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Genes within 1Mb (chr1:51904403:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 25466 sc-eQTL 1.05e-01 0.356 0.219 0.056 B_Activated L2
ENSG00000085832 EPS15 385137 sc-eQTL 6.60e-01 -0.092 0.209 0.056 B_Activated L2
ENSG00000116157 GPX7 -697968 sc-eQTL 8.59e-02 -0.346 0.201 0.056 B_Activated L2
ENSG00000117859 OSBPL9 327224 sc-eQTL 1.88e-01 0.286 0.217 0.056 B_Activated L2
ENSG00000117862 TXNDC12 -151768 sc-eQTL 2.97e-01 0.216 0.207 0.056 B_Activated L2
ENSG00000123080 CDKN2C 943658 sc-eQTL 8.34e-01 -0.0333 0.159 0.056 B_Activated L2
ENSG00000123091 RNF11 668130 sc-eQTL 3.24e-01 0.194 0.196 0.056 B_Activated L2
ENSG00000134717 BTF3L4 -151796 sc-eQTL 5.28e-01 0.138 0.218 0.056 B_Activated L2
ENSG00000134744 TUT4 -649084 sc-eQTL 1.43e-01 0.296 0.202 0.056 B_Activated L2
ENSG00000134748 PRPF38A -500199 sc-eQTL 4.14e-01 0.168 0.205 0.056 B_Activated L2
ENSG00000154222 CC2D1B -461790 sc-eQTL 4.60e-01 0.148 0.2 0.056 B_Activated L2
ENSG00000162377 COA7 -793944 sc-eQTL 2.99e-01 -0.177 0.17 0.056 B_Activated L2
ENSG00000162378 ZYG11B -822050 sc-eQTL 1.29e-01 0.317 0.208 0.056 B_Activated L2
ENSG00000182183 SHISAL2A -728765 sc-eQTL 2.76e-01 0.201 0.184 0.056 B_Activated L2
ENSG00000185104 FAF1 944136 sc-eQTL 4.43e-01 0.152 0.197 0.056 B_Activated L2
ENSG00000198841 KTI12 -129407 sc-eQTL 7.58e-01 0.0541 0.176 0.056 B_Activated L2
ENSG00000078618 NRDC 25466 sc-eQTL 5.48e-01 -0.123 0.204 0.05 CD4_CTL L2
ENSG00000085832 EPS15 385137 sc-eQTL 6.92e-01 -0.0717 0.181 0.05 CD4_CTL L2
ENSG00000116157 GPX7 -697968 sc-eQTL 5.55e-01 -0.118 0.2 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 327224 sc-eQTL 4.39e-01 -0.163 0.21 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -151768 sc-eQTL 8.80e-01 -0.0299 0.197 0.05 CD4_CTL L2
ENSG00000123080 CDKN2C 943658 sc-eQTL 2.51e-01 0.232 0.201 0.05 CD4_CTL L2
ENSG00000123091 RNF11 668130 sc-eQTL 4.45e-01 0.145 0.19 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -151796 sc-eQTL 5.89e-01 0.108 0.2 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -649084 sc-eQTL 3.44e-01 -0.179 0.188 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -500199 sc-eQTL 2.18e-02 -0.458 0.198 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -461790 sc-eQTL 2.63e-01 -0.224 0.199 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -237691 sc-eQTL 5.64e-01 0.106 0.184 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -822050 sc-eQTL 5.19e-01 -0.127 0.197 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A -728765 sc-eQTL 1.52e-01 -0.256 0.178 0.05 CD4_CTL L2
