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Genes within 1Mb (chr12:112345822:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 -73016 sc-eQTL 1.33e-01 0.195 0.129 0.051 B_Activated L2
ENSG00000089022 MAPKAPK5 503594 sc-eQTL 2.67e-01 -0.236 0.212 0.051 B_Activated L2
ENSG00000089127 OAS1 -560961 sc-eQTL 2.37e-01 -0.192 0.161 0.051 B_Activated L2
ENSG00000089234 BRAP 659866 sc-eQTL 7.10e-01 -0.0792 0.212 0.051 B_Activated L2
ENSG00000089248 ERP29 332474 sc-eQTL 2.57e-01 -0.227 0.199 0.051 B_Activated L2
ENSG00000111252 SH2B3 939874 sc-eQTL 2.91e-01 -0.205 0.193 0.051 B_Activated L2
ENSG00000111271 ACAD10 659766 sc-eQTL 6.56e-01 -0.0906 0.203 0.051 B_Activated L2
ENSG00000111275 ALDH2 578935 sc-eQTL 3.04e-01 0.199 0.193 0.051 B_Activated L2
ENSG00000111300 NAA25 237026 sc-eQTL 7.68e-01 -0.0652 0.22 0.051 B_Activated L2
ENSG00000111331 OAS3 -592622 sc-eQTL 4.00e-01 -0.144 0.171 0.051 B_Activated L2
ENSG00000111335 OAS2 -632573 sc-eQTL 9.48e-01 -0.0127 0.196 0.051 B_Activated L2
ENSG00000123064 DDX54 -839657 sc-eQTL 6.17e-01 0.115 0.228 0.051 B_Activated L2
ENSG00000135144 DTX1 -710887 sc-eQTL 4.90e-01 -0.0986 0.143 0.051 B_Activated L2
ENSG00000135148 TRAFD1 220284 sc-eQTL 4.42e-01 0.156 0.202 0.051 B_Activated L2
ENSG00000139405 RITA1 -839704 sc-eQTL 8.47e-01 -0.0388 0.2 0.051 B_Activated L2
ENSG00000173064 HECTD4 -36617 sc-eQTL 3.59e-02 0.389 0.184 0.051 B_Activated L2
ENSG00000179295 PTPN11 -72529 sc-eQTL 6.10e-01 -0.111 0.218 0.051 B_Activated L2
ENSG00000186815 TPCN1 -875228 sc-eQTL 1.96e-01 -0.262 0.202 0.051 B_Activated L2
ENSG00000198270 TMEM116 332637 sc-eQTL 6.97e-01 -0.0756 0.194 0.051 B_Activated L2
ENSG00000198324 PHETA1 976701 sc-eQTL 9.20e-01 -0.0165 0.163 0.051 B_Activated L2
ENSG00000204842 ATXN2 746146 sc-eQTL 1.75e-01 0.276 0.203 0.051 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 502920 sc-eQTL 1.00e-01 0.351 0.213 0.051 B_Activated L2
ENSG00000089009 RPL6 -73016 sc-eQTL 5.48e-01 0.0689 0.115 0.051 NK_CD56bright L2
ENSG00000089022 MAPKAPK5 503594 sc-eQTL 6.00e-01 0.102 0.193 0.051 NK_CD56bright L2
ENSG00000089127 OAS1 -560961 sc-eQTL 4.38e-01 0.123 0.158 0.051 NK_CD56bright L2
ENSG00000089234 BRAP 659866 sc-eQTL 8.94e-01 -0.0265 0.199 0.051 NK_CD56bright L2
