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Genes within 1Mb (chr12:110543861:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000076513 ANKRD13A 544675 sc-eQTL 9.07e-01 -0.0213 0.183 0.05 NK_HLA L2
ENSG00000110921 MVK 970606 sc-eQTL 1.33e-01 -0.292 0.193 0.05 NK_HLA L2
ENSG00000111229 ARPC3 93439 sc-eQTL 4.22e-01 0.106 0.131 0.05 NK_HLA L2
ENSG00000111231 GPN3 74593 sc-eQTL 7.31e-01 0.0689 0.2 0.05 NK_HLA L2
ENSG00000111237 VPS29 41750 sc-eQTL 9.30e-01 -0.0181 0.206 0.05 NK_HLA L2
ENSG00000111252 SH2B3 -862087 sc-eQTL 3.29e-02 -0.375 0.175 0.05 NK_HLA L2
ENSG00000122986 HVCN1 -161089 sc-eQTL 3.24e-01 0.19 0.192 0.05 NK_HLA L2
ENSG00000139428 MMAB 970281 sc-eQTL 8.55e-02 0.335 0.194 0.05 NK_HLA L2
ENSG00000139433 GLTP 663320 sc-eQTL 1.32e-01 0.286 0.189 0.05 NK_HLA L2
ENSG00000139436 GIT2 547472 sc-eQTL 5.93e-02 -0.388 0.205 0.05 NK_HLA L2
ENSG00000139437 TCHP 643597 sc-eQTL 5.13e-01 0.124 0.19 0.05 NK_HLA L2
ENSG00000174437 ATP2A2 263105 sc-eQTL 9.63e-01 0.00809 0.176 0.05 NK_HLA L2
ENSG00000174456 C12orf76 470227 sc-eQTL 2.01e-01 -0.268 0.209 0.05 NK_HLA L2
ENSG00000186298 PPP1CC -199078 sc-eQTL 1.57e-01 -0.257 0.181 0.05 NK_HLA L2
ENSG00000196510 ANAPC7 140131 sc-eQTL 1.74e-02 -0.477 0.199 0.05 NK_HLA L2
ENSG00000196850 PPTC7 -39457 sc-eQTL 4.03e-01 0.154 0.184 0.05 NK_HLA L2
ENSG00000204852 TCTN1 -70166 sc-eQTL 5.05e-01 0.129 0.192 0.05 NK_HLA L2
ENSG00000204856 FAM216A 75446 sc-eQTL 2.48e-01 0.218 0.188 0.05 NK_HLA L2
ENSG00000076513 ANKRD13A 544675 sc-eQTL 3.44e-01 0.186 0.196 0.05 Pro_T L2
ENSG00000110921 MVK 970606 sc-eQTL 4.95e-01 0.138 0.201 0.05 Pro_T L2
ENSG00000111229 ARPC3 93439 sc-eQTL 5.25e-01 -0.0826 0.13 0.05 Pro_T L2
ENSG00000111231 GPN3 74593 sc-eQTL 5.28e-02 -0.295 0.152 0.05 Pro_T L2
ENSG00000111237 VPS29 41750 sc-eQTL 6.18e-01 -0.0747 0.15 0.05 Pro_T L2
ENSG00000111252 SH2B3 -862087 sc-eQTL 9.05e-01 0.0234 0.195 0.05 Pro_T L2
ENSG00000122986 HVCN1 -161089 sc-eQTL 9.23e-01 -0.0197 0.204 0.05 Pro_T L2
ENSG00000139428 MMAB 970281 sc-eQTL 8.45e-01 0.0387 0.197 0.05 Pro_T L2
ENSG00000139433 GLTP 663320 sc-eQTL 5.88e-01 -0.108 0.199 0.05 Pro_T L2
ENSG00000139436 GIT2 547472 sc-eQTL 9.70e-01 0.00774 0.208 0.05 Pro_T L2
ENSG00000139437 TCHP 643597 sc-eQTL 8.93e-01 0.0285 0.212 0.05 Pro_T L2
ENSG00000174437 ATP2A2 263105 sc-eQTL 9.19e-01 -0.0148 0.145 0.05 Pro_T L2
ENSG00000174456 C12orf76 470227 sc-eQTL 2.11e-01 -0.252 0.201 0.05 Pro_T L2
ENSG00000186298 PPP1CC -199078 sc-eQTL 7.76e-01 -0.0429 0.15 0.05 Pro_T L2
ENSG00000196510 ANAPC7 140131 sc-eQTL 6.15e-01 0.097 0.192 0.05 Pro_T L2
ENSG00000196850 PPTC7 -39457 sc-eQTL 5.86e-01 -0.116 0.214 0.05 Pro_T L2
ENSG00000204852 TCTN1 -70166 sc-eQTL 2.14e-01 -0.254 0.204 0.05 Pro_T L2
ENSG00000204856 FAM216A 75446 sc-eQTL 4.56e-01 0.15 0.201 0.05 Pro_T L2
ENSG00000076513 ANKRD13A 544675 sc-eQTL 4.25e-02 -0.321 0.157 0.052 ncMono L2
ENSG00000110921 MVK 970606 sc-eQTL 2.24e-01 -0.236 0.193 0.052 ncMono L2