ENSG00000185104 FAF1 944136 sc-eQTL 2.13e-01 0.212 0.17 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -129407 sc-eQTL 9.38e-01 -0.015 0.193 0.05 CD4_CTL L2
ENSG00000078618 NRDC 25466 sc-eQTL 4.37e-01 0.158 0.203 0.051 CD8_TCM L2
ENSG00000085832 EPS15 385137 sc-eQTL 7.73e-01 0.0577 0.2 0.051 CD8_TCM L2
ENSG00000116157 GPX7 -697968 sc-eQTL 6.19e-01 0.107 0.214 0.051 CD8_TCM L2
ENSG00000117859 OSBPL9 327224 sc-eQTL 4.44e-01 0.166 0.217 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 -151768 sc-eQTL 5.51e-01 -0.118 0.197 0.051 CD8_TCM L2
ENSG00000123080 CDKN2C 943658 sc-eQTL 1.92e-02 0.45 0.191 0.051 CD8_TCM L2
ENSG00000123091 RNF11 668130 sc-eQTL 5.70e-01 0.115 0.202 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 -151796 sc-eQTL 5.65e-01 0.116 0.201 0.051 CD8_TCM L2
ENSG00000134744 TUT4 -649084 sc-eQTL 6.43e-01 -0.0916 0.197 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A -500199 sc-eQTL 4.92e-01 0.134 0.195 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B -461790 sc-eQTL 7.39e-01 0.0655 0.197 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 -237691 sc-eQTL 6.22e-01 0.0991 0.201 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -822050 sc-eQTL 3.69e-01 0.177 0.197 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A -728765 sc-eQTL 6.28e-01 0.0941 0.194 0.051 CD8_TCM L2
ENSG00000185104 FAF1 944136 sc-eQTL 5.31e-01 -0.114 0.181 0.051 CD8_TCM L2
ENSG00000198841 KTI12 -129407 sc-eQTL 5.68e-01 -0.118 0.206 0.051 CD8_TCM L2
ENSG00000078618 NRDC 25466 sc-eQTL 2.29e-01 0.257 0.213 0.05 NK_HLA L2
ENSG00000085832 EPS15 385137 sc-eQTL 4.43e-01 0.125 0.162 0.05 NK_HLA L2
ENSG00000116157 GPX7 -697968 sc-eQTL 9.44e-01 0.0143 0.202 0.05 NK_HLA L2
ENSG00000117859 OSBPL9 327224 sc-eQTL 6.20e-01 0.098 0.197 0.05 NK_HLA L2
ENSG00000117862 TXNDC12 -151768 sc-eQTL 8.69e-01 -0.0338 0.205 0.05 NK_HLA L2
ENSG00000123080 CDKN2C 943658 sc-eQTL 4.39e-01 -0.151 0.195 0.05 NK_HLA L2
ENSG00000123091 RNF11 668130 sc-eQTL 1.25e-01 0.295 0.191 0.05 NK_HLA L2
ENSG00000134717 BTF3L4 -151796 sc-eQTL 7.31e-01 -0.0705 0.205 0.05 NK_HLA L2
ENSG00000134744 TUT4 -649084 sc-eQTL 6.81e-01 0.0844 0.205 0.05 NK_HLA L2
ENSG00000134748 PRPF38A -500199 sc-eQTL 2.05e-01 0.262 0.206 0.05 NK_HLA L2
ENSG00000154222 CC2D1B -461790 sc-eQTL 5.33e-01 -0.134 0.214 0.05 NK_HLA L2
ENSG00000162377 COA7 -793944 sc-eQTL 4.56e-01 0.137 0.183 0.05 NK_HLA L2