ENSG00000089248 ERP29 332474 sc-eQTL 2.53e-02 -0.404 0.179 0.051 NK_CD56bright L2
ENSG00000111252 SH2B3 939874 sc-eQTL 8.78e-01 0.028 0.183 0.051 NK_CD56bright L2
ENSG00000111271 ACAD10 659766 sc-eQTL 1.72e-01 0.275 0.201 0.051 NK_CD56bright L2
ENSG00000111300 NAA25 237026 sc-eQTL 1.76e-01 -0.252 0.185 0.051 NK_CD56bright L2
ENSG00000111331 OAS3 -592622 sc-eQTL 5.33e-02 -0.324 0.167 0.051 NK_CD56bright L2
ENSG00000111335 OAS2 -632573 sc-eQTL 4.14e-01 -0.121 0.148 0.051 NK_CD56bright L2
ENSG00000123064 DDX54 -839657 sc-eQTL 5.01e-01 0.137 0.203 0.051 NK_CD56bright L2
ENSG00000135148 TRAFD1 220284 sc-eQTL 9.80e-01 0.00476 0.185 0.051 NK_CD56bright L2
ENSG00000139405 RITA1 -839704 sc-eQTL 4.06e-01 0.17 0.204 0.051 NK_CD56bright L2
ENSG00000173064 HECTD4 -36617 sc-eQTL 3.63e-01 0.15 0.165 0.051 NK_CD56bright L2
ENSG00000179295 PTPN11 -72529 sc-eQTL 9.63e-01 0.00845 0.181 0.051 NK_CD56bright L2
ENSG00000198270 TMEM116 332637 sc-eQTL 1.49e-01 0.29 0.2 0.051 NK_CD56bright L2
ENSG00000204842 ATXN2 746146 sc-eQTL 4.13e-01 -0.146 0.178 0.051 NK_CD56bright L2
ENSG00000234608 MAPKAPK5-AS1 502920 sc-eQTL 9.82e-01 -0.00462 0.203 0.051 NK_CD56bright L2
ENSG00000089009 RPL6 -73016 sc-eQTL 6.86e-01 0.041 0.101 0.05 NK_HLA L2
ENSG00000089022 MAPKAPK5 503594 sc-eQTL 9.53e-01 -0.0121 0.203 0.05 NK_HLA L2
ENSG00000089127 OAS1 -560961 sc-eQTL 8.95e-01 0.0226 0.171 0.05 NK_HLA L2
ENSG00000089234 BRAP 659866 sc-eQTL 7.99e-01 -0.0531 0.208 0.05 NK_HLA L2
ENSG00000089248 ERP29 332474 sc-eQTL 9.65e-01 -0.00778 0.177 0.05 NK_HLA L2
ENSG00000111252 SH2B3 939874 sc-eQTL 7.11e-01 -0.0665 0.179 0.05 NK_HLA L2
ENSG00000111271 ACAD10 659766 sc-eQTL 6.74e-01 -0.0827 0.196 0.05 NK_HLA L2
ENSG00000111300 NAA25 237026 sc-eQTL 8.81e-01 0.0304 0.203 0.05 NK_HLA L2
ENSG00000111331 OAS3 -592622 sc-eQTL 9.81e-02 0.294 0.177 0.05 NK_HLA L2
ENSG00000111335 OAS2 -632573 sc-eQTL 1.34e-01 -0.26 0.173 0.05 NK_HLA L2
ENSG00000123064 DDX54 -839657 sc-eQTL 6.48e-01 0.0964 0.211 0.05 NK_HLA L2
ENSG00000135148 TRAFD1 220284 sc-eQTL 4.54e-01 0.147 0.196 0.05 NK_HLA L2
ENSG00000139405 RITA1 -839704 sc-eQTL 4.67e-01 0.148 0.204 0.05 NK_HLA L2
ENSG00000173064 HECTD4 -36617 sc-eQTL 3.95e-01 0.155 0.182 0.05 NK_HLA L2
ENSG00000179295 PTPN11 -72529 sc-eQTL 5.92e-02 -0.36 0.19 0.05 NK_HLA L2
