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Genes within 1Mb (chr6:138596956:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000024862 CCDC28A -176553 sc-eQTL 3.24e-01 -0.175 0.177 0.052 DC L1
ENSG00000051620 HEBP2 193425 sc-eQTL 4.10e-01 0.103 0.124 0.052 DC L1
ENSG00000112406 HECA -538124 sc-eQTL 3.04e-01 0.15 0.146 0.052 DC L1
ENSG00000118503 TNFAIP3 729742 sc-eQTL 8.06e-01 -0.0345 0.141 0.052 DC L1
ENSG00000135540 NHSL1 -95615 sc-eQTL 3.23e-01 -0.161 0.162 0.052 DC L1
ENSG00000135597 REPS1 -391305 sc-eQTL 4.59e-01 0.107 0.144 0.052 DC L1
ENSG00000146386 ABRACL -431789 sc-eQTL 1.53e-02 -0.339 0.139 0.052 DC L1
ENSG00000164442 CITED2 -777692 sc-eQTL 6.81e-01 -0.0686 0.167 0.052 DC L1
ENSG00000225177 AL590617.2 -95592 sc-eQTL 6.72e-01 -0.0721 0.17 0.052 DC L1
ENSG00000237499 WAKMAR2 728723 sc-eQTL 8.70e-01 0.0235 0.143 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000024862 CCDC28A -176553 sc-eQTL 5.76e-01 -0.0992 0.177 0.052 CD4_CTL L2
ENSG00000051620 HEBP2 193425 sc-eQTL 7.14e-01 0.0563 0.153 0.052 CD4_CTL L2
ENSG00000112378 PERP 489537 sc-eQTL 1.99e-01 -0.24 0.186 0.052 CD4_CTL L2
ENSG00000112406 HECA -538124 sc-eQTL 3.72e-02 -0.371 0.177 0.052 CD4_CTL L2
ENSG00000118503 TNFAIP3 729742 sc-eQTL 2.66e-01 -0.121 0.109 0.052 CD4_CTL L2
ENSG00000135597 REPS1 -391305 sc-eQTL 9.50e-01 -0.011 0.174 0.052 CD4_CTL L2
ENSG00000146386 ABRACL -431789 sc-eQTL 3.34e-01 -0.153 0.158 0.052 CD4_CTL L2
ENSG00000164442 CITED2 -777692 sc-eQTL 3.99e-01 0.134 0.159 0.052 CD4_CTL L2
ENSG00000231329 AL031772.1 -642697 sc-eQTL 4.82e-01 -0.116 0.164 0.052 CD4_CTL L2
ENSG00000237499 WAKMAR2 728723 sc-eQTL 1.08e-01 0.272 0.168 0.052 CD4_CTL L2
ENSG00000024862 CCDC28A -176553 sc-eQTL 9.00e-01 0.0265 0.211 0.051 CD8_TCM L2
ENSG00000051620 HEBP2 193425 sc-eQTL 8.44e-01 0.0292 0.148 0.051 CD8_TCM L2
ENSG00000112378 PERP 489537 sc-eQTL 4.58e-01 -0.145 0.195 0.051 CD8_TCM L2
ENSG00000112406 HECA -538124 sc-eQTL 2.83e-01 -0.165 0.154 0.051 CD8_TCM L2
ENSG00000118503 TNFAIP3 729742 sc-eQTL 8.31e-01 -0.0201 0.0942 0.051 CD8_TCM L2
ENSG00000135597 REPS1 -391305 sc-eQTL 9.94e-01 0.00116 0.16 0.051 CD8_TCM L2
ENSG00000146386 ABRACL -431789 sc-eQTL 7.65e-01 0.0477 0.16 0.051 CD8_TCM L2
ENSG00000164442 CITED2 -777692 sc-eQTL 7.57e-01 0.0507 0.164 0.051 CD8_TCM L2
