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Genes within 1Mb (chr1:52680312:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 801375 sc-eQTL 4.76e-01 0.131 0.183 0.056 PB L2
ENSG00000116157 GPX7 77941 sc-eQTL 2.83e-01 -0.218 0.202 0.056 PB L2
ENSG00000116171 SCP2 -246964 sc-eQTL 2.14e-01 0.219 0.175 0.056 PB L2
ENSG00000117862 TXNDC12 624141 sc-eQTL 6.01e-01 0.0848 0.162 0.056 PB L2
ENSG00000121310 ECHDC2 -246900 sc-eQTL 1.22e-01 -0.404 0.26 0.056 PB L2
ENSG00000134717 BTF3L4 624113 sc-eQTL 7.03e-01 0.1 0.261 0.056 PB L2
ENSG00000134744 TUT4 126825 sc-eQTL 9.37e-01 0.0191 0.24 0.056 PB L2
ENSG00000134748 PRPF38A 275710 sc-eQTL 3.50e-01 0.212 0.226 0.056 PB L2
ENSG00000154222 CC2D1B 314119 sc-eQTL 4.70e-01 -0.18 0.249 0.056 PB L2
ENSG00000157184 CPT2 -516480 sc-eQTL 9.87e-01 0.00368 0.226 0.056 PB L2
ENSG00000157193 LRP8 -648157 sc-eQTL 5.37e-01 0.147 0.238 0.056 PB L2
ENSG00000162377 COA7 -18035 sc-eQTL 3.47e-01 -0.219 0.231 0.056 PB L2
ENSG00000162378 ZYG11B -46141 sc-eQTL 3.24e-02 0.54 0.249 0.056 PB L2
ENSG00000162384 CZIB -540322 sc-eQTL 2.17e-01 -0.307 0.247 0.056 PB L2
ENSG00000162385 MAGOH -558206 sc-eQTL 8.31e-01 0.0493 0.23 0.056 PB L2
ENSG00000182183 SHISAL2A 47144 sc-eQTL 3.50e-01 -0.198 0.21 0.056 PB L2
ENSG00000198841 KTI12 646502 sc-eQTL 3.65e-01 0.216 0.238 0.056 PB L2
ENSG00000230138 LINC02812 -687933 sc-eQTL 3.09e-01 0.188 0.184 0.056 PB L2
ENSG00000078618 NRDC 801375 sc-eQTL 5.78e-01 0.108 0.194 0.051 pDC L2
ENSG00000116157 GPX7 77941 sc-eQTL 2.70e-01 -0.199 0.18 0.051 pDC L2
ENSG00000116171 SCP2 -246964 sc-eQTL 3.44e-01 -0.205 0.216 0.051 pDC L2
ENSG00000117862 TXNDC12 624141 sc-eQTL 2.40e-01 0.274 0.232 0.051 pDC L2
ENSG00000121310 ECHDC2 -246900 sc-eQTL 9.68e-01 -0.00937 0.235 0.051 pDC L2
ENSG00000134717 BTF3L4 624113 sc-eQTL 7.62e-02 -0.404 0.227 0.051 pDC L2
ENSG00000134744 TUT4 126825 sc-eQTL 2.59e-02 -0.431 0.191 0.051 pDC L2
ENSG00000134748 PRPF38A 275710 sc-eQTL 8.79e-01 0.038 0.25 0.051 pDC L2
ENSG00000154222 CC2D1B 314119 sc-eQTL 5.75e-01 -0.134 0.238 0.051 pDC L2
ENSG00000157184 CPT2 -516480 sc-eQTL 7.39e-02 -0.402 0.223 0.051 pDC L2
ENSG00000157193 LRP8 -648157 sc-eQTL 3.01e-01 -0.207 0.199 0.051 pDC L2
