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Genes within 1Mb (chr12:110944220:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000076513 ANKRD13A 945034 sc-eQTL 8.22e-01 0.0429 0.191 0.051 B_Activated L2
ENSG00000089022 MAPKAPK5 -898008 sc-eQTL 3.64e-01 -0.196 0.216 0.051 B_Activated L2
ENSG00000089234 BRAP -741736 sc-eQTL 2.88e-01 -0.23 0.215 0.051 B_Activated L2
ENSG00000111229 ARPC3 493798 sc-eQTL 2.72e-01 0.172 0.156 0.051 B_Activated L2
ENSG00000111231 GPN3 474952 sc-eQTL 8.70e-01 -0.0322 0.197 0.051 B_Activated L2
ENSG00000111237 VPS29 442109 sc-eQTL 3.43e-01 -0.203 0.213 0.051 B_Activated L2
ENSG00000111252 SH2B3 -461728 sc-eQTL 3.45e-01 -0.187 0.197 0.051 B_Activated L2
ENSG00000111271 ACAD10 -741836 sc-eQTL 8.53e-01 -0.0385 0.207 0.051 B_Activated L2
ENSG00000111275 ALDH2 -822667 sc-eQTL 4.36e-01 0.154 0.197 0.051 B_Activated L2
ENSG00000122970 IFT81 819885 sc-eQTL 7.41e-01 0.0528 0.159 0.051 B_Activated L2
ENSG00000122986 HVCN1 239270 sc-eQTL 5.88e-01 0.0919 0.169 0.051 B_Activated L2
ENSG00000139436 GIT2 947831 sc-eQTL 5.89e-01 0.116 0.214 0.051 B_Activated L2
ENSG00000174437 ATP2A2 663464 sc-eQTL 8.38e-02 -0.353 0.203 0.051 B_Activated L2
ENSG00000174456 C12orf76 870586 sc-eQTL 9.14e-01 0.0243 0.224 0.051 B_Activated L2
ENSG00000186298 PPP1CC 201281 sc-eQTL 4.50e-01 0.172 0.228 0.051 B_Activated L2
ENSG00000196510 ANAPC7 540490 sc-eQTL 7.67e-01 0.0617 0.208 0.051 B_Activated L2
ENSG00000196850 PPTC7 360902 sc-eQTL 7.91e-01 -0.0565 0.212 0.051 B_Activated L2
ENSG00000198324 PHETA1 -424901 sc-eQTL 6.38e-01 0.0781 0.166 0.051 B_Activated L2
ENSG00000204842 ATXN2 -655456 sc-eQTL 6.95e-01 -0.0816 0.208 0.051 B_Activated L2
ENSG00000204852 TCTN1 330193 sc-eQTL 9.87e-01 0.00359 0.212 0.051 B_Activated L2
ENSG00000204856 FAM216A 475805 sc-eQTL 9.09e-01 0.023 0.2 0.051 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 -898682 sc-eQTL 3.94e-01 0.186 0.218 0.051 B_Activated L2
ENSG00000076513 ANKRD13A 945034 sc-eQTL 7.52e-01 0.0618 0.196 0.05 CD4_CTL L2
ENSG00000089022 MAPKAPK5 -898008 sc-eQTL 3.65e-01 -0.193 0.212 0.05 CD4_CTL L2
ENSG00000089234 BRAP -741736 sc-eQTL 9.40e-01 -0.0142 0.189 0.05 CD4_CTL L2
ENSG00000111229 ARPC3 493798 sc-eQTL 4.91e-01 -0.0899 0.13 0.05 CD4_CTL L2
ENSG00000111231 GPN3 474952 sc-eQTL 6.66e-01 0.0851 0.197 0.05 CD4_CTL L2
ENSG00000111237 VPS29 442109 sc-eQTL 7.28e-02 -0.347 0.193 0.05 CD4_CTL L2
ENSG00000111252 SH2B3 -461728 sc-eQTL 9.87e-01 -0.00327 0.2 0.05 CD4_CTL L2
