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Genes within 1Mb (chr12:110746322:G:GA):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000076513 ANKRD13A 747136 sc-eQTL 9.53e-01 0.0115 0.195 0.05 CD4_CTL L2
ENSG00000089234 BRAP -939634 sc-eQTL 1.09e-01 -0.302 0.187 0.05 CD4_CTL L2
ENSG00000111229 ARPC3 295900 sc-eQTL 9.66e-01 -0.00552 0.13 0.05 CD4_CTL L2
ENSG00000111231 GPN3 277054 sc-eQTL 1.13e-01 0.309 0.194 0.05 CD4_CTL L2
ENSG00000111237 VPS29 244211 sc-eQTL 7.47e-01 0.0623 0.193 0.05 CD4_CTL L2
ENSG00000111252 SH2B3 -659626 sc-eQTL 7.67e-01 0.059 0.199 0.05 CD4_CTL L2
ENSG00000111271 ACAD10 -939734 sc-eQTL 7.69e-01 -0.0571 0.194 0.05 CD4_CTL L2
ENSG00000122986 HVCN1 41372 sc-eQTL 2.00e-01 -0.258 0.2 0.05 CD4_CTL L2
ENSG00000139433 GLTP 865781 sc-eQTL 1.62e-01 -0.277 0.197 0.05 CD4_CTL L2
ENSG00000139436 GIT2 749933 sc-eQTL 3.51e-02 0.425 0.2 0.05 CD4_CTL L2
ENSG00000139437 TCHP 846058 sc-eQTL 2.02e-01 0.256 0.2 0.05 CD4_CTL L2
ENSG00000174437 ATP2A2 465566 sc-eQTL 9.27e-01 -0.0172 0.189 0.05 CD4_CTL L2
ENSG00000174456 C12orf76 672688 sc-eQTL 4.20e-01 -0.174 0.215 0.05 CD4_CTL L2
ENSG00000186298 PPP1CC 3383 sc-eQTL 6.68e-01 -0.0785 0.183 0.05 CD4_CTL L2
ENSG00000196510 ANAPC7 342592 sc-eQTL 8.98e-01 0.0253 0.198 0.05 CD4_CTL L2
ENSG00000196850 PPTC7 163004 sc-eQTL 6.05e-01 0.102 0.196 0.05 CD4_CTL L2
ENSG00000204842 ATXN2 -853354 sc-eQTL 8.77e-01 0.0282 0.182 0.05 CD4_CTL L2
ENSG00000204852 TCTN1 132295 sc-eQTL 3.32e-01 0.191 0.196 0.05 CD4_CTL L2
ENSG00000204856 FAM216A 277907 sc-eQTL 7.94e-01 0.0498 0.19 0.05 CD4_CTL L2
ENSG00000076513 ANKRD13A 747136 sc-eQTL 5.45e-01 -0.113 0.187 0.05 NK_HLA L2
ENSG00000089234 BRAP -939634 sc-eQTL 6.57e-01 -0.0927 0.209 0.05 NK_HLA L2
ENSG00000111229 ARPC3 295900 sc-eQTL 7.77e-01 0.038 0.134 0.05 NK_HLA L2
ENSG00000111231 GPN3 277054 sc-eQTL 6.65e-01 0.0886 0.204 0.05 NK_HLA L2
ENSG00000111237 VPS29 244211 sc-eQTL 5.72e-01 -0.119 0.21 0.05 NK_HLA L2
ENSG00000111252 SH2B3 -659626 sc-eQTL 4.84e-01 -0.126 0.18 0.05 NK_HLA L2
ENSG00000111271 ACAD10 -939734 sc-eQTL 6.51e-01 0.0893 0.197 0.05 NK_HLA L2
ENSG00000122986 HVCN1 41372 sc-eQTL 6.25e-01 -0.0962 0.197 0.05 NK_HLA L2
ENSG00000139433 GLTP 865781 sc-eQTL 2.62e-01 -0.218 0.194 0.05 NK_HLA L2
ENSG00000139436 GIT2 749933 sc-eQTL 7.28e-01 -0.0734 0.211 0.05 NK_HLA L2
ENSG00000139437 TCHP 846058 sc-eQTL 5.90e-01 -0.104 0.193 0.05 NK_HLA L2
ENSG00000174437 ATP2A2 465566 sc-eQTL 3.67e-01 0.162 0.179 0.05 NK_HLA L2