ENSG00000198270 TMEM116 332637 sc-eQTL 2.66e-01 0.212 0.19 0.05 NK_HLA L2
ENSG00000204842 ATXN2 746146 sc-eQTL 1.72e-01 0.27 0.197 0.05 NK_HLA L2
ENSG00000234608 MAPKAPK5-AS1 502920 sc-eQTL 8.17e-01 -0.0476 0.206 0.05 NK_HLA L2
ENSG00000089009 RPL6 -73016 sc-eQTL 3.27e-01 -0.0862 0.0878 0.05 Pro_T L2
ENSG00000089022 MAPKAPK5 503594 sc-eQTL 4.05e-01 -0.168 0.202 0.05 Pro_T L2
ENSG00000089127 OAS1 -560961 sc-eQTL 1.18e-01 -0.188 0.12 0.05 Pro_T L2
ENSG00000089234 BRAP 659866 sc-eQTL 4.65e-01 -0.143 0.196 0.05 Pro_T L2
ENSG00000089248 ERP29 332474 sc-eQTL 5.05e-02 -0.236 0.12 0.05 Pro_T L2
ENSG00000111252 SH2B3 939874 sc-eQTL 8.18e-01 0.0421 0.183 0.05 Pro_T L2
ENSG00000111271 ACAD10 659766 sc-eQTL 8.88e-01 -0.0267 0.189 0.05 Pro_T L2
ENSG00000111300 NAA25 237026 sc-eQTL 8.98e-01 0.0251 0.195 0.05 Pro_T L2
ENSG00000111331 OAS3 -592622 sc-eQTL 5.94e-01 -0.0906 0.17 0.05 Pro_T L2
ENSG00000111335 OAS2 -632573 sc-eQTL 4.68e-01 -0.105 0.144 0.05 Pro_T L2
ENSG00000123064 DDX54 -839657 sc-eQTL 1.87e-01 0.225 0.17 0.05 Pro_T L2
ENSG00000135144 DTX1 -710887 sc-eQTL 4.48e-01 0.115 0.151 0.05 Pro_T L2
ENSG00000135148 TRAFD1 220284 sc-eQTL 9.96e-01 -0.00101 0.2 0.05 Pro_T L2
ENSG00000139405 RITA1 -839704 sc-eQTL 5.26e-01 -0.114 0.179 0.05 Pro_T L2
ENSG00000173064 HECTD4 -36617 sc-eQTL 6.79e-01 -0.0736 0.177 0.05 Pro_T L2
ENSG00000179295 PTPN11 -72529 sc-eQTL 2.22e-01 0.198 0.161 0.05 Pro_T L2
ENSG00000186815 TPCN1 -875228 sc-eQTL 3.27e-01 0.174 0.177 0.05 Pro_T L2
ENSG00000198270 TMEM116 332637 sc-eQTL 2.96e-01 0.211 0.201 0.05 Pro_T L2
ENSG00000204842 ATXN2 746146 sc-eQTL 1.74e-01 0.24 0.176 0.05 Pro_T L2
ENSG00000234608 MAPKAPK5-AS1 502920 sc-eQTL 7.57e-01 0.0564 0.182 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089009 RPL6 -73016 eQTL 0.00771 0.0405 0.0152 0.0 0.00181 0.0417
ENSG00000089234 BRAP 659866 eQTL 7.31e-06 0.119 0.0264 0.0 0.0 0.0417
ENSG00000111271 ACAD10 659758 eQTL 0.0299 -0.0807 0.0371 0.0 0.0 0.0417
ENSG00000111275 ALDH2 578935 pQTL 0.0103 0.174 0.0678 0.0 0.0 0.0397
ENSG00000111275 ALDH2 578935 eQTL 0.0229 0.0959 0.0421 0.0 0.0 0.0417
ENSG00000135148 TRAFD1 220277 eQTL 0.0695 0.047 0.0258 0.0011 0.0 0.0417
ENSG00000173064 HECTD4 -36617 eQTL 0.0102 0.0923 0.0358 0.0 0.0 0.0417

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina