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Genes within 1Mb (chr6:136943670:AG:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000027697 IFNGR1 -275779 sc-eQTL 7.38e-02 -0.327 0.182 0.05 CD4_CTL L2
ENSG00000029363 BCLAF1 653819 sc-eQTL 7.96e-01 -0.0422 0.163 0.05 CD4_CTL L2
ENSG00000112357 PEX7 121106 sc-eQTL 5.18e-01 -0.131 0.203 0.05 CD4_CTL L2
ENSG00000118503 TNFAIP3 -923544 sc-eQTL 2.00e-01 0.154 0.12 0.05 CD4_CTL L2
ENSG00000197442 MAP3K5 151193 sc-eQTL 2.38e-01 0.226 0.191 0.05 CD4_CTL L2
ENSG00000237499 WAKMAR2 -924563 sc-eQTL 4.98e-01 0.127 0.187 0.05 CD4_CTL L2
ENSG00000027697 IFNGR1 -275779 sc-eQTL 7.89e-01 0.0504 0.188 0.05 CD8_TEM L2
ENSG00000029363 BCLAF1 653819 sc-eQTL 4.29e-01 0.141 0.177 0.05 CD8_TEM L2
ENSG00000112357 PEX7 121106 sc-eQTL 2.64e-02 0.479 0.214 0.05 CD8_TEM L2
ENSG00000118503 TNFAIP3 -923544 sc-eQTL 2.02e-01 0.177 0.138 0.05 CD8_TEM L2
ENSG00000197442 MAP3K5 151193 sc-eQTL 2.93e-01 -0.226 0.214 0.05 CD8_TEM L2
ENSG00000237499 WAKMAR2 -924563 sc-eQTL 3.87e-01 -0.178 0.206 0.05 CD8_TEM L2
ENSG00000027697 IFNGR1 -275779 sc-eQTL 8.08e-01 0.062 0.255 0.056 PB L2
ENSG00000029363 BCLAF1 653819 sc-eQTL 2.89e-01 0.233 0.219 0.056 PB L2
ENSG00000112357 PEX7 121106 sc-eQTL 4.03e-01 0.219 0.261 0.056 PB L2
ENSG00000118503 TNFAIP3 -923544 sc-eQTL 8.44e-01 0.0391 0.198 0.056 PB L2
ENSG00000197442 MAP3K5 151193 sc-eQTL 6.72e-01 0.0955 0.225 0.056 PB L2
ENSG00000237499 WAKMAR2 -924563 sc-eQTL 5.40e-01 -0.146 0.237 0.056 PB L2
ENSG00000027697 IFNGR1 -275779 sc-eQTL 8.69e-02 0.287 0.167 0.05 Pro_T L2
ENSG00000029363 BCLAF1 653819 sc-eQTL 1.90e-03 -0.536 0.17 0.05 Pro_T L2
ENSG00000112357 PEX7 121106 sc-eQTL 2.07e-01 0.258 0.203 0.05 Pro_T L2
ENSG00000118503 TNFAIP3 -923544 sc-eQTL 7.08e-01 -0.0383 0.102 0.05 Pro_T L2
ENSG00000146410 MTFR2 693335 sc-eQTL 1.74e-01 0.193 0.141 0.05 Pro_T L2
ENSG00000197442 MAP3K5 151193 sc-eQTL 9.26e-01 0.0185 0.198 0.05 Pro_T L2
ENSG00000237499 WAKMAR2 -924563 sc-eQTL 8.67e-01 0.0334 0.199 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000182747 SLC35D3 21369 eQTL 0.012 0.176 0.0699 0.0 0.0 0.0496

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000118503 \N -923544 2.67e-07 1.06e-07 3.34e-08 1.78e-07 1.02e-07 9.71e-08 1.99e-07 5.24e-08 1.41e-07 4.23e-08 1.6e-07 7.58e-08 1.26e-07 6.07e-08 4.48e-08 7.87e-08 5.15e-08 1.07e-07 5.22e-08 2.85e-08 1.06e-07 1.3e-07 1.45e-07 5.01e-08 1.29e-07 1.09e-07 1.11e-07 8.49e-08 1.09e-07 1.12e-07 9.75e-08 3.29e-08 2.75e-08 8.25e-08 9.02e-08 4.26e-08 4.96e-08 8.78e-08 8.3e-08 3.8e-08 3.58e-08 1.31e-07 4.34e-08 1.58e-08 1.15e-07 1.78e-08 1.45e-07 4.96e-09 4.72e-08