Genes within 1Mb (chr12:112612820:C:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 193982 sc-eQTL 6.59e-01 0.0499 0.113 0.059 PB L2
ENSG00000089022 MAPKAPK5 770592 sc-eQTL 4.89e-01 -0.17 0.245 0.059 PB L2
ENSG00000089060 SLC8B1 -746673 sc-eQTL 4.10e-01 -0.192 0.233 0.059 PB L2
ENSG00000089127 OAS1 -293963 sc-eQTL 7.28e-01 0.058 0.167 0.059 PB L2
ENSG00000089234 BRAP 926864 sc-eQTL 7.57e-01 0.0669 0.216 0.059 PB L2
ENSG00000089248 ERP29 599472 sc-eQTL 1.10e-01 -0.209 0.13 0.059 PB L2
ENSG00000111271 ACAD10 926764 sc-eQTL 9.01e-01 0.0293 0.235 0.059 PB L2
ENSG00000111275 ALDH2 845933 sc-eQTL 5.10e-01 0.152 0.23 0.059 PB L2
ENSG00000111300 NAA25 504024 sc-eQTL 2.76e-01 -0.266 0.243 0.059 PB L2
ENSG00000111331 OAS3 -325624 sc-eQTL 4.60e-01 -0.146 0.197 0.059 PB L2
ENSG00000111335 OAS2 -365575 sc-eQTL 8.34e-01 -0.0369 0.176 0.059 PB L2
ENSG00000123064 DDX54 -572659 sc-eQTL 3.59e-01 -0.217 0.235 0.059 PB L2
ENSG00000135144 DTX1 -443889 sc-eQTL 4.65e-02 -0.415 0.206 0.059 PB L2
ENSG00000135148 TRAFD1 487282 sc-eQTL 5.68e-01 -0.143 0.25 0.059 PB L2
ENSG00000139405 RITA1 -572706 sc-eQTL 9.14e-01 -0.0189 0.175 0.059 PB L2
ENSG00000151176 PLBD2 -745746 sc-eQTL 6.69e-01 0.0953 0.223 0.059 PB L2
ENSG00000173064 HECTD4 230381 sc-eQTL 2.38e-02 -0.407 0.178 0.059 PB L2
ENSG00000179295 PTPN11 194469 sc-eQTL 9.14e-01 -0.0261 0.241 0.059 PB L2
ENSG00000186815 TPCN1 -608230 sc-eQTL 2.46e-02 0.511 0.224 0.059 PB L2
ENSG00000198270 TMEM116 599635 sc-eQTL 5.92e-01 0.134 0.25 0.059 PB L2
ENSG00000234608 MAPKAPK5-AS1 769918 sc-eQTL 8.56e-02 0.354 0.204 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -746673 eQTL 0.0362 0.125 0.0593 0.0 0.0 0.0393
ENSG00000089234 BRAP 926864 pQTL 0.0843 -0.0619 0.0358 0.00104 0.0 0.0426
ENSG00000111275 ALDH2 845933 pQTL 0.134 -0.0951 0.0634 0.00187 0.0 0.0426
ENSG00000173064 HECTD4 230381 eQTL 8.5e-12 0.241 0.0349 0.0 0.0 0.0393


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089009 \N 193982 1.31e-06 1.13e-06 3.14e-07 1.23e-06 3.37e-07 6.38e-07 1.49e-06 3.75e-07 1.48e-06 4.66e-07 1.95e-06 7.04e-07 2.46e-06 2.63e-07 5.31e-07 8.12e-07 9.15e-07 7e-07 7.73e-07 6.49e-07 6.61e-07 1.6e-06 9.97e-07 6.25e-07 2.25e-06 4.79e-07 9.02e-07 7.19e-07 1.59e-06 1.25e-06 7.26e-07 2.1e-07 2.02e-07 6.83e-07 5.34e-07 4.4e-07 6.1e-07 2.24e-07 4.2e-07 2.94e-07 3.05e-07 1.62e-06 8.26e-08 1.3e-07 2.24e-07 1.26e-07 2.42e-07 3.77e-08 1.11e-07
ENSG00000111331 \N -325624 8.7e-07 5.74e-07 1.02e-07 4.29e-07 1.13e-07 1.85e-07 5.82e-07 1.21e-07 3.62e-07 2.12e-07 7.32e-07 3.3e-07 7.71e-07 1.1e-07 1.57e-07 1.84e-07 3.69e-07 3.79e-07 1.62e-07 1.51e-07 1.86e-07 3.15e-07 3.77e-07 1.61e-07 8.09e-07 2.4e-07 2.52e-07 2.24e-07 4.06e-07 4.61e-07 2.83e-07 6.84e-08 5.19e-08 1.4e-07 3.35e-07 7.57e-08 1.08e-07 7.64e-08 4.55e-08 2.71e-08 1.02e-07 4.82e-07 2.16e-08 5.54e-09 1.29e-07 1.78e-08 8.01e-08 1.26e-08 5.05e-08
ENSG00000173064 HECTD4 230381 1.26e-06 9.1e-07 3.02e-07 6.94e-07 1.79e-07 4.43e-07 1.32e-06 3.45e-07 1.12e-06 3.64e-07 1.39e-06 5.57e-07 1.76e-06 2.61e-07 4.49e-07 5.49e-07 7.74e-07 5.54e-07 3.71e-07 6.07e-07 3.39e-07 9.57e-07 8.52e-07 5.4e-07 1.95e-06 3.02e-07 6.37e-07 5.44e-07 1.15e-06 1.09e-06 5.26e-07 9.54e-08 1.81e-07 4.87e-07 4.31e-07 3.59e-07 4.13e-07 1.45e-07 1.73e-07 8.98e-08 3e-07 1.41e-06 6.53e-08 5.7e-08 1.93e-07 7.64e-08 1.8e-07 8.37e-08 6.51e-08
ENSG00000258359 \N 942458 2.61e-07 1.01e-07 3.62e-08 1.79e-07 9.02e-08 9.3e-08 1.41e-07 5.49e-08 1.42e-07 4.38e-08 1.6e-07 8.03e-08 1.26e-07 6.21e-08 5.44e-08 8.01e-08 4.48e-08 1.14e-07 5.2e-08 4.03e-08 1.05e-07 1.3e-07 1.3e-07 4.54e-08 1.31e-07 1.15e-07 1.12e-07 8.7e-08 1.02e-07 1.11e-07 9.58e-08 3.96e-08 2.91e-08 8.68e-08 8.93e-08 4.02e-08 4.79e-08 9.56e-08 8e-08 3.18e-08 4.57e-08 1.36e-07 4.12e-08 2.88e-08 6.38e-08 1.72e-08 1.24e-07 4.04e-09 5.04e-08