ENSG00000174456 C12orf76 672688 sc-eQTL 7.53e-01 -0.0675 0.214 0.05 NK_HLA L2
ENSG00000186298 PPP1CC 3383 sc-eQTL 4.52e-01 0.14 0.186 0.05 NK_HLA L2
ENSG00000196510 ANAPC7 342592 sc-eQTL 9.23e-01 0.0198 0.206 0.05 NK_HLA L2
ENSG00000196850 PPTC7 163004 sc-eQTL 1.74e-01 -0.255 0.187 0.05 NK_HLA L2
ENSG00000204842 ATXN2 -853354 sc-eQTL 6.52e-01 -0.0896 0.199 0.05 NK_HLA L2
ENSG00000204852 TCTN1 132295 sc-eQTL 9.12e-01 0.0217 0.197 0.05 NK_HLA L2
ENSG00000204856 FAM216A 277907 sc-eQTL 6.97e-01 -0.075 0.192 0.05 NK_HLA L2
ENSG00000076513 ANKRD13A 747136 sc-eQTL 4.54e-01 0.148 0.197 0.052 PB L2
ENSG00000089234 BRAP -939634 sc-eQTL 8.66e-01 0.0372 0.22 0.052 PB L2
ENSG00000111229 ARPC3 295900 sc-eQTL 6.73e-02 0.254 0.137 0.052 PB L2
ENSG00000111231 GPN3 277054 sc-eQTL 6.31e-01 -0.0982 0.204 0.052 PB L2
ENSG00000111237 VPS29 244211 sc-eQTL 7.93e-01 -0.0457 0.174 0.052 PB L2
ENSG00000111252 SH2B3 -659626 sc-eQTL 2.54e-02 0.525 0.232 0.052 PB L2
ENSG00000111271 ACAD10 -939734 sc-eQTL 9.50e-01 -0.0152 0.24 0.052 PB L2
ENSG00000122970 IFT81 621987 sc-eQTL 4.05e-02 0.383 0.185 0.052 PB L2
ENSG00000122986 HVCN1 41372 sc-eQTL 9.82e-02 -0.227 0.136 0.052 PB L2
ENSG00000139433 GLTP 865781 sc-eQTL 3.81e-01 0.219 0.249 0.052 PB L2
ENSG00000139436 GIT2 749933 sc-eQTL 6.29e-01 -0.123 0.254 0.052 PB L2
ENSG00000139437 TCHP 846058 sc-eQTL 2.00e-01 0.299 0.232 0.052 PB L2
ENSG00000174437 ATP2A2 465566 sc-eQTL 1.06e-01 0.251 0.154 0.052 PB L2
ENSG00000174456 C12orf76 672688 sc-eQTL 3.14e-01 -0.234 0.231 0.052 PB L2
ENSG00000186298 PPP1CC 3383 sc-eQTL 1.56e-01 -0.28 0.196 0.052 PB L2
ENSG00000196510 ANAPC7 342592 sc-eQTL 3.61e-01 -0.205 0.224 0.052 PB L2
ENSG00000196850 PPTC7 163004 sc-eQTL 8.59e-01 -0.0406 0.228 0.052 PB L2
ENSG00000198324 PHETA1 -622799 sc-eQTL 8.46e-01 -0.0433 0.222 0.052 PB L2
ENSG00000204842 ATXN2 -853354 sc-eQTL 2.73e-01 -0.277 0.252 0.052 PB L2
ENSG00000204852 TCTN1 132295 sc-eQTL 5.40e-01 -0.118 0.193 0.052 PB L2
ENSG00000204856 FAM216A 277907 sc-eQTL 7.56e-01 -0.0755 0.242 0.052 PB L2
ENSG00000076513 ANKRD13A 747136 sc-eQTL 9.05e-01 0.0228 0.19 0.05 Pro_T L2
ENSG00000089234 BRAP -939634 sc-eQTL 6.04e-01 0.105 0.203 0.05 Pro_T L2
ENSG00000111229 ARPC3 295900 sc-eQTL 2.92e-02 0.273 0.124 0.05 Pro_T L2
ENSG00000111231 GPN3 277054 sc-eQTL 4.87e-01 -0.103 0.148 0.05 Pro_T L2
ENSG00000111237 VPS29 244211 sc-eQTL 6.09e-01 -0.0743 0.145 0.05 Pro_T L2