ENSG00000162378 ZYG11B -822050 sc-eQTL 7.81e-01 -0.0561 0.202 0.05 NK_HLA L2
ENSG00000182183 SHISAL2A -728765 sc-eQTL 7.12e-02 -0.368 0.203 0.05 NK_HLA L2
ENSG00000185104 FAF1 944136 sc-eQTL 9.96e-01 0.000928 0.184 0.05 NK_HLA L2
ENSG00000198841 KTI12 -129407 sc-eQTL 4.72e-01 -0.145 0.201 0.05 NK_HLA L2
ENSG00000078618 NRDC 25466 sc-eQTL 6.46e-01 0.102 0.222 0.052 gdT L2
ENSG00000085832 EPS15 385137 sc-eQTL 4.11e-03 -0.689 0.236 0.052 gdT L2
ENSG00000085840 ORC1 -500020 sc-eQTL 5.18e-01 0.12 0.185 0.052 gdT L2
ENSG00000116157 GPX7 -697968 sc-eQTL 8.08e-01 0.0566 0.232 0.052 gdT L2
ENSG00000117859 OSBPL9 327224 sc-eQTL 2.61e-01 -0.274 0.243 0.052 gdT L2
ENSG00000117862 TXNDC12 -151768 sc-eQTL 4.14e-01 0.193 0.236 0.052 gdT L2
ENSG00000123080 CDKN2C 943658 sc-eQTL 4.05e-01 -0.202 0.241 0.052 gdT L2
ENSG00000123091 RNF11 668130 sc-eQTL 3.14e-02 -0.511 0.235 0.052 gdT L2
ENSG00000134717 BTF3L4 -151796 sc-eQTL 6.49e-01 -0.11 0.241 0.052 gdT L2
ENSG00000134744 TUT4 -649084 sc-eQTL 3.69e-01 -0.223 0.248 0.052 gdT L2
ENSG00000134748 PRPF38A -500199 sc-eQTL 7.96e-01 0.0645 0.249 0.052 gdT L2
ENSG00000154222 CC2D1B -461790 sc-eQTL 9.72e-02 0.371 0.222 0.052 gdT L2
ENSG00000157077 ZFYVE9 -237691 sc-eQTL 2.81e-01 -0.232 0.214 0.052 gdT L2
ENSG00000162377 COA7 -793944 sc-eQTL 2.34e-01 -0.258 0.216 0.052 gdT L2
ENSG00000162378 ZYG11B -822050 sc-eQTL 3.25e-01 -0.232 0.235 0.052 gdT L2
ENSG00000182183 SHISAL2A -728765 sc-eQTL 8.21e-01 -0.0506 0.223 0.052 gdT L2
ENSG00000185104 FAF1 944136 sc-eQTL 6.26e-01 0.114 0.233 0.052 gdT L2
ENSG00000198841 KTI12 -129407 sc-eQTL 4.49e-02 -0.453 0.224 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116157 GPX7 -697968 eQTL 3.83e-05 -0.259 0.0626 0.00529 0.0 0.0393
ENSG00000134717 BTF3L4 -151796 eQTL 1.28e-01 0.0513 0.0337 0.00101 0.0 0.0393
ENSG00000134748 PRPF38A -500199 eQTL 9.00e-03 0.125 0.0477 0.00303 0.0 0.0393
ENSG00000198841 KTI12 -129413 eQTL 0.0473 0.0845 0.0425 0.0 0.0 0.0393
ENSG00000233406 AL162430.1 652931 eQTL 0.0201 0.108 0.0462 0.0 0.0 0.0393

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000123091 \N 668130 3.21e-07 1.59e-07 6.55e-08 2.27e-07 1.07e-07 8.89e-08 2.24e-07 5.84e-08 1.85e-07 1.03e-07 1.86e-07 1.46e-07 2.45e-07 8.15e-08 5.62e-08 9.11e-08 4.63e-08 1.91e-07 7.29e-08 6.03e-08 1.26e-07 1.76e-07 1.68e-07 4.07e-08 2.17e-07 1.43e-07 1.29e-07 1.28e-07 1.37e-07 1.29e-07 1.22e-07 4.69e-08 3.74e-08 9.72e-08 5.41e-08 3.18e-08 4.47e-08 7.63e-08 6.45e-08 6.55e-08 4.78e-08 1.59e-07 4.17e-08 1.43e-08 3.61e-08 6.39e-09 8.67e-08 2.16e-09 4.94e-08