ENSG00000162377 COA7 -18035 sc-eQTL 6.83e-01 0.0789 0.193 0.051 pDC L2
ENSG00000162378 ZYG11B -46141 sc-eQTL 6.59e-01 -0.103 0.232 0.051 pDC L2
ENSG00000162384 CZIB -540322 sc-eQTL 3.59e-01 0.214 0.233 0.051 pDC L2
ENSG00000162385 MAGOH -558206 sc-eQTL 3.99e-01 0.177 0.209 0.051 pDC L2
ENSG00000198841 KTI12 646502 sc-eQTL 6.75e-01 -0.0928 0.221 0.051 pDC L2
ENSG00000230138 LINC02812 -687933 sc-eQTL 6.62e-01 0.0703 0.161 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 801375 eQTL 0.00455 0.0505 0.0177 0.0 0.0 0.0496
ENSG00000116157 GPX7 77941 eQTL 5.38e-05 0.229 0.0565 0.0 0.0 0.0496
ENSG00000134744 TUT4 126825 eQTL 6.66e-02 0.0551 0.03 0.00113 0.0 0.0496
ENSG00000162378 ZYG11B -46141 eQTL 4.76e-05 0.182 0.0445 0.0 0.0 0.0496
ENSG00000162383 SLC1A7 -462320 eQTL 0.0322 0.134 0.0625 0.0 0.0 0.0496

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116157 GPX7 77941 5.75e-06 6.21e-06 6.31e-07 3.37e-06 1.66e-06 1.52e-06 8.18e-06 1.24e-06 4.55e-06 3.06e-06 8.01e-06 2.99e-06 9.98e-06 2.24e-06 9.95e-07 4.12e-06 2.92e-06 3.76e-06 1.65e-06 1.68e-06 2.85e-06 6.55e-06 5.05e-06 2.06e-06 8.98e-06 2.34e-06 2.72e-06 1.86e-06 6.26e-06 6.62e-06 3.18e-06 4.73e-07 8.41e-07 2.53e-06 1.97e-06 1.54e-06 1.14e-06 5.42e-07 1.41e-06 7.22e-07 8.22e-07 8.5e-06 6.31e-07 1.64e-07 7.41e-07 9.77e-07 1e-06 7.1e-07 6.01e-07
ENSG00000157193 \N -647758 3.53e-07 1.7e-07 6.45e-08 2.24e-07 1.1e-07 7.75e-08 2.5e-07 5.78e-08 1.86e-07 1.05e-07 1.86e-07 1.52e-07 2.45e-07 8.44e-08 6.93e-08 9.48e-08 5.42e-08 2.04e-07 7.36e-08 6.73e-08 1.27e-07 1.81e-07 1.75e-07 4.07e-08 2.36e-07 1.51e-07 1.31e-07 1.46e-07 1.34e-07 1.29e-07 1.22e-07 4.78e-08 4.16e-08 9.52e-08 5.65e-08 3.43e-08 5.02e-08 7.63e-08 6.45e-08 6.55e-08 4.07e-08 1.63e-07 3.35e-08 1.11e-08 3.71e-08 9.65e-09 7.13e-08 0.0 4.67e-08
ENSG00000162378 ZYG11B -46141 8.64e-06 9.76e-06 1.3e-06 5.03e-06 2.44e-06 4.24e-06 1.07e-05 1.99e-06 9.26e-06 4.97e-06 1.24e-05 5.33e-06 1.5e-05 3.81e-06 2.72e-06 6.41e-06 4.69e-06 7.7e-06 2.54e-06 2.85e-06 5.1e-06 9.34e-06 8.51e-06 3.27e-06 1.39e-05 4.03e-06 4.77e-06 4.08e-06 1.07e-05 9.15e-06 5.43e-06 1.01e-06 1.1e-06 3.37e-06 4.23e-06 2.63e-06 1.91e-06 1.82e-06 2.15e-06 9.97e-07 9.26e-07 1.27e-05 1.35e-06 2.01e-07 8.03e-07 1.76e-06 1.56e-06 7.28e-07 4.6e-07