Genes within 1Mb (chr12:112617411:T:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 198573 sc-eQTL 6.59e-01 0.0499 0.113 0.059 PB L2
ENSG00000089022 MAPKAPK5 775183 sc-eQTL 4.89e-01 -0.17 0.245 0.059 PB L2
ENSG00000089060 SLC8B1 -742082 sc-eQTL 4.10e-01 -0.192 0.233 0.059 PB L2
ENSG00000089127 OAS1 -289372 sc-eQTL 7.28e-01 0.058 0.167 0.059 PB L2
ENSG00000089234 BRAP 931455 sc-eQTL 7.57e-01 0.0669 0.216 0.059 PB L2
ENSG00000089248 ERP29 604063 sc-eQTL 1.10e-01 -0.209 0.13 0.059 PB L2
ENSG00000111271 ACAD10 931355 sc-eQTL 9.01e-01 0.0293 0.235 0.059 PB L2
ENSG00000111275 ALDH2 850524 sc-eQTL 5.10e-01 0.152 0.23 0.059 PB L2
ENSG00000111300 NAA25 508615 sc-eQTL 2.76e-01 -0.266 0.243 0.059 PB L2
ENSG00000111331 OAS3 -321033 sc-eQTL 4.60e-01 -0.146 0.197 0.059 PB L2
ENSG00000111335 OAS2 -360984 sc-eQTL 8.34e-01 -0.0369 0.176 0.059 PB L2
ENSG00000123064 DDX54 -568068 sc-eQTL 3.59e-01 -0.217 0.235 0.059 PB L2
ENSG00000135144 DTX1 -439298 sc-eQTL 4.65e-02 -0.415 0.206 0.059 PB L2
ENSG00000135148 TRAFD1 491873 sc-eQTL 5.68e-01 -0.143 0.25 0.059 PB L2
ENSG00000139405 RITA1 -568115 sc-eQTL 9.14e-01 -0.0189 0.175 0.059 PB L2
ENSG00000151176 PLBD2 -741155 sc-eQTL 6.69e-01 0.0953 0.223 0.059 PB L2
ENSG00000173064 HECTD4 234972 sc-eQTL 2.38e-02 -0.407 0.178 0.059 PB L2
ENSG00000179295 PTPN11 199060 sc-eQTL 9.14e-01 -0.0261 0.241 0.059 PB L2
ENSG00000186815 TPCN1 -603639 sc-eQTL 2.46e-02 0.511 0.224 0.059 PB L2
ENSG00000198270 TMEM116 604226 sc-eQTL 5.92e-01 0.134 0.25 0.059 PB L2
ENSG00000234608 MAPKAPK5-AS1 774509 sc-eQTL 8.56e-02 0.354 0.204 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -742082 eQTL 0.0387 0.123 0.0593 0.0 0.0 0.0393
ENSG00000089234 BRAP 931455 pQTL 0.09 -0.0608 0.0358 0.001 0.0 0.0426
ENSG00000111275 ALDH2 850524 pQTL 0.136 -0.0944 0.0634 0.00186 0.0 0.0426
ENSG00000173064 HECTD4 234972 eQTL 8.05e-12 0.241 0.0349 0.0 0.0 0.0393


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089009 \N 198573 1.6e-06 2.44e-06 2.74e-07 1.56e-06 3.75e-07 6.36e-07 1.24e-06 4.16e-07 1.7e-06 7.11e-07 1.91e-06 1.2e-06 2.68e-06 5.06e-07 4.55e-07 9.98e-07 1.14e-06 1.18e-06 7.29e-07 5.27e-07 8.13e-07 1.87e-06 1.64e-06 5.72e-07 2.59e-06 7.81e-07 1.02e-06 8.31e-07 1.69e-06 1.53e-06 7.56e-07 1.91e-07 2.13e-07 5.48e-07 6.82e-07 4.6e-07 7.3e-07 2.24e-07 5.39e-07 2.37e-07 2.99e-07 2.73e-06 9.66e-08 1.38e-07 1.69e-07 2.73e-07 2.14e-07 2.77e-08 1.06e-07
ENSG00000111331 \N -321033 1.27e-06 9.19e-07 1.07e-07 4.37e-07 1.18e-07 3.08e-07 6.87e-07 1.91e-07 8.39e-07 3.05e-07 1.16e-06 5.35e-07 1.33e-06 2.14e-07 3.16e-07 3.68e-07 6.15e-07 4.95e-07 2.57e-07 1.86e-07 2.38e-07 5.71e-07 5.81e-07 2.89e-07 1.7e-06 2.57e-07 4.27e-07 3.78e-07 6.19e-07 9.11e-07 4.61e-07 6.13e-08 5.42e-08 2.15e-07 3.35e-07 1.46e-07 1.22e-07 8.15e-08 7.56e-08 1.56e-08 4.67e-08 1.22e-06 2.99e-08 5.8e-09 1.16e-07 4.28e-08 7.25e-08 1.18e-08 5.05e-08
ENSG00000173064 HECTD4 234972 1.27e-06 1.49e-06 2.88e-07 1.25e-06 2.79e-07 5.09e-07 1.6e-06 3.52e-07 1.4e-06 5.19e-07 2.03e-06 7.48e-07 2.51e-06 2.89e-07 5.17e-07 9.13e-07 8.94e-07 7.72e-07 6.96e-07 6.72e-07 4.57e-07 1.74e-06 9.91e-07 6.35e-07 2.41e-06 4.11e-07 8.29e-07 7.08e-07 1.38e-06 1.19e-06 7.84e-07 4.94e-08 1.48e-07 6.85e-07 5.49e-07 4.34e-07 4.79e-07 1.45e-07 4.52e-07 2.49e-07 1.8e-07 1.8e-06 7.72e-08 5.71e-08 1.74e-07 1.22e-07 1.78e-07 8.74e-08 5.63e-08