ENSG00000231329 AL031772.1 -642697 sc-eQTL 2.09e-01 0.217 0.172 0.051 CD8_TCM L2
ENSG00000237499 WAKMAR2 728723 sc-eQTL 3.08e-02 0.37 0.17 0.051 CD8_TCM L2
ENSG00000024862 CCDC28A -176553 sc-eQTL 9.65e-01 -0.00887 0.199 0.05 NK_HLA L2
ENSG00000051620 HEBP2 193425 sc-eQTL 3.80e-01 -0.149 0.169 0.05 NK_HLA L2
ENSG00000112378 PERP 489537 sc-eQTL 9.11e-01 0.0169 0.151 0.05 NK_HLA L2
ENSG00000112406 HECA -538124 sc-eQTL 8.93e-01 0.025 0.186 0.05 NK_HLA L2
ENSG00000118503 TNFAIP3 729742 sc-eQTL 6.87e-01 0.0468 0.116 0.05 NK_HLA L2
ENSG00000135597 REPS1 -391305 sc-eQTL 3.98e-01 -0.156 0.184 0.05 NK_HLA L2
ENSG00000146386 ABRACL -431789 sc-eQTL 9.75e-01 0.00484 0.151 0.05 NK_HLA L2
ENSG00000164442 CITED2 -777692 sc-eQTL 4.66e-01 -0.118 0.161 0.05 NK_HLA L2
ENSG00000237499 WAKMAR2 728723 sc-eQTL 2.95e-01 0.196 0.187 0.05 NK_HLA L2
ENSG00000024862 CCDC28A -176553 sc-eQTL 5.34e-01 -0.112 0.179 0.054 cDC L2
ENSG00000051620 HEBP2 193425 sc-eQTL 9.38e-02 0.215 0.128 0.054 cDC L2
ENSG00000112406 HECA -538124 sc-eQTL 3.77e-01 0.151 0.17 0.054 cDC L2
ENSG00000118503 TNFAIP3 729742 sc-eQTL 8.29e-01 -0.0311 0.144 0.054 cDC L2
ENSG00000135540 NHSL1 -95615 sc-eQTL 9.34e-01 -0.0138 0.167 0.054 cDC L2
ENSG00000135597 REPS1 -391305 sc-eQTL 9.87e-01 0.00326 0.193 0.054 cDC L2
ENSG00000146386 ABRACL -431789 sc-eQTL 1.30e-02 -0.388 0.155 0.054 cDC L2
ENSG00000164442 CITED2 -777692 sc-eQTL 4.67e-01 -0.122 0.167 0.054 cDC L2
ENSG00000225177 AL590617.2 -95592 sc-eQTL 7.91e-01 -0.0489 0.184 0.054 cDC L2
ENSG00000237499 WAKMAR2 728723 sc-eQTL 9.17e-01 -0.0195 0.188 0.054 cDC L2
ENSG00000024862 CCDC28A -176553 sc-eQTL 5.45e-01 0.138 0.228 0.055 gdT L2
ENSG00000051620 HEBP2 193425 sc-eQTL 2.09e-01 0.273 0.216 0.055 gdT L2
ENSG00000112378 PERP 489537 sc-eQTL 6.43e-01 0.0939 0.202 0.055 gdT L2
ENSG00000112406 HECA -538124 sc-eQTL 8.22e-01 -0.0488 0.217 0.055 gdT L2
ENSG00000118503 TNFAIP3 729742 sc-eQTL 1.75e-01 -0.152 0.112 0.055 gdT L2
ENSG00000135597 REPS1 -391305 sc-eQTL 5.02e-01 0.151 0.224 0.055 gdT L2
ENSG00000146386 ABRACL -431789 sc-eQTL 9.56e-02 -0.28 0.167 0.055 gdT L2
ENSG00000164442 CITED2 -777692 sc-eQTL 7.82e-01 0.0538 0.195 0.055 gdT L2
ENSG00000237499 WAKMAR2 728723 sc-eQTL 7.63e-01 -0.0616 0.204 0.055 gdT L2
ENSG00000024862 CCDC28A -176553 sc-eQTL 6.80e-01 -0.0717 0.174 0.052 ncMono L2
