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Genes within 1Mb (chr1:52212883:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 333946 sc-eQTL 6.89e-01 -0.0965 0.241 0.054 B_Activated L2
ENSG00000085832 EPS15 693617 sc-eQTL 3.52e-01 -0.213 0.228 0.054 B_Activated L2
ENSG00000116157 GPX7 -389488 sc-eQTL 6.15e-01 0.111 0.221 0.054 B_Activated L2
ENSG00000116171 SCP2 -714393 sc-eQTL 1.95e-01 0.27 0.207 0.054 B_Activated L2
ENSG00000117859 OSBPL9 635704 sc-eQTL 3.08e-01 -0.243 0.237 0.054 B_Activated L2
ENSG00000117862 TXNDC12 156712 sc-eQTL 9.61e-01 0.011 0.227 0.054 B_Activated L2
ENSG00000121310 ECHDC2 -714329 sc-eQTL 1.02e-01 -0.382 0.233 0.054 B_Activated L2
ENSG00000123091 RNF11 976610 sc-eQTL 9.96e-01 0.00111 0.215 0.054 B_Activated L2
ENSG00000134717 BTF3L4 156684 sc-eQTL 6.87e-01 -0.0963 0.239 0.054 B_Activated L2
ENSG00000134744 TUT4 -340604 sc-eQTL 5.37e-01 0.137 0.222 0.054 B_Activated L2
ENSG00000134748 PRPF38A -191719 sc-eQTL 4.19e-01 0.182 0.224 0.054 B_Activated L2
ENSG00000154222 CC2D1B -153310 sc-eQTL 3.65e-01 -0.199 0.219 0.054 B_Activated L2
ENSG00000157184 CPT2 -983909 sc-eQTL 7.92e-01 0.0531 0.201 0.054 B_Activated L2
ENSG00000162377 COA7 -485464 sc-eQTL 9.68e-01 0.0074 0.187 0.054 B_Activated L2
ENSG00000162378 ZYG11B -513570 sc-eQTL 5.96e-01 -0.121 0.229 0.054 B_Activated L2
ENSG00000182183 SHISAL2A -420285 sc-eQTL 5.54e-01 -0.119 0.201 0.054 B_Activated L2
ENSG00000198841 KTI12 179073 sc-eQTL 5.96e-01 -0.102 0.192 0.054 B_Activated L2
ENSG00000078618 NRDC 333946 sc-eQTL 2.49e-01 -0.209 0.181 0.052 PB L2
ENSG00000085832 EPS15 693617 sc-eQTL 6.51e-01 -0.118 0.26 0.052 PB L2
ENSG00000116157 GPX7 -389488 sc-eQTL 4.50e-01 -0.153 0.201 0.052 PB L2
ENSG00000116171 SCP2 -714393 sc-eQTL 7.33e-01 0.0598 0.175 0.052 PB L2
ENSG00000117859 OSBPL9 635704 sc-eQTL 4.21e-01 0.175 0.216 0.052 PB L2
ENSG00000117862 TXNDC12 156712 sc-eQTL 1.59e-01 -0.226 0.159 0.052 PB L2
ENSG00000121310 ECHDC2 -714329 sc-eQTL 3.27e-01 0.255 0.259 0.052 PB L2
ENSG00000123091 RNF11 976610 sc-eQTL 7.44e-01 0.0832 0.254 0.052 PB L2
ENSG00000134717 BTF3L4 156684 sc-eQTL 3.07e-01 0.265 0.258 0.052 PB L2
ENSG00000134744 TUT4 -340604 sc-eQTL 4.30e-01 -0.188 0.238 0.052 PB L2
ENSG00000134748 PRPF38A -191719 sc-eQTL 7.83e-01 0.062 0.225 0.052 PB L2
ENSG00000154222 CC2D1B -153310 sc-eQTL 2.42e-01 -0.289 0.246 0.052 PB L2
ENSG00000157184 CPT2 -983909 sc-eQTL 8.21e-01 0.0507 0.224 0.052 PB L2
ENSG00000162377 COA7 -485464 sc-eQTL 7.54e-02 -0.408 0.227 0.052 PB L2
ENSG00000162378 ZYG11B -513570 sc-eQTL 2.89e-01 0.267 0.251 0.052 PB L2
ENSG00000182183 SHISAL2A -420285 sc-eQTL 5.76e-01 -0.117 0.209 0.052 PB L2
ENSG00000198841 KTI12 179073 sc-eQTL 6.27e-01 -0.115 0.237 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000198841 KTI12 179067 eQTL 0.0424 -0.081 0.0399 0.0 0.0 0.0422
ENSG00000232027 AL671986.1 840613 eQTL 0.0248 0.189 0.084 0.00215 0.0 0.0422
ENSG00000232846 SLC25A6P3 503821 eQTL 0.0492 -0.135 0.0687 0.0 0.0 0.0422

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000198841 KTI12 179067 2.74e-06 4.19e-06 8.7e-07 1.69e-06 3.86e-07 8.14e-07 2.33e-06 3.82e-07 1.86e-06 8.25e-07 2.61e-06 1.29e-06 6.61e-06 1.2e-06 1.05e-06 1.52e-06 1.56e-06 2.19e-06 1.46e-06 9.52e-07 1.4e-06 3.03e-06 3.44e-06 8.95e-07 3.53e-06 1.26e-06 9.86e-07 1.26e-06 3.41e-06 1.82e-06 1.97e-06 3.8e-07 4.19e-07 1.22e-06 8.59e-07 8.48e-07 9.13e-07 3.9e-07 1.18e-06 2.98e-07 1.92e-07 6.65e-06 3.98e-07 1.99e-07 3.65e-07 3.13e-07 3.34e-07 1.27e-07 2.13e-07
ENSG00000232027 AL671986.1 840613 2.67e-07 1.19e-07 3.56e-08 1.79e-07 9.65e-08 9.57e-08 1.44e-07 5.21e-08 1.41e-07 4.38e-08 1.62e-07 8.03e-08 1.47e-07 6.38e-08 5.55e-08 7.26e-08 4.48e-08 1.18e-07 5.36e-08 3.89e-08 1.08e-07 1.27e-07 1.34e-07 4.67e-08 1.31e-07 1.19e-07 1.12e-07 8.71e-08 1.03e-07 1.11e-07 9.73e-08 3.84e-08 2.91e-08 8.68e-08 9.24e-08 3.99e-08 4.95e-08 9.44e-08 7.47e-08 3.03e-08 3.55e-08 1.46e-07 4.19e-08 1.55e-08 7.91e-08 1.68e-08 1.25e-07 4.6e-09 4.74e-08
ENSG00000236973 \N 504746 3.71e-07 2.67e-07 7e-08 2.26e-07 9.79e-08 8.75e-08 3.25e-07 5.2e-08 1.75e-07 9.35e-08 2.38e-07 1.11e-07 5.62e-07 8.55e-08 6.2e-08 9.48e-08 5.57e-08 2.56e-07 8.68e-08 5.04e-08 1.39e-07 1.81e-07 2.11e-07 2.87e-08 2.09e-07 1.39e-07 1.17e-07 1.12e-07 1.4e-07 1.58e-07 1.43e-07 3.59e-08 3.46e-08 1.03e-07 3.02e-08 2.68e-08 9.9e-08 8.57e-08 5.27e-08 3.6e-08 4.68e-08 5.44e-07 2.89e-08 1.71e-08 3.41e-08 6.39e-09 1.21e-07 3.83e-09 4.9e-08