JOB

SOCS2-AS1(ENSG00000246985)

View on Pheweb.jp , UCSC , GWAS Catalog , GTEx , gnomAD

Statistical fine-mapping results from Japan COVID-19 Task Force

(Shown only for PIP>0.001)

qtl plot

Variant ID	rs ID	TSS Distance	Category	P-value	Effect Size	Effect Size (se)	PIP (FINEMAP)	MAF
chr12:93565120:C:T	rs557390359	-6648	eQTL	1.06e-02	-0.296	0.115	0.0	0.0137
chr12:93587711:C:T	\N	15943	eQTL	3.91e-02	-0.398	0.193	0.0	0.0054
chr12:93553917:G:A	rs7315182	-17851	eQTL	1.60e-02	0.0705	0.0292	0.0	0.31
chr12:93553673:T:C	rs7300306	-18095	eQTL	1.51e-02	0.0712	0.0292	0.0	0.308
chr12:93553343:G:A	rs7314509	-18425	eQTL	1.64e-02	0.0703	0.0293	0.0	0.307
chr12:93551229:C:T	rs10859522	-20539	eQTL	7.58e-03	0.0783	0.0293	0.00121	0.308
chr12:93550567:C:T	rs4761729	-21201	eQTL	8.23e-03	0.0776	0.0293	0.00113	0.307
chr12:93550181:C:T	rs10859518	-21587	eQTL	1.06e-02	0.0746	0.0291	0.0	0.309
chr12:93548493:T:A	\N	-23275	eQTL	4.78e-02	-0.492	0.248	0.0	0.00343
chr12:93544714:T:C	rs10859516	-27054	eQTL	1.22e-02	0.0755	0.0301	0.0	0.257
chr12:93544113:A:G	rs73369686	-27655	eQTL	1.65e-02	0.0844	0.0352	0.0	0.173
chr12:93543445:A:G	rs7139113	-28323	eQTL	1.22e-02	0.0755	0.0301	0.0	0.257
chr12:93538379:G:T	rs7968201	-33389	eQTL	5.72e-03	0.0963	0.0348	0.0015	0.178
chr12:93536171:A:G	rs11107078	-35597	eQTL	2.30e-02	0.0704	0.0309	0.0	0.254
chr12:93607710:C:T	\N	35942	eQTL	4.56e-02	0.512	0.256	0.0	0.00343
chr12:93611906:G:A	rs12318214	40138	eQTL	3.98e-02	0.0597	0.029	0.0	0.299
chr12:93612658:T:C	rs11107127	40890	eQTL	4.09e-02	0.0576	0.0281	0.0	0.334
chr12:93530733:G:A	rs11107072	-41035	eQTL	8.01e-04	-0.103	0.0307	0.00845	0.301
chr12:93530720:A:G	rs11107071	-41048	eQTL	7.56e-04	-0.104	0.0308	0.00895	0.302
chr12:93530634:C:T	rs12422642	-41134	eQTL	1.11e-03	-0.1	0.0307	0.0062	0.301
chr12:93530500:T:G	rs10859513	-41268	eQTL	3.90e-03	-0.0878	0.0303	0.00204	0.311
chr12:93525136:T:C	\N	-46632	eQTL	2.82e-02	0.435	0.198	0.0	0.00491
chr12:93525133:T:C	rs7316104	-46635	eQTL	7.31e-03	-0.0923	0.0343	0.00122	0.197
chr12:93518512:G:A	rs4371017	-53256	eQTL	1.08e-02	-0.0871	0.0341	0.0	0.197
chr12:93517944:G:A	rs112511384	-53824	eQTL	1.58e-02	-0.0815	0.0337	0.0	0.2
chr12:93626037:A:C	rs75770028	54269	eQTL	1.73e-02	-0.149	0.0624	0.0	0.0481
chr12:93517052:A:G	rs10859501	-54716	eQTL	1.81e-02	-0.0853	0.036	0.0	0.168
