Genes within 1Mb (chr12:111962362:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 120134 eQTL 1.47e-04 -0.0753 0.0197 0.0 0.0 0.16
ENSG00000111271 ACAD10 276298 eQTL 8.00e-03 0.0521 0.0196 0.0 0.0 0.16
ENSG00000111275 ALDH2 195475 pQTL 1.81e-02 0.0789 0.0334 0.0 0.0 0.167
ENSG00000111275 ALDH2 195475 eQTL 5.57e-01 -0.0131 0.0223 0.00209 0.0 0.16
ENSG00000111300 NAA25 -146434 eQTL 5.24e-31 0.179 0.0149 0.00837 0.00857 0.16
ENSG00000135148 TRAFD1 -163183 eQTL 3.29e-02 0.0292 0.0137 0.0 0.0 0.16
ENSG00000173064 HECTD4 -420077 eQTL 9.27e-16 -0.15 0.0184 0.00288 0.0 0.16
ENSG00000179295 PTPN11 -455989 eQTL 5.53e-19 0.165 0.0182 0.00181 0.00154 0.16
ENSG00000198270 TMEM116 -50823 eQTL 9.95e-33 0.266 0.0215 0.0 0.0 0.16
ENSG00000204842 ATXN2 362686 eQTL 4.25e-03 -0.051 0.0178 0.0 0.0 0.16
ENSG00000234608 MAPKAPK5-AS1 119460 eQTL 2.53e-29 0.189 0.0163 0.00378 0.00355 0.16


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111300 NAA25 -146434 1.03e-05 1.16e-05 2.53e-06 7.79e-06 2.4e-06 5.29e-06 1.28e-05 2.14e-06 1.18e-05 6.12e-06 1.4e-05 6.72e-06 1.62e-05 4.17e-06 3.51e-06 9e-06 5.55e-06 1.11e-05 2.97e-06 2.95e-06 6.27e-06 1.09e-05 1.04e-05 3.69e-06 2.14e-05 4.39e-06 7.21e-06 4.97e-06 1.25e-05 8.74e-06 6.74e-06 9.89e-07 1.19e-06 3.53e-06 6.33e-06 2.75e-06 1.82e-06 2.06e-06 2.25e-06 1.54e-06 1.14e-06 1.39e-05 1.76e-06 3.43e-07 8.64e-07 1.72e-06 2.13e-06 6.06e-07 4.9e-07
ENSG00000173064 HECTD4 -420077 2.63e-06 2.56e-06 8.49e-07 2.04e-06 4.53e-07 8.39e-07 2.07e-06 6.05e-07 2.17e-06 1.31e-06 2.48e-06 1.91e-06 3.49e-06 1.44e-06 8.88e-07 2.01e-06 1.18e-06 2.1e-06 1.36e-06 1.26e-06 1.21e-06 2.88e-06 2.65e-06 1.22e-06 4.19e-06 1.18e-06 1.65e-06 1.49e-06 2.15e-06 1.93e-06 1.83e-06 4.9e-07 3.72e-07 1.21e-06 1.95e-06 7.36e-07 8.45e-07 4.52e-07 1.09e-06 3.27e-07 1.67e-07 3.03e-06 5.42e-07 2.01e-07 3.27e-07 3.72e-07 6.63e-07 2.26e-07 2.1e-07
ENSG00000179295 PTPN11 -455989 1.91e-06 2.46e-06 6.67e-07 1.96e-06 4.56e-07 8.16e-07 1.52e-06 4.44e-07 1.75e-06 9.63e-07 2.02e-06 1.46e-06 3.23e-06 1.36e-06 6.04e-07 1.7e-06 9.51e-07 2.26e-06 8.06e-07 9.54e-07 9e-07 2.07e-06 2.14e-06 1e-06 3.56e-06 1.22e-06 1.42e-06 1.1e-06 1.78e-06 1.64e-06 1.19e-06 3.79e-07 3.35e-07 1.14e-06 1.68e-06 6.33e-07 7.27e-07 4.21e-07 7.27e-07 4.35e-07 2.88e-07 2.51e-06 6.14e-07 1.92e-07 3.87e-07 3.35e-07 8.67e-07 2.54e-07 2.97e-07
ENSG00000198270 TMEM116 -50823 2.47e-05 2.41e-05 4.87e-06 1.32e-05 4.49e-06 1.15e-05 3.41e-05 3.87e-06 2.44e-05 1.2e-05 3.02e-05 1.33e-05 3.74e-05 1.05e-05 5.6e-06 1.5e-05 1.22e-05 2.14e-05 6.27e-06 5.32e-06 1.08e-05 2.52e-05 2.47e-05 7.36e-06 3.77e-05 6.27e-06 1.08e-05 9.63e-06 2.5e-05 2.02e-05 1.5e-05 1.57e-06 1.96e-06 5.81e-06 1.01e-05 4.54e-06 2.48e-06 2.86e-06 3.6e-06 2.85e-06 1.7e-06 2.95e-05 2.86e-06 3.63e-07 2.06e-06 2.96e-06 3.74e-06 1.5e-06 1.51e-06
ENSG00000229186 \N 63099 2.1e-05 2.15e-05 4.29e-06 1.27e-05 3.92e-06 1e-05 3.06e-05 3.73e-06 2.19e-05 1.1e-05 2.71e-05 1.14e-05 3.45e-05 9.2e-06 5.31e-06 1.35e-05 1.06e-05 1.98e-05 5.69e-06 4.99e-06 9.54e-06 2.24e-05 2.21e-05 6.49e-06 3.51e-05 5.97e-06 9.71e-06 8.88e-06 2.23e-05 1.78e-05 1.31e-05 1.62e-06 1.73e-06 5.34e-06 9.4e-06 4.57e-06 2.18e-06 2.72e-06 3.4e-06 2.69e-06 1.67e-06 2.67e-05 2.72e-06 3.63e-07 2e-06 2.68e-06 3.43e-06 1.43e-06 1.36e-06
ENSG00000234608 MAPKAPK5-AS1 119460 1.26e-05 1.28e-05 2.86e-06 9.13e-06 2.46e-06 6.19e-06 1.84e-05 2.62e-06 1.49e-05 7.13e-06 1.74e-05 7.7e-06 2.09e-05 5.19e-06 4.13e-06 9.76e-06 6.9e-06 1.29e-05 3.55e-06 3.39e-06 6.73e-06 1.26e-05 1.33e-05 4.43e-06 2.57e-05 4.5e-06 7.72e-06 5.64e-06 1.48e-05 1.1e-05 8.77e-06 1.27e-06 1.22e-06 3.78e-06 7.16e-06 2.85e-06 1.8e-06 2.3e-06 2.14e-06 2e-06 1.34e-06 1.7e-05 2.39e-06 3.59e-07 1.03e-06 2.2e-06 2.57e-06 8.94e-07 7.39e-07