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Genes within 1Mb (chr6:136942480:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000027697 IFNGR1 -276969 sc-eQTL 7.38e-02 -0.327 0.182 0.05 CD4_CTL L2
ENSG00000029363 BCLAF1 652629 sc-eQTL 7.96e-01 -0.0422 0.163 0.05 CD4_CTL L2
ENSG00000112357 PEX7 119916 sc-eQTL 5.18e-01 -0.131 0.203 0.05 CD4_CTL L2
ENSG00000118503 TNFAIP3 -924734 sc-eQTL 2.00e-01 0.154 0.12 0.05 CD4_CTL L2
ENSG00000197442 MAP3K5 150003 sc-eQTL 2.38e-01 0.226 0.191 0.05 CD4_CTL L2
ENSG00000237499 WAKMAR2 -925753 sc-eQTL 4.98e-01 0.127 0.187 0.05 CD4_CTL L2
ENSG00000027697 IFNGR1 -276969 sc-eQTL 7.89e-01 0.0504 0.188 0.05 CD8_TEM L2
ENSG00000029363 BCLAF1 652629 sc-eQTL 4.29e-01 0.141 0.177 0.05 CD8_TEM L2
ENSG00000112357 PEX7 119916 sc-eQTL 2.64e-02 0.479 0.214 0.05 CD8_TEM L2
ENSG00000118503 TNFAIP3 -924734 sc-eQTL 2.02e-01 0.177 0.138 0.05 CD8_TEM L2
ENSG00000197442 MAP3K5 150003 sc-eQTL 2.93e-01 -0.226 0.214 0.05 CD8_TEM L2
ENSG00000237499 WAKMAR2 -925753 sc-eQTL 3.87e-01 -0.178 0.206 0.05 CD8_TEM L2
ENSG00000027697 IFNGR1 -276969 sc-eQTL 8.08e-01 0.062 0.255 0.056 PB L2
ENSG00000029363 BCLAF1 652629 sc-eQTL 2.89e-01 0.233 0.219 0.056 PB L2
ENSG00000112357 PEX7 119916 sc-eQTL 4.03e-01 0.219 0.261 0.056 PB L2
ENSG00000118503 TNFAIP3 -924734 sc-eQTL 8.44e-01 0.0391 0.198 0.056 PB L2
ENSG00000197442 MAP3K5 150003 sc-eQTL 6.72e-01 0.0955 0.225 0.056 PB L2
ENSG00000237499 WAKMAR2 -925753 sc-eQTL 5.40e-01 -0.146 0.237 0.056 PB L2
ENSG00000027697 IFNGR1 -276969 sc-eQTL 8.69e-02 0.287 0.167 0.05 Pro_T L2
ENSG00000029363 BCLAF1 652629 sc-eQTL 1.90e-03 -0.536 0.17 0.05 Pro_T L2
ENSG00000112357 PEX7 119916 sc-eQTL 2.07e-01 0.258 0.203 0.05 Pro_T L2
ENSG00000118503 TNFAIP3 -924734 sc-eQTL 7.08e-01 -0.0383 0.102 0.05 Pro_T L2
ENSG00000146410 MTFR2 692145 sc-eQTL 1.74e-01 0.193 0.141 0.05 Pro_T L2
ENSG00000197442 MAP3K5 150003 sc-eQTL 9.26e-01 0.0185 0.198 0.05 Pro_T L2
ENSG00000237499 WAKMAR2 -925753 sc-eQTL 8.67e-01 0.0334 0.199 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000182747 SLC35D3 20179 eQTL 0.012 0.176 0.0698 0.0 0.0 0.0496

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000118503 \N -924734 2.64e-07 1.19e-07 3.56e-08 2.01e-07 8.83e-08 9.65e-08 1.42e-07 5.19e-08 1.4e-07 4.57e-08 1.62e-07 7.75e-08 1.41e-07 6.56e-08 6e-08 7.26e-08 3.98e-08 1.18e-07 5.36e-08 4.45e-08 1.08e-07 1.27e-07 1.32e-07 3.79e-08 1.37e-07 1.14e-07 1.11e-07 9.36e-08 1.05e-07 1.12e-07 9.91e-08 3.64e-08 3.3e-08 8.34e-08 7.02e-08 3.65e-08 4.99e-08 9.23e-08 6.55e-08 3.6e-08 3.57e-08 1.33e-07 4.1e-08 1.43e-08 5.43e-08 1.83e-08 1.23e-07 3.83e-09 4.85e-08