ENSG00000111271 ACAD10 -741836 sc-eQTL 1.05e-01 -0.315 0.194 0.05 CD4_CTL L2
ENSG00000122986 HVCN1 239270 sc-eQTL 5.01e-01 -0.136 0.202 0.05 CD4_CTL L2
ENSG00000139436 GIT2 947831 sc-eQTL 2.09e-01 -0.255 0.203 0.05 CD4_CTL L2
ENSG00000174437 ATP2A2 663464 sc-eQTL 4.35e-01 0.148 0.189 0.05 CD4_CTL L2
ENSG00000174456 C12orf76 870586 sc-eQTL 3.15e-01 0.218 0.216 0.05 CD4_CTL L2
ENSG00000186298 PPP1CC 201281 sc-eQTL 2.49e-02 -0.41 0.182 0.05 CD4_CTL L2
ENSG00000196510 ANAPC7 540490 sc-eQTL 4.93e-01 0.136 0.198 0.05 CD4_CTL L2
ENSG00000196850 PPTC7 360902 sc-eQTL 2.43e-01 0.23 0.196 0.05 CD4_CTL L2
ENSG00000204842 ATXN2 -655456 sc-eQTL 2.44e-01 0.213 0.182 0.05 CD4_CTL L2
ENSG00000204852 TCTN1 330193 sc-eQTL 4.65e-02 -0.392 0.196 0.05 CD4_CTL L2
ENSG00000204856 FAM216A 475805 sc-eQTL 1.41e-01 -0.282 0.19 0.05 CD4_CTL L2
ENSG00000234608 MAPKAPK5-AS1 -898682 sc-eQTL 6.21e-01 0.0981 0.198 0.05 CD4_CTL L2
ENSG00000076513 ANKRD13A 945034 sc-eQTL 5.93e-01 0.107 0.2 0.063 PB L2
ENSG00000089022 MAPKAPK5 -898008 sc-eQTL 5.73e-01 -0.143 0.253 0.063 PB L2
ENSG00000089234 BRAP -741736 sc-eQTL 7.61e-01 0.0682 0.223 0.063 PB L2
ENSG00000111229 ARPC3 493798 sc-eQTL 3.40e-01 -0.135 0.141 0.063 PB L2
ENSG00000111231 GPN3 474952 sc-eQTL 1.93e-01 -0.269 0.206 0.063 PB L2
ENSG00000111237 VPS29 442109 sc-eQTL 9.11e-01 -0.0197 0.177 0.063 PB L2
ENSG00000111252 SH2B3 -461728 sc-eQTL 1.52e-01 0.344 0.239 0.063 PB L2
ENSG00000111271 ACAD10 -741836 sc-eQTL 6.31e-01 -0.117 0.243 0.063 PB L2
ENSG00000111275 ALDH2 -822667 sc-eQTL 8.48e-01 -0.0457 0.238 0.063 PB L2
ENSG00000122970 IFT81 819885 sc-eQTL 6.79e-02 -0.347 0.188 0.063 PB L2
ENSG00000122986 HVCN1 239270 sc-eQTL 7.87e-01 -0.0379 0.14 0.063 PB L2
ENSG00000139436 GIT2 947831 sc-eQTL 3.13e-01 0.26 0.257 0.063 PB L2
ENSG00000174437 ATP2A2 663464 sc-eQTL 2.27e-01 0.191 0.157 0.063 PB L2
ENSG00000174456 C12orf76 870586 sc-eQTL 9.62e-01 -0.0113 0.236 0.063 PB L2
ENSG00000186298 PPP1CC 201281 sc-eQTL 9.41e-02 -0.335 0.198 0.063 PB L2
ENSG00000196510 ANAPC7 540490 sc-eQTL 2.22e-01 0.278 0.227 0.063 PB L2
ENSG00000196850 PPTC7 360902 sc-eQTL 1.54e-01 -0.329 0.229 0.063 PB L2
ENSG00000198324 PHETA1 -424901 sc-eQTL 8.45e-02 -0.387 0.222 0.063 PB L2
ENSG00000204842 ATXN2 -655456 sc-eQTL 4.03e-01 0.215 0.257 0.063 PB L2
ENSG00000204852 TCTN1 330193 sc-eQTL 8.32e-01 -0.0417 0.196 0.063 PB L2
ENSG00000204856 FAM216A 475805 sc-eQTL 3.84e-01 -0.214 0.245 0.063 PB L2
