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Genes within 1Mb (chr1:53985890:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -815433 sc-eQTL 1.01e-01 0.334 0.203 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 96092 sc-eQTL 2.50e-01 0.252 0.218 0.05 CD8_TEM L2
ENSG00000058804 NDC1 147427 sc-eQTL 2.10e-01 0.261 0.207 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 39961 sc-eQTL 6.36e-01 0.0935 0.197 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 -67694 sc-eQTL 3.65e-01 0.193 0.213 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 -67614 sc-eQTL 5.06e-01 0.137 0.206 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 39805 sc-eQTL 5.12e-01 0.146 0.222 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 -198151 sc-eQTL 3.71e-02 0.433 0.206 0.05 CD8_TEM L2
ENSG00000157184 CPT2 789098 sc-eQTL 3.21e-01 0.215 0.216 0.05 CD8_TEM L2
ENSG00000157193 LRP8 657421 sc-eQTL 2.08e-01 0.261 0.207 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -427589 sc-eQTL 8.56e-01 0.0359 0.197 0.05 CD8_TEM L2
ENSG00000162383 SLC1A7 843258 sc-eQTL 3.16e-01 0.135 0.134 0.05 CD8_TEM L2
ENSG00000162384 CZIB 765256 sc-eQTL 5.23e-01 -0.142 0.222 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 747372 sc-eQTL 7.09e-01 0.0701 0.188 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -729971 sc-eQTL 5.87e-01 -0.115 0.211 0.05 CD8_TEM L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116209 TMEM59 -67614 eQTL 0.0136 0.0477 0.0193 0.00157 0.0 0.0461
ENSG00000116212 LRRC42 39805 eQTL 0.000737 0.152 0.0448 0.00311 0.00253 0.0461
ENSG00000157216 SSBP3 -427589 eQTL 0.0473 0.0599 0.0301 0.0 0.0 0.0461
ENSG00000162396 PARS2 -778633 eQTL 0.0028 0.181 0.0604 0.00364 0.00179 0.0461
ENSG00000280378 AL353898.3 -48990 eQTL 0.0313 -0.132 0.0612 0.0 0.0 0.0461

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162396 PARS2 -778633 2.76e-07 1.3e-07 4.47e-08 1.82e-07 9.25e-08 9.91e-08 1.6e-07 5.4e-08 1.45e-07 5.42e-08 1.55e-07 9.19e-08 1.53e-07 6.76e-08 6.12e-08 7.36e-08 4.17e-08 1.27e-07 5.75e-08 4.21e-08 1.13e-07 1.24e-07 1.45e-07 2.64e-08 1.5e-07 1.21e-07 1.07e-07 9.74e-08 1.16e-07 1.07e-07 9.92e-08 3.08e-08 3.96e-08 8.23e-08 6.67e-08 3.65e-08 5.29e-08 8.61e-08 6.57e-08 3.86e-08 5.77e-08 1.4e-07 5.2e-08 1.11e-08 3.84e-08 1.84e-08 1.19e-07 3.79e-09 4.94e-08