ENSG00000111252 SH2B3 -659626 sc-eQTL 7.76e-01 0.0538 0.189 0.05 Pro_T L2
ENSG00000111271 ACAD10 -939734 sc-eQTL 4.06e-01 0.163 0.196 0.05 Pro_T L2
ENSG00000122986 HVCN1 41372 sc-eQTL 3.84e-01 -0.172 0.197 0.05 Pro_T L2
ENSG00000139433 GLTP 865781 sc-eQTL 4.40e-01 -0.149 0.193 0.05 Pro_T L2
ENSG00000139436 GIT2 749933 sc-eQTL 2.23e-02 -0.459 0.199 0.05 Pro_T L2
ENSG00000139437 TCHP 846058 sc-eQTL 4.85e-01 -0.143 0.205 0.05 Pro_T L2
ENSG00000174437 ATP2A2 465566 sc-eQTL 6.22e-01 -0.0691 0.14 0.05 Pro_T L2
ENSG00000174456 C12orf76 672688 sc-eQTL 6.40e-02 0.361 0.194 0.05 Pro_T L2
ENSG00000186298 PPP1CC 3383 sc-eQTL 6.43e-01 -0.0675 0.145 0.05 Pro_T L2
ENSG00000196510 ANAPC7 342592 sc-eQTL 2.94e-01 -0.195 0.186 0.05 Pro_T L2
ENSG00000196850 PPTC7 163004 sc-eQTL 4.47e-01 0.157 0.207 0.05 Pro_T L2
ENSG00000204842 ATXN2 -853354 sc-eQTL 5.53e-01 -0.108 0.182 0.05 Pro_T L2
ENSG00000204852 TCTN1 132295 sc-eQTL 7.59e-01 -0.061 0.198 0.05 Pro_T L2
ENSG00000204856 FAM216A 277907 sc-eQTL 2.61e-01 0.219 0.194 0.05 Pro_T L2
ENSG00000076513 ANKRD13A 747136 sc-eQTL 6.91e-01 0.0889 0.223 0.051 pDC L2
ENSG00000089234 BRAP -939634 sc-eQTL 6.62e-01 -0.0968 0.221 0.051 pDC L2
ENSG00000111229 ARPC3 295900 sc-eQTL 9.09e-01 0.0145 0.126 0.051 pDC L2
ENSG00000111231 GPN3 277054 sc-eQTL 5.93e-01 -0.114 0.213 0.051 pDC L2
ENSG00000111237 VPS29 244211 sc-eQTL 7.27e-01 -0.0661 0.189 0.051 pDC L2
ENSG00000111249 CUX2 -287843 sc-eQTL 6.36e-01 0.0691 0.146 0.051 pDC L2
ENSG00000111252 SH2B3 -659626 sc-eQTL 5.02e-01 -0.0725 0.108 0.051 pDC L2
ENSG00000111271 ACAD10 -939734 sc-eQTL 3.22e-01 -0.226 0.227 0.051 pDC L2
ENSG00000122970 IFT81 621987 sc-eQTL 3.67e-01 -0.175 0.194 0.051 pDC L2
ENSG00000122986 HVCN1 41372 sc-eQTL 8.29e-01 0.0408 0.189 0.051 pDC L2
ENSG00000139433 GLTP 865781 sc-eQTL 1.86e-01 -0.258 0.195 0.051 pDC L2
ENSG00000139436 GIT2 749933 sc-eQTL 4.36e-01 0.143 0.183 0.051 pDC L2
ENSG00000139437 TCHP 846058 sc-eQTL 4.96e-01 0.133 0.195 0.051 pDC L2
ENSG00000174437 ATP2A2 465566 sc-eQTL 5.43e-01 0.129 0.211 0.051 pDC L2
ENSG00000174456 C12orf76 672688 sc-eQTL 3.92e-01 -0.2 0.233 0.051 pDC L2
ENSG00000186298 PPP1CC 3383 sc-eQTL 8.97e-01 0.0249 0.192 0.051 pDC L2
ENSG00000196510 ANAPC7 342592 sc-eQTL 2.24e-01 0.253 0.207 0.051 pDC L2
ENSG00000196850 PPTC7 163004 sc-eQTL 9.55e-01 -0.0117 0.204 0.051 pDC L2
ENSG00000198324 PHETA1 -622799 sc-eQTL 1.19e-01 -0.29 0.185 0.051 pDC L2
ENSG00000204842 ATXN2 -853354 sc-eQTL 7.13e-01 0.0809 0.22 0.051 pDC L2