ENSG00000234608 MAPKAPK5-AS1 -898682 sc-eQTL 8.23e-01 0.0481 0.214 0.063 PB L2
ENSG00000076513 ANKRD13A 945034 sc-eQTL 9.65e-01 -0.0101 0.229 0.051 pDC L2
ENSG00000089022 MAPKAPK5 -898008 sc-eQTL 9.38e-01 0.0184 0.236 0.051 pDC L2
ENSG00000089234 BRAP -741736 sc-eQTL 2.35e-01 -0.268 0.225 0.051 pDC L2
ENSG00000111229 ARPC3 493798 sc-eQTL 2.96e-01 -0.135 0.128 0.051 pDC L2
ENSG00000111231 GPN3 474952 sc-eQTL 7.87e-01 -0.0589 0.218 0.051 pDC L2
ENSG00000111237 VPS29 442109 sc-eQTL 1.30e-01 0.292 0.192 0.051 pDC L2
ENSG00000111249 CUX2 -89945 sc-eQTL 9.38e-01 0.0117 0.149 0.051 pDC L2
ENSG00000111252 SH2B3 -461728 sc-eQTL 3.63e-01 -0.101 0.11 0.051 pDC L2
ENSG00000111271 ACAD10 -741836 sc-eQTL 9.65e-01 -0.0103 0.233 0.051 pDC L2
ENSG00000111275 ALDH2 -822667 sc-eQTL 3.34e-02 0.355 0.165 0.051 pDC L2
ENSG00000122970 IFT81 819885 sc-eQTL 5.44e-02 0.38 0.196 0.051 pDC L2
ENSG00000122986 HVCN1 239270 sc-eQTL 6.94e-02 0.349 0.191 0.051 pDC L2
ENSG00000139436 GIT2 947831 sc-eQTL 6.43e-01 0.0871 0.188 0.051 pDC L2
ENSG00000174437 ATP2A2 663464 sc-eQTL 1.76e-01 -0.292 0.215 0.051 pDC L2
ENSG00000174456 C12orf76 870586 sc-eQTL 3.68e-01 -0.215 0.238 0.051 pDC L2
ENSG00000186298 PPP1CC 201281 sc-eQTL 3.85e-01 0.171 0.196 0.051 pDC L2
ENSG00000196510 ANAPC7 540490 sc-eQTL 1.96e-01 -0.275 0.212 0.051 pDC L2
ENSG00000196850 PPTC7 360902 sc-eQTL 4.08e-01 0.173 0.208 0.051 pDC L2
ENSG00000198324 PHETA1 -424901 sc-eQTL 3.25e-01 -0.188 0.191 0.051 pDC L2
ENSG00000204842 ATXN2 -655456 sc-eQTL 1.99e-01 -0.288 0.223 0.051 pDC L2
ENSG00000204852 TCTN1 330193 sc-eQTL 6.87e-01 -0.0876 0.217 0.051 pDC L2
ENSG00000204856 FAM216A 475805 sc-eQTL 2.41e-01 0.225 0.191 0.051 pDC L2
ENSG00000234608 MAPKAPK5-AS1 -898682 sc-eQTL 1.83e-01 0.282 0.211 0.051 pDC L2
ENSG00000257595 LINC02356 -425041 sc-eQTL 6.54e-01 -0.0753 0.168 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111231 GPN3 474952 eQTL 0.00492 -0.133 0.0471 0.0 0.0 0.0564
ENSG00000111249 CUX2 -89945 eQTL 0.0205 -0.128 0.055 0.00242 0.0 0.0564
ENSG00000111275 ALDH2 -822667 pQTL 0.00426 0.155 0.0542 0.0 0.0 0.0643
ENSG00000111275 ALDH2 -822667 eQTL 0.0375 0.0765 0.0367 0.0 0.0 0.0564
ENSG00000151164 RAD9B 442565 eQTL 0.0578 -0.16 0.0841 0.00167 0.0 0.0564
ENSG00000198324 PHETA1 -424901 eQTL 0.00042 -0.147 0.0415 0.0 0.0 0.0564
ENSG00000257595 LINC02356 -425062 eQTL 0.000215 -0.262 0.0705 0.0 0.0 0.0564
