Genes within 1Mb (chr1:53944982:T:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -856341 sc-eQTL 1.01e-01 0.334 0.203 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 55184 sc-eQTL 2.50e-01 0.252 0.218 0.05 CD8_TEM L2
ENSG00000058804 NDC1 106519 sc-eQTL 2.10e-01 0.261 0.207 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 -947 sc-eQTL 6.36e-01 0.0935 0.197 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 -108602 sc-eQTL 3.65e-01 0.193 0.213 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 -108522 sc-eQTL 5.06e-01 0.137 0.206 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 -1103 sc-eQTL 5.12e-01 0.146 0.222 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 -239059 sc-eQTL 3.71e-02 0.433 0.206 0.05 CD8_TEM L2
ENSG00000157184 CPT2 748190 sc-eQTL 3.21e-01 0.215 0.216 0.05 CD8_TEM L2
ENSG00000157193 LRP8 616513 sc-eQTL 2.08e-01 0.261 0.207 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -468497 sc-eQTL 8.56e-01 0.0359 0.197 0.05 CD8_TEM L2
ENSG00000162383 SLC1A7 802350 sc-eQTL 3.16e-01 0.135 0.134 0.05 CD8_TEM L2
ENSG00000162384 CZIB 724348 sc-eQTL 5.23e-01 -0.142 0.222 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 706464 sc-eQTL 7.09e-01 0.0701 0.188 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -770879 sc-eQTL 5.87e-01 -0.115 0.211 0.05 CD8_TEM L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116209 TMEM59 -108522 eQTL 0.036 0.0399 0.019 0.0 0.0 0.0491
ENSG00000116212 LRRC42 -1103 eQTL 0.000347 0.158 0.0441 0.00492 0.00493 0.0491
ENSG00000157216 SSBP3 -468497 eQTL 0.0383 0.0616 0.0297 0.0 0.0 0.0491
ENSG00000162396 PARS2 -819541 eQTL 0.00606 0.164 0.0596 0.00235 0.0 0.0491
ENSG00000280378 AL353898.3 -89898 eQTL 0.0162 -0.145 0.0603 0.0 0.0 0.0491


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162396 PARS2 -819541 5.37e-07 6.97e-07 1.27e-07 3.04e-07 1.56e-07 2.63e-07 5.28e-07 1.4e-07 4.61e-07 2.01e-07 8.15e-07 3.08e-07 7.71e-07 1.56e-07 1.9e-07 2.23e-07 5.27e-07 5.02e-07 3.26e-07 1.78e-07 2.42e-07 4.11e-07 3.08e-07 9.63e-08 7.94e-07 2.57e-07 2.94e-07 5.31e-07 2.76e-07 4.27e-07 2.43e-07 6.78e-08 5.78e-08 1.71e-07 3.63e-07 3.36e-07 4.75e-07 6.67e-08 5.77e-08 1.16e-07 5.71e-08 4.68e-07 2.92e-08 1.93e-08 7.89e-08 2.07e-08 1.11e-07 3.25e-09 4.54e-08
ENSG00000243725 \N -770879 6.97e-07 8.69e-07 1.57e-07 4.03e-07 2.33e-07 3.36e-07 6.06e-07 1.78e-07 6.27e-07 2.34e-07 1.03e-06 3.68e-07 9.77e-07 2.14e-07 2.81e-07 2.89e-07 6.44e-07 5.67e-07 4e-07 2.65e-07 2.72e-07 5.18e-07 4e-07 1.27e-07 1.13e-06 2.41e-07 4.16e-07 6.51e-07 3.83e-07 6.03e-07 3.13e-07 7.41e-08 8.37e-08 2.15e-07 3.22e-07 4.47e-07 6.41e-07 8.33e-08 4.44e-08 3.12e-07 5.36e-08 6.19e-07 4.59e-08 2.62e-08 1.01e-07 4.23e-08 1.43e-07 1.2e-08 5.49e-08