ENSG00000204852 TCTN1 132295 sc-eQTL 6.49e-01 0.097 0.213 0.051 pDC L2
ENSG00000204856 FAM216A 277907 sc-eQTL 8.96e-01 0.0245 0.188 0.051 pDC L2
ENSG00000257595 LINC02356 -622939 sc-eQTL 4.88e-01 -0.114 0.164 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089234 BRAP -939634 pQTL 0.00772 0.0935 0.035 0.00299 0.0 0.0506
ENSG00000111199 TRPV4 912921 eQTL 0.0103 -0.169 0.0656 0.0 0.0 0.0505
ENSG00000139437 TCHP 846048 eQTL 0.0131 0.0958 0.0386 0.0 0.0 0.0505
ENSG00000186298 PPP1CC 3383 eQTL 6.88e-03 -0.0775 0.0286 0.00323 0.0 0.0505
ENSG00000198324 PHETA1 -622799 eQTL 0.000514 -0.158 0.0454 0.0 0.0 0.0505
ENSG00000204852 TCTN1 132295 eQTL 4.97e-02 0.0703 0.0358 0.0 0.0 0.0505

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111199 TRPV4 912921 1.6e-06 6.26e-07 2.89e-07 4.88e-07 1.1e-07 6.28e-07 1.13e-06 6.12e-08 5.02e-07 2.72e-07 1.1e-06 3.08e-07 9.23e-07 1.1e-07 1.48e-07 2.85e-07 9.3e-08 4.24e-07 1.56e-07 1.17e-07 2.35e-07 5.2e-07 5.49e-07 1.06e-07 7.71e-07 2.33e-07 2.62e-07 2.65e-07 6.85e-07 9.58e-07 2.11e-07 4.22e-08 4.23e-08 5.18e-07 2.82e-07 5.14e-08 4.49e-08 8.61e-08 4.11e-08 7.55e-08 5.45e-08 8.79e-07 9.42e-08 4.22e-08 3.36e-08 1.35e-08 7.66e-08 4.2e-09 4.85e-08
ENSG00000139437 TCHP 846048 1.9e-06 8.16e-07 3.2e-07 7.39e-07 1.02e-07 6.73e-07 1.38e-06 6.57e-08 6.53e-07 3.16e-07 1.15e-06 3.5e-07 1.02e-06 1.6e-07 2.18e-07 3.79e-07 1.73e-07 4.4e-07 2.12e-07 1.53e-07 2.43e-07 5.66e-07 6.26e-07 1.36e-07 1.13e-06 2.4e-07 3.68e-07 3.24e-07 8.56e-07 1.11e-06 2.83e-07 3.92e-08 4.97e-08 6.95e-07 3.08e-07 5.7e-08 4.54e-08 9.03e-08 6.01e-08 5.88e-08 5.41e-08 1.13e-06 2.32e-07 8.1e-08 4e-08 2.07e-08 9.25e-08 4.09e-09 4.77e-08
ENSG00000186298 PPP1CC 3383 0.000208 0.000161 1.57e-05 4.5e-05 1.43e-05 6.97e-05 0.000143 1.57e-05 0.000113 5e-05 0.000138 6.39e-05 0.000166 5.07e-05 2.33e-05 9.28e-05 6.15e-05 7.28e-05 2.35e-05 1.84e-05 4.53e-05 0.000146 0.000124 3.22e-05 0.000173 3.37e-05 6.31e-05 4.32e-05 0.000106 4.92e-05 8.26e-05 5.64e-06 7.41e-06 2.3e-05 2.33e-05 1.09e-05 6.88e-06 5.95e-06 1.29e-05 7.31e-06 2.93e-06 0.000145 1.76e-05 4.31e-07 8.31e-06 1.19e-05 1.61e-05 4.08e-06 3.13e-06
ENSG00000198324 PHETA1 -622799 4.54e-06 1.22e-06 2.91e-07 1.41e-06 1.09e-07 7.43e-07 1.31e-06 1.42e-07 1.35e-06 5.19e-07 2.07e-06 5.77e-07 2.15e-06 2.96e-07 5.72e-07 9.23e-07 8.26e-07 8e-07 5.54e-07 4.71e-07 7.96e-07 1.69e-06 1.12e-06 5.79e-07 2.25e-06 3.59e-07 8.36e-07 6.93e-07 1.63e-06 1.24e-06 5.26e-07 3.99e-08 4.98e-08 8.95e-07 3.81e-07 2.42e-07 1.1e-07 5.71e-08 2.44e-07 8.72e-09 4.36e-08 2.09e-06 3.77e-07 1.96e-07 2.03e-07 1.28e-07 1.68e-07 1.88e-09 4.85e-08