ENSG00000277595 AC007546.1 911975 eQTL 0.14 -0.0515 0.0348 0.00346 0.0 0.0564

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111231 GPN3 474952 4.68e-07 3.12e-07 1.96e-07 3.56e-07 9.82e-08 1.54e-07 4.68e-07 6.75e-08 2.38e-07 2.06e-07 5.73e-07 3.48e-07 4.11e-07 1.34e-07 2.96e-07 1.76e-07 1.17e-07 3.82e-07 2.65e-07 8.41e-08 2.52e-07 2.99e-07 3.04e-07 1.19e-07 4.11e-07 1.94e-07 1.97e-07 2.68e-07 2.4e-07 5.28e-07 1.88e-07 5.3e-08 5.19e-08 1.27e-07 6.35e-08 6.73e-08 1.05e-07 1.11e-07 7.54e-08 2.62e-08 4.89e-08 3.73e-07 1.67e-07 1.99e-07 1.92e-07 1.59e-08 1.3e-07 8.25e-08 5.86e-08
ENSG00000111252 \N -461728 5.37e-07 3.47e-07 2.41e-07 3.48e-07 9.45e-08 1.57e-07 5.13e-07 7.12e-08 2.6e-07 2.16e-07 6.56e-07 3.65e-07 4.74e-07 1.48e-07 3.13e-07 2e-07 1.62e-07 3.95e-07 2.88e-07 9.01e-08 2.61e-07 3.34e-07 3.3e-07 1.27e-07 4.54e-07 2.07e-07 2.22e-07 2.71e-07 2.76e-07 6.03e-07 1.93e-07 6.04e-08 4.42e-08 1.19e-07 7.44e-08 8.17e-08 8.35e-08 1.1e-07 7.99e-08 2.77e-08 4.79e-08 4.16e-07 2.48e-07 1.99e-07 1.85e-07 1.27e-08 1.08e-07 8.66e-08 6.26e-08
ENSG00000122970 \N 819885 2.67e-07 1.25e-07 6.57e-08 1.81e-07 9.79e-08 1e-07 1.61e-07 5.33e-08 1.41e-07 5.42e-08 1.55e-07 9e-08 1.41e-07 7.37e-08 6.25e-08 7.53e-08 3.87e-08 1.4e-07 7.12e-08 4.1e-08 1.27e-07 1.27e-07 1.45e-07 2.95e-08 1.37e-07 1.16e-07 1.07e-07 9.92e-08 1.09e-07 1.05e-07 9.64e-08 3.87e-08 3.96e-08 8.44e-08 8.98e-08 3.65e-08 5.61e-08 8.76e-08 6.42e-08 3.6e-08 3.98e-08 1.35e-07 1.21e-08 1.26e-08 5.4e-08 1.86e-08 1.15e-07 2.13e-09 4.81e-08
ENSG00000198324 PHETA1 -424901 7.3e-07 5.18e-07 2.88e-07 3.99e-07 1.05e-07 2.09e-07 5.9e-07 8.17e-08 3.66e-07 2.82e-07 9.47e-07 4.94e-07 6.27e-07 1.59e-07 4.03e-07 2.69e-07 2.98e-07 4.31e-07 3.74e-07 1.51e-07 2.53e-07 4.31e-07 4.13e-07 1.76e-07 6.65e-07 2.46e-07 2.72e-07 3.24e-07 3.88e-07 7.71e-07 2.6e-07 8.32e-08 4.77e-08 1.49e-07 1.39e-07 1.36e-07 1.45e-07 1.17e-07 1.11e-07 8.15e-09 2.87e-08 6.11e-07 3.73e-07 1.81e-07 1.66e-07 1.55e-08 1.58e-07 7.75e-08 5.26e-08
ENSG00000257595 LINC02356 -425062 7.3e-07 5.18e-07 2.88e-07 3.99e-07 1.05e-07 2.09e-07 5.9e-07 8.17e-08 3.62e-07 2.82e-07 9.47e-07 4.94e-07 6.27e-07 1.59e-07 4.03e-07 2.69e-07 2.77e-07 4.31e-07 3.74e-07 1.51e-07 2.53e-07 4.31e-07 4.13e-07 1.76e-07 6.65e-07 2.46e-07 2.72e-07 3.13e-07 3.88e-07 7.71e-07 2.6e-07 8.32e-08 4.77e-08 1.49e-07 1.39e-07 1.36e-07 1.45e-07 1.17e-07 1.11e-07 8.15e-09 2.87e-08 6.11e-07 3.73e-07 1.81e-07 1.66e-07 1.52e-08 1.58e-07 7.75e-08 5.26e-08