chr12:93515649:A:G	rs7301435	-56119	eQTL	1.74e-02	-0.08	0.0336	0.0	0.2
chr12:93515615:C:T	rs7301440	-56153	eQTL	1.39e-02	-0.0829	0.0337	0.0	0.2
chr12:93509272:A:G	rs61934354	-62496	eQTL	1.68e-02	-0.0804	0.0336	0.0	0.201
chr12:93505352:T:A	rs7962621	-66416	eQTL	1.72e-02	-0.0802	0.0336	0.0	0.2
chr12:93505300:A:G	rs7975732	-66468	eQTL	1.72e-02	-0.0802	0.0336	0.0	0.2
chr12:93503118:G:A	rs4761728	-68650	eQTL	1.42e-02	-0.0827	0.0337	0.0	0.2
chr12:93501224:C:T	\N	-70544	eQTL	1.78e-02	0.665	0.28	0.0	0.00245
chr12:93643711:A:C	rs150297494	71943	eQTL	4.93e-02	-0.144	0.073	0.0	0.0358
chr12:93646741:A:G	\N	74973	eQTL	1.49e-02	0.412	0.169	0.0	0.00638
chr12:93489944:T:C	rs10859500	-81824	eQTL	1.72e-02	-0.0801	0.0336	0.0	0.201
chr12:93653734:G:A	rs147459578	81966	eQTL	3.84e-02	0.22	0.106	0.0	0.0167
chr12:93488237:T:C	rs61934324	-83531	eQTL	1.71e-02	-0.0801	0.0335	0.0	0.201
chr12:93487798:C:CT	\N	-83970	eQTL	1.71e-02	-0.0801	0.0335	0.0	0.201
chr12:93655848:C:T	\N	84080	eQTL	4.27e-02	0.125	0.0615	0.0	0.0481
chr12:93656941:T:C	\N	85173	eQTL	4.15e-02	0.126	0.0617	0.0	0.0481
chr12:93658544:T:C	\N	86776	eQTL	4.47e-02	0.544	0.271	0.0	0.00294
chr12:93658843:A:T	rs56376753	87075	eQTL	4.99e-02	0.103	0.0527	0.0	0.0687
chr12:93659148:C:G	rs79362741	87380	eQTL	4.99e-02	0.103	0.0527	0.0	0.0687
chr12:93659481:A:G	rs76459527	87713	eQTL	1.45e-02	-0.153	0.0624	0.0	0.0505
chr12:93660012:A:T	rs56227554	88244	eQTL	4.99e-02	0.103	0.0527	0.0	0.0687
chr12:93660272:G:T	rs56378116	88504	eQTL	4.99e-02	0.103	0.0527	0.0	0.0687
chr12:93660499:G:A	rs59663042	88731	eQTL	4.15e-02	0.125	0.0615	0.0	0.0486
chr12:93660500:C:T	\N	88732	eQTL	4.16e-02	0.126	0.0617	0.0	0.0481
chr12:93660535:C:T	\N	88767	eQTL	4.18e-02	0.126	0.0617	0.0	0.0481
chr12:93482121:A:G	rs12424247	-89647	eQTL	1.71e-02	-0.0801	0.0335	0.0	0.201
chr12:93481676:C:G	rs10859496	-90092	eQTL	1.71e-02	-0.0801	0.0335	0.0	0.201
chr12:93662977:G:A	\N	91209	eQTL	4.46e-02	0.303	0.151	0.0	0.00834
chr12:93479150:T:G	rs11107044	-92618	eQTL	1.71e-02	-0.0801	0.0335	0.0	0.201
chr12:93478686:G:A	rs9943803	-93082	eQTL	1.71e-02	-0.0801	0.0335	0.0	0.201
chr12:93477806:G:A	\N	-93962	eQTL	8.65e-05	-1.51	0.383	0.0599	0.00147
chr12:93477731:T:C	\N	-94037	eQTL	1.95e-02	0.408	0.174	0.0	0.00687
chr12:93475754:G:A	rs61934321	-96014	eQTL	2.70e-02	-0.0797	0.036	0.0	0.168
