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Genes within 1Mb (chr12:94392530:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT -825216 sc-eQTL 6.23e-01 -0.0972 0.198 0.051 cDC L2
ENSG00000057704 TMCC3 -258027 sc-eQTL 9.99e-01 -0.00034 0.213 0.051 cDC L2
ENSG00000120798 NR2C1 -681098 sc-eQTL 9.29e-03 0.539 0.205 0.051 cDC L2
ENSG00000136040 PLXNC1 243953 sc-eQTL 9.24e-01 0.0178 0.186 0.051 cDC L2
ENSG00000169372 CRADD 715155 sc-eQTL 5.31e-01 -0.129 0.206 0.051 cDC L2
ENSG00000173588 CEP83 -67458 sc-eQTL 8.23e-02 -0.302 0.173 0.051 cDC L2
ENSG00000177889 UBE2N 950583 sc-eQTL 1.97e-01 0.234 0.181 0.051 cDC L2
ENSG00000180263 FGD6 -824952 sc-eQTL 4.82e-01 -0.141 0.2 0.051 cDC L2
ENSG00000184752 NDUFA12 -611218 sc-eQTL 5.83e-01 -0.0936 0.17 0.051 cDC L2
ENSG00000198015 MRPL42 925042 sc-eQTL 8.70e-01 -0.0342 0.208 0.051 cDC L2
ENSG00000028203 VEZT -825216 sc-eQTL 3.95e-01 -0.219 0.257 0.052 gdT L2
ENSG00000057704 TMCC3 -258027 sc-eQTL 3.39e-01 -0.188 0.196 0.052 gdT L2
ENSG00000120798 NR2C1 -681098 sc-eQTL 4.01e-01 -0.22 0.261 0.052 gdT L2
ENSG00000120833 SOCS2 822716 sc-eQTL 5.37e-02 -0.455 0.234 0.052 gdT L2
ENSG00000136040 PLXNC1 243953 sc-eQTL 9.67e-01 0.0103 0.248 0.052 gdT L2
ENSG00000169372 CRADD 715155 sc-eQTL 4.56e-01 0.182 0.243 0.052 gdT L2
ENSG00000173588 CEP83 -67458 sc-eQTL 4.78e-01 -0.172 0.242 0.052 gdT L2
ENSG00000177889 UBE2N 950583 sc-eQTL 2.96e-01 -0.265 0.252 0.052 gdT L2
ENSG00000184752 NDUFA12 -611218 sc-eQTL 8.07e-01 0.0515 0.211 0.052 gdT L2
ENSG00000198015 MRPL42 925042 sc-eQTL 1.91e-01 -0.323 0.245 0.052 gdT L2
ENSG00000028203 VEZT -825216 sc-eQTL 3.29e-01 -0.21 0.214 0.054 pDC L2
ENSG00000057704 TMCC3 -258027 sc-eQTL 1.86e-02 -0.49 0.206 0.054 pDC L2
ENSG00000120798 NR2C1 -681098 sc-eQTL 2.98e-02 -0.469 0.214 0.054 pDC L2
ENSG00000136040 PLXNC1 243953 sc-eQTL 8.85e-02 0.354 0.207 0.054 pDC L2
ENSG00000169372 CRADD 715155 sc-eQTL 6.58e-01 0.0935 0.211 0.054 pDC L2
ENSG00000173588 CEP83 -67458 sc-eQTL 4.19e-01 0.182 0.224 0.054 pDC L2
ENSG00000177889 UBE2N 950583 sc-eQTL 5.69e-02 0.408 0.213 0.054 pDC L2
ENSG00000180263 FGD6 -824952 sc-eQTL 7.26e-01 0.0663 0.189 0.054 pDC L2
ENSG00000184752 NDUFA12 -611218 sc-eQTL 7.82e-01 -0.0516 0.186 0.054 pDC L2
ENSG00000198015 MRPL42 925042 sc-eQTL 8.11e-01 0.0532 0.223 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000169372 CRADD 715155 eQTL 0.0144 0.0917 0.0374 0.00165 0.0 0.0358
ENSG00000173588 CEP83 -67458 eQTL 0.0394 -0.141 0.0685 0.0 0.0 0.0358
ENSG00000246985 SOCS2-AS1 820762 eQTL 0.0166 -0.181 0.0753 0.0 0.0 0.0358
ENSG00000258365 AC073655.2 109686 eQTL 0.454 -0.0687 0.0918 0.00141 0.0 0.0358

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000246985 SOCS2-AS1 820762 2.91e-07 1.33e-07 6.45e-08 2.07e-07 1.01e-07 8.63e-08 1.73e-07 5.56e-08 1.5e-07 7.6e-08 1.73e-07 1.2e-07 1.79e-07 7.95e-08 5.36e-08 7.89e-08 4.18e-08 1.64e-07 7.09e-08 6.16e-08 1.18e-07 1.31e-07 1.58e-07 3.22e-08 1.65e-07 1.31e-07 1.2e-07 1.12e-07 1.31e-07 1.07e-07 1.06e-07 5.38e-08 3.74e-08 9.76e-08 3.97e-08 3.24e-08 4.43e-08 5.92e-08 6.62e-08 5.96e-08 5.94e-08 1.46e-07 3.08e-08 1.1e-08 4e-08 9.44e-09 7.83e-08 0.0 4.97e-08