ENSG00000111199 TRPV4 710460 sc-eQTL 7.77e-01 0.0422 0.148 0.052 ncMono L2
ENSG00000111229 ARPC3 93439 sc-eQTL 1.47e-01 0.182 0.125 0.052 ncMono L2
ENSG00000111231 GPN3 74593 sc-eQTL 6.86e-01 -0.073 0.181 0.052 ncMono L2
ENSG00000111237 VPS29 41750 sc-eQTL 8.69e-02 -0.242 0.141 0.052 ncMono L2
ENSG00000111252 SH2B3 -862087 sc-eQTL 6.54e-01 -0.0672 0.15 0.052 ncMono L2
ENSG00000122986 HVCN1 -161089 sc-eQTL 8.06e-02 0.277 0.158 0.052 ncMono L2
ENSG00000139428 MMAB 970281 sc-eQTL 3.35e-01 0.192 0.199 0.052 ncMono L2
ENSG00000139433 GLTP 663320 sc-eQTL 5.03e-01 0.13 0.194 0.052 ncMono L2
ENSG00000139436 GIT2 547472 sc-eQTL 1.95e-01 -0.194 0.149 0.052 ncMono L2
ENSG00000139437 TCHP 643597 sc-eQTL 6.61e-01 -0.0802 0.183 0.052 ncMono L2
ENSG00000174437 ATP2A2 263105 sc-eQTL 5.10e-02 -0.374 0.19 0.052 ncMono L2
ENSG00000174456 C12orf76 470227 sc-eQTL 5.20e-01 -0.142 0.22 0.052 ncMono L2
ENSG00000186298 PPP1CC -199078 sc-eQTL 4.93e-01 -0.129 0.189 0.052 ncMono L2
ENSG00000196510 ANAPC7 140131 sc-eQTL 9.10e-01 -0.0215 0.189 0.052 ncMono L2
ENSG00000196850 PPTC7 -39457 sc-eQTL 6.68e-01 0.0722 0.168 0.052 ncMono L2
ENSG00000198324 PHETA1 -825260 sc-eQTL 7.72e-01 0.0568 0.196 0.052 ncMono L2
ENSG00000204852 TCTN1 -70166 sc-eQTL 5.93e-01 0.0979 0.183 0.052 ncMono L2
ENSG00000204856 FAM216A 75446 sc-eQTL 5.34e-01 -0.12 0.192 0.052 ncMono L2
ENSG00000257595 LINC02356 -825400 sc-eQTL 2.96e-01 0.199 0.19 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111229 ARPC3 93524 eQTL 0.0346 0.041 0.0194 0.0 0.0 0.0412
ENSG00000111237 VPS29 41744 eQTL 6.03e-13 0.207 0.0283 0.0317 0.0519 0.0412
ENSG00000111249 CUX2 -490304 eQTL 0.0992 0.103 0.0621 0.00131 0.0 0.0412
ENSG00000151164 RAD9B 42206 eQTL 0.0665 0.174 0.0948 0.00153 0.0 0.0412
ENSG00000186298 PPP1CC -199078 pQTL 2.86e-02 0.0739 0.0337 0.00149 0.0 0.0405
ENSG00000196510 ANAPC7 140131 eQTL 0.0297 0.0841 0.0387 0.0 0.0 0.0412
ENSG00000204852 TCTN1 -70166 eQTL 2.20e-04 0.136 0.0367 0.00145 0.0 0.0412

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111237 VPS29 41744 7.7e-06 2.74e-05 1.36e-06 3.69e-06 1.46e-06 1.55e-06 6.08e-05 1.18e-06 5.32e-06 3.09e-06 1.07e-05 6.43e-06 1.12e-05 3.81e-06 2.17e-06 3.72e-06 4.04e-06 4.4e-06 1.39e-06 1.2e-06 2.93e-06 7.56e-06 0.000115 2.56e-06 1.32e-05 1.9e-06 2.23e-06 1.74e-06 4.74e-05 4.28e-06 3.94e-06 1.57e-07 2.8e-07 1.82e-06 1.97e-06 1.46e-06 7.42e-07 3.09e-07 6.98e-07 3.99e-07 1.98e-07 1.58e-05 1.66e-06 7.47e-09 7.32e-07 6.75e-07 7.09e-07 1.69e-07 1.56e-07
ENSG00000277595 \N 511616 3.71e-07 5.67e-07 5.14e-08 2.24e-07 9.02e-08 9.91e-08 6.54e-07 5.49e-08 1.45e-07 4.4e-08 1.66e-07 1.01e-07 2.24e-07 8.26e-08 6.17e-08 7.3e-08 3.98e-08 1.8e-07 5.36e-08 4.03e-08 1.22e-07 1.24e-07 5.21e-07 4.13e-08 2.17e-07 1.14e-07 1.07e-07 9.36e-08 4.13e-07 1.1e-07 1.26e-07 3.29e-08 2.74e-08 8.55e-08 8.76e-08 3.65e-08 5.64e-08 8.75e-08 8.14e-08 3.74e-08 3.18e-08 7.52e-07 5.2e-08 0.0 8.79e-08 1.7e-08 1.45e-07 4.96e-09 4.72e-08