4.94e-08