ENSG00000204856 \N 277541 3.49e-05 7.87e-06 6.65e-07 3.85e-06 4.82e-07 4.28e-06 8.61e-06 4.97e-07 4.94e-06 2.97e-06 6.14e-06 1.66e-06 7.36e-06 2.03e-06 1.21e-06 3.9e-06 1.92e-06 3.76e-06 1.35e-06 1.21e-06 2.61e-06 5.36e-06 4.77e-06 1.78e-06 6.37e-06 1.32e-06 2.45e-06 1.79e-06 5.8e-06 4.31e-06 2.17e-06 4.53e-08 6.12e-07 2.2e-06 1.82e-06 7.09e-07 7.24e-07 2.29e-07 1.3e-06 1.68e-07 1.16e-07 9.72e-06 2.21e-06 1.7e-07 4.03e-07 3.33e-07 7.28e-07 4.47e-08 6.26e-08
ENSG00000241413 \N 879813 1.81e-06 6.81e-07 2.81e-07 6.31e-07 1.07e-07 6.38e-07 1.21e-06 5.84e-08 5.74e-07 2.88e-07 1.09e-06 3.27e-07 9.79e-07 1.41e-07 1.71e-07 3.41e-07 1.17e-07 4.39e-07 1.77e-07 1.32e-07 2.61e-07 5.36e-07 5.81e-07 1.23e-07 9.15e-07 2.4e-07 3.1e-07 2.69e-07 8e-07 1.04e-06 2.55e-07 3.96e-08 4.27e-08 6.38e-07 3.05e-07 5.23e-08 3.91e-08 8.63e-08 4e-08 7.5e-08 5.03e-08 1.01e-06 1.24e-07 6.48e-08 3.3e-08 1.46e-08 9.23e-08 4.14e-09 4.85e-08
ENSG00000277595 \N 714077 3.53e-06 9.15e-07 2.74e-07 1.29e-06 9.82e-08 8.4e-07 1.52e-06 8.86e-08 1.09e-06 3.66e-07 1.56e-06 5.15e-07 1.63e-06 2.54e-07 4.21e-07 7.13e-07 5.63e-07 5.55e-07 3.5e-07 2.73e-07 4.19e-07 1.19e-06 8.84e-07 3.29e-07 1.8e-06 2.37e-07 6.23e-07 5.27e-07 1.39e-06 1.24e-06 4.39e-07 3.06e-08 5.42e-08 5.5e-07 3.35e-07 1.21e-07 6.57e-08 7.63e-08 1.11e-07 2.8e-08 5.65e-08 1.49e-06 4.98e-07 1.67e-07 1.19e-07 7.29e-08 1.24e-07 3.86e-09 5.04e-08
ENSG00000280426 \N 747195 3.16e-06 9.44e-07 2.57e-07 1.2e-06 1.1e-07 8e-07 1.5e-06 7.79e-08 8.92e-07 3.46e-07 1.39e-06 4.55e-07 1.46e-06 2.05e-07 3.96e-07 6e-07 4.73e-07 5.71e-07 2.92e-07 2.15e-07 3.49e-07 1.04e-06 9.22e-07 2.89e-07 1.59e-06 2.64e-07 5.43e-07 4.7e-07 1.25e-06 1.34e-06 3.81e-07 3.65e-08 6.08e-08 6.19e-07 3.8e-07 8.32e-08 5.62e-08 8.17e-08 8.72e-08 2.59e-08 5.05e-08 1.57e-06 3.92e-07 1.57e-07 8.68e-08 5.38e-08 8.13e-08 3.89e-09 4.91e-08
ENSG00000286220 \N 672636 4.12e-06 9.2e-07 2.53e-07 1.22e-06 9.33e-08 7.5e-07 1.26e-06 1.03e-07 1.14e-06 4.28e-07 1.84e-06 5.4e-07 1.96e-06 2.57e-07 4.28e-07 8.28e-07 7.47e-07 6.5e-07 3.56e-07 3.72e-07 6.12e-07 1.42e-06 8.94e-07 4.62e-07 1.95e-06 2.9e-07 6.81e-07 6.46e-07 1.48e-06 1.16e-06 4.54e-07 2.96e-08 4.62e-08 6.17e-07 3.22e-07 1.44e-07 7.97e-08 6.98e-08 1.33e-07 1.57e-08 6.07e-08 1.62e-06 6.51e-07 1.99e-07 1.48e-07 8.9e-08 1.1e-07 3.8e-09 4.73e-08