chr12:93474340:A:G	rs12371758	-97428	eQTL	2.24e-02	-0.0822	0.0359	0.0	0.168
chr12:93471985:A:G	rs61934319	-99783	eQTL	2.24e-02	-0.0822	0.0359	0.0	0.168
chr12:93469394:C:G	rs4761722	-102374	eQTL	2.28e-02	-0.0819	0.0359	0.0	0.168
chr12:93469213:G:A	rs4761720	-102555	eQTL	2.20e-02	-0.082	0.0358	0.0	0.168
chr12:93468678:C:T	rs12423753	-103090	eQTL	2.24e-02	-0.0822	0.0359	0.0	0.168
chr12:93467395:T:A	rs10859493	-104373	eQTL	2.24e-02	-0.0822	0.0359	0.0	0.168
chr12:93676655:C:A	\N	104887	eQTL	3.42e-02	-0.639	0.301	0.0	0.00196
chr12:93466315:C:T	rs10777513	-105453	eQTL	3.67e-02	-0.076	0.0363	0.0	0.166
chr12:93464577:T:G	rs10777511	-107191	eQTL	2.66e-02	-0.0799	0.036	0.0	0.168
chr12:93681695:G:A	\N	109927	eQTL	1.62e-03	-1.08	0.343	0.00452	0.00147
chr12:93461797:A:AT	rs34610965	-109971	eQTL	3.79e-02	-0.0751	0.0361	0.0	0.167
chr12:93454471:CATT:C	\N	-117297	eQTL	4.81e-03	-0.675	0.239	0.00172	0.00343
chr12:93451596:A:G	rs151304593	-120172	eQTL	1.94e-02	0.145	0.062	0.0	0.052
chr12:93693866:C:G	\N	122098	eQTL	1.23e-02	-0.24	0.0955	0.0	0.0221
chr12:93447934:A:G	\N	-123834	eQTL	1.43e-02	0.747	0.304	0.0	0.00245
chr12:93446207:G:T	rs74685586	-125561	eQTL	4.51e-02	-0.143	0.0712	0.0	0.0378
chr12:93701947:C:CCTCATCT	\N	130179	eQTL	1.62e-03	-1.08	0.343	0.00452	0.00147
chr12:93708023:A:G	\N	136255	eQTL	2.08e-02	0.803	0.347	0.0	0.00147
chr12:93709143:A:C	\N	137375	eQTL	1.21e-02	0.424	0.169	0.0	0.00638
chr12:93424900:G:C	\N	-146868	eQTL	3.17e-02	0.587	0.273	0.0	0.00245
chr12:93423166:T:C	\N	-148602	eQTL	6.54e-03	-0.637	0.234	0.00134	0.00343
chr12:93721950:T:G	\N	150182	eQTL	2.75e-02	-0.455	0.206	0.0	0.00491
chr12:93416938:T:C	\N	-154830	eQTL	7.00e-03	-0.63	0.233	0.00128	0.00343
chr12:93408088:G:A	\N	-163680	eQTL	2.72e-02	0.767	0.347	0.0	0.00147
chr12:93407703:A:G	\N	-164065	eQTL	1.38e-02	0.44	0.178	0.0	0.00638
chr12:93404376:G:C	\N	-167392	eQTL	6.29e-03	0.4	0.146	0.0014	0.00834
chr12:93400222:T:C	\N	-171546	eQTL	7.39e-03	-0.748	0.279	0.00122	0.00245
chr12:93758594:T:G	rs1493849	186826	eQTL	2.91e-02	-0.0614	0.0281	0.0	0.395
chr12:93759028:T:C	rs1493848	187260	eQTL	3.52e-02	-0.0593	0.0281	0.0	0.395
chr12:93763705:T:C	rs10777542	191937	eQTL	3.38e-02	-0.0597	0.0281	0.0	0.394
chr12:93769687:C:G	rs11107176	197919	eQTL	3.87e-02	-0.0577	0.0279	0.0	0.397
