logo

Genes within 1Mb (chr6:137259062:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000027697 IFNGR1 39613 sc-eQTL 5.19e-01 0.115 0.179 0.05 CD4_CTL L2
ENSG00000029363 BCLAF1 969211 sc-eQTL 3.49e-01 -0.149 0.158 0.05 CD4_CTL L2
ENSG00000112357 PEX7 436498 sc-eQTL 4.85e-01 -0.138 0.198 0.05 CD4_CTL L2
ENSG00000112378 PERP -848357 sc-eQTL 9.25e-01 -0.0188 0.201 0.05 CD4_CTL L2
ENSG00000118503 TNFAIP3 -608152 sc-eQTL 9.47e-01 -0.00779 0.117 0.05 CD4_CTL L2
ENSG00000197442 MAP3K5 466585 sc-eQTL 1.67e-01 -0.258 0.186 0.05 CD4_CTL L2
ENSG00000237499 WAKMAR2 -609171 sc-eQTL 6.87e-01 -0.0735 0.182 0.05 CD4_CTL L2
ENSG00000027697 IFNGR1 39613 sc-eQTL 5.05e-01 -0.106 0.158 0.05 NK_HLA L2
ENSG00000029363 BCLAF1 969211 sc-eQTL 7.15e-01 0.0491 0.134 0.05 NK_HLA L2
ENSG00000112357 PEX7 436498 sc-eQTL 6.46e-01 0.0924 0.201 0.05 NK_HLA L2
ENSG00000112378 PERP -848357 sc-eQTL 1.06e-01 0.263 0.162 0.05 NK_HLA L2
ENSG00000118503 TNFAIP3 -608152 sc-eQTL 8.67e-01 -0.0211 0.126 0.05 NK_HLA L2
ENSG00000197442 MAP3K5 466585 sc-eQTL 1.71e-01 -0.273 0.199 0.05 NK_HLA L2
ENSG00000237499 WAKMAR2 -609171 sc-eQTL 6.70e-01 0.0863 0.202 0.05 NK_HLA L2
ENSG00000027697 IFNGR1 39613 sc-eQTL 5.01e-01 0.123 0.183 0.054 pDC L2
ENSG00000029363 BCLAF1 969211 sc-eQTL 5.59e-01 -0.0803 0.137 0.054 pDC L2
ENSG00000112357 PEX7 436498 sc-eQTL 8.70e-02 0.344 0.2 0.054 pDC L2
ENSG00000118503 TNFAIP3 -608152 sc-eQTL 8.31e-01 0.0363 0.17 0.054 pDC L2
ENSG00000135525 MAP7 708243 sc-eQTL 3.93e-01 -0.12 0.14 0.054 pDC L2
ENSG00000197442 MAP3K5 466585 sc-eQTL 6.60e-01 0.0993 0.225 0.054 pDC L2
ENSG00000237499 WAKMAR2 -609171 sc-eQTL 7.73e-01 0.0497 0.172 0.054 pDC L2
ENSG00000286646 AL121933.2 475017 sc-eQTL 5.39e-02 0.399 0.205 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000027697 IFNGR1 39613 eQTL 0.0493 -0.0695 0.0353 0.0 0.0 0.0437
ENSG00000112378 PERP -848357 eQTL 0.0464 -0.137 0.0689 0.00116 0.0 0.0437

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000112378 PERP -848357 2.76e-07 1.3e-07 3.71e-08 2.22e-07 8.83e-08 9.9e-08 1.49e-07 5.2e-08 1.41e-07 4.4e-08 1.54e-07 7.75e-08 1.41e-07 6.56e-08 5.53e-08 7.17e-08 3.94e-08 1.21e-07 5.97e-08 4.3e-08 1.08e-07 1.27e-07 1.45e-07 3.49e-08 1.37e-07 1.14e-07 1.07e-07 9.36e-08 1.05e-07 1.07e-07 9.91e-08 3.54e-08 3.73e-08 8.56e-08 4.92e-08 3.93e-08 4.47e-08 9.23e-08 6.58e-08 5.35e-08 4.69e-08 1.35e-07 4.87e-08 1.24e-08 6.92e-08 1.87e-08 1.23e-07 3.95e-09 4.79e-08