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Genes within 1Mb (chr1:53983200:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -818123 sc-eQTL 1.01e-01 0.334 0.203 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 93402 sc-eQTL 2.50e-01 0.252 0.218 0.05 CD8_TEM L2
ENSG00000058804 NDC1 144737 sc-eQTL 2.10e-01 0.261 0.207 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 37271 sc-eQTL 6.36e-01 0.0935 0.197 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 -70384 sc-eQTL 3.65e-01 0.193 0.213 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 -70304 sc-eQTL 5.06e-01 0.137 0.206 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 37115 sc-eQTL 5.12e-01 0.146 0.222 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 -200841 sc-eQTL 3.71e-02 0.433 0.206 0.05 CD8_TEM L2
ENSG00000157184 CPT2 786408 sc-eQTL 3.21e-01 0.215 0.216 0.05 CD8_TEM L2
ENSG00000157193 LRP8 654731 sc-eQTL 2.08e-01 0.261 0.207 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -430279 sc-eQTL 8.56e-01 0.0359 0.197 0.05 CD8_TEM L2
ENSG00000162383 SLC1A7 840568 sc-eQTL 3.16e-01 0.135 0.134 0.05 CD8_TEM L2
ENSG00000162384 CZIB 762566 sc-eQTL 5.23e-01 -0.142 0.222 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 744682 sc-eQTL 7.09e-01 0.0701 0.188 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -732661 sc-eQTL 5.87e-01 -0.115 0.211 0.05 CD8_TEM L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116209 TMEM59 -70304 eQTL 0.0136 0.0477 0.0193 0.00157 0.0 0.0461
ENSG00000116212 LRRC42 37115 eQTL 0.000737 0.152 0.0448 0.00311 0.00253 0.0461
ENSG00000157216 SSBP3 -430279 eQTL 0.0473 0.0599 0.0301 0.0 0.0 0.0461
ENSG00000162396 PARS2 -781323 eQTL 0.0028 0.181 0.0604 0.00364 0.00178 0.0461
ENSG00000280378 AL353898.3 -51680 eQTL 0.0313 -0.132 0.0612 0.0 0.0 0.0461

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162396 PARS2 -781323 2.56e-07 1.16e-07 3.41e-08 1.67e-07 1.03e-07 9.14e-08 1.31e-07 5.29e-08 1.33e-07 3.99e-08 1.55e-07 7.49e-08 1.19e-07 6.1e-08 4.48e-08 7.4e-08 5.2e-08 1.02e-07 4.91e-08 2.93e-08 1.04e-07 1.31e-07 1.31e-07 5.19e-08 1.32e-07 1.03e-07 1.12e-07 8.27e-08 1.04e-07 1.08e-07 9.43e-08 3.41e-08 2.75e-08 8.09e-08 9.88e-08 4.26e-08 5.1e-08 8.28e-08 8.44e-08 3.8e-08 3.58e-08 1.43e-07 4.34e-08 0.0 1.12e-07 1.83e-08 1.46e-07 4.82e-09 4.72e-08