ENSG00000051620 HEBP2 193425 sc-eQTL 7.15e-01 -0.0379 0.104 0.052 ncMono L2
ENSG00000112406 HECA -538124 sc-eQTL 4.39e-01 -0.123 0.158 0.052 ncMono L2
ENSG00000118503 TNFAIP3 729742 sc-eQTL 6.78e-01 0.0543 0.131 0.052 ncMono L2
ENSG00000135540 NHSL1 -95615 sc-eQTL 5.70e-01 0.0948 0.167 0.052 ncMono L2
ENSG00000135597 REPS1 -391305 sc-eQTL 9.87e-01 0.00197 0.126 0.052 ncMono L2
ENSG00000146386 ABRACL -431789 sc-eQTL 9.10e-01 0.0171 0.151 0.052 ncMono L2
ENSG00000164442 CITED2 -777692 sc-eQTL 8.55e-01 -0.0236 0.129 0.052 ncMono L2
ENSG00000225177 AL590617.2 -95592 sc-eQTL 5.42e-01 -0.113 0.185 0.052 ncMono L2
ENSG00000237499 WAKMAR2 728723 sc-eQTL 7.77e-01 -0.0464 0.164 0.052 ncMono L2
ENSG00000024862 CCDC28A -176553 sc-eQTL 3.48e-01 -0.179 0.19 0.059 pDC L2
ENSG00000051620 HEBP2 193425 sc-eQTL 5.86e-01 -0.0807 0.148 0.059 pDC L2
ENSG00000112406 HECA -538124 sc-eQTL 4.74e-01 -0.115 0.161 0.059 pDC L2
ENSG00000118503 TNFAIP3 729742 sc-eQTL 4.33e-01 -0.117 0.149 0.059 pDC L2
ENSG00000135540 NHSL1 -95615 sc-eQTL 2.20e-01 -0.18 0.147 0.059 pDC L2
ENSG00000135597 REPS1 -391305 sc-eQTL 6.42e-01 0.0695 0.149 0.059 pDC L2
ENSG00000146386 ABRACL -431789 sc-eQTL 3.10e-02 -0.349 0.161 0.059 pDC L2
ENSG00000164442 CITED2 -777692 sc-eQTL 9.15e-01 0.0205 0.192 0.059 pDC L2
ENSG00000225177 AL590617.2 -95592 sc-eQTL 9.03e-01 0.0181 0.148 0.059 pDC L2
ENSG00000237499 WAKMAR2 728723 sc-eQTL 6.20e-01 0.0754 0.152 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000135540 NHSL1 -95615 eQTL 6.31e-07 0.286 0.057 0.0 0.0 0.0437
ENSG00000135597 REPS1 -391305 eQTL 0.0423 0.0806 0.0397 0.0 0.0 0.0437
ENSG00000225177 AL590617.2 -95592 eQTL 0.0163 0.171 0.0712 0.0 0.0 0.0437
ENSG00000226571 AL592429.2 -674406 eQTL 3.48e-02 0.166 0.0786 0.00148 0.0 0.0437

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000135540 NHSL1 -95615 5.83e-06 5.49e-06 8.72e-07 3.21e-06 1.35e-06 1.57e-06 7.48e-06 1.01e-06 4.97e-06 2.43e-06 5.99e-06 3.43e-06 7.51e-06 1.99e-06 1.21e-06 3.13e-06 1.92e-06 3.53e-06 1.45e-06 1.2e-06 2.88e-06 4.9e-06 4.6e-06 1.43e-06 8.19e-06 1.81e-06 2.41e-06 1.82e-06 4.73e-06 4.99e-06 2.85e-06 5.25e-07 7.91e-07 1.71e-06 2.05e-06 9.08e-07 8.96e-07 4.6e-07 1.04e-06 3.45e-07 2.79e-07 6.66e-06 4.37e-07 1.89e-07 3.58e-07 6.57e-07 9.89e-07 2.07e-07 3.35e-07