chr12:93373812:C:G	\N	-197956	eQTL	3.31e-02	0.306	0.144	0.0	0.0103
chr12:93372496:T:A	\N	-199272	eQTL	1.55e-02	-0.846	0.349	0.0	0.00147
chr12:93775150:G:A	rs2363081	203382	eQTL	4.51e-02	-0.0562	0.028	0.0	0.383
chr12:93368028:G:A	\N	-203740	eQTL	2.62e-02	0.361	0.162	0.0	0.00785
chr12:93783044:T:C	\N	211276	eQTL	2.00e-03	-1.06	0.342	0.00372	0.00147
chr12:93798288:G:A	\N	226520	eQTL	2.00e-03	-1.06	0.342	0.00371	0.00147
chr12:93799013:G:T	\N	227245	eQTL	4.55e-02	-0.56	0.28	0.0	0.00245
chr12:93342237:T:C	\N	-229531	eQTL	3.91e-02	-0.56	0.271	0.0	0.00294
chr12:93339492:C:G	\N	-232276	eQTL	3.25e-02	0.362	0.169	0.0	0.00638
chr12:93806810:A:G	\N	235042	eQTL	3.64e-02	0.811	0.387	0.0	0.00196
chr12:93808908:T:A	rs143670168	237140	eQTL	1.49e-02	0.274	0.112	0.0	0.0152
chr12:93330471:A:T	rs565095214	-241297	eQTL	2.01e-02	-0.327	0.14	0.0	0.00932
chr12:93814283:G:A	rs117895281	242515	eQTL	4.88e-02	0.242	0.123	0.0	0.0123
chr12:93324944:T:G	\N	-246824	eQTL	3.04e-02	-0.859	0.396	0.0	0.00147
chr12:93324354:T:C	\N	-247414	eQTL	3.48e-02	-0.671	0.317	0.0	0.00196
chr12:93819363:GTAT:G	rs144587930	247595	eQTL	3.80e-02	0.157	0.0754	0.0	0.0343
chr12:93823753:G:A	rs118122405	251985	eQTL	2.14e-02	0.182	0.0789	0.0	0.0304
chr12:93825124:G:A	rs76975379	253356	eQTL	1.96e-02	0.183	0.0783	0.0	0.0309
chr12:93315333:G:A	\N	-256435	eQTL	1.30e-02	0.707	0.284	0.0	0.00294
chr12:93828846:G:T	\N	257078	eQTL	1.96e-02	0.182	0.0778	0.0	0.0304
chr12:93829689:T:TTTG	\N	257921	eQTL	1.82e-02	0.182	0.0771	0.0	0.0314
chr12:93313393:G:A	rs10735316	-258375	eQTL	3.25e-02	0.0589	0.0275	0.0	0.369
chr12:93832315:G:T	\N	260547	eQTL	2.13e-02	0.179	0.0777	0.0	0.0304
chr12:93832325:T:G	\N	260557	eQTL	1.95e-02	0.182	0.0778	0.0	0.0304
chr12:93832552:CTT:C	\N	260784	eQTL	1.95e-02	0.182	0.0778	0.0	0.0304
chr12:93832772:G:A	\N	261004	eQTL	1.95e-02	0.182	0.0778	0.0	0.0304
chr12:93833089:G:A	rs540773329	261321	eQTL	4.19e-02	0.233	0.114	0.0	0.0137
chr12:93835067:C:A	\N	263299	eQTL	5.46e-03	0.579	0.208	0.00157	0.00442
chr12:93835598:A:G	rs191813655	263830	eQTL	2.05e-02	0.347	0.149	0.0	0.00736
chr12:93835980:T:C	\N	264212	eQTL	1.87e-02	0.182	0.0771	0.0	0.0309
chr12:93836047:G:A	\N	264279	eQTL	1.85e-02	0.182	0.077	0.0	0.0309
chr12:93837563:G:GTT	rs57250118	265795	eQTL	1.57e-02	-0.0649	0.0268	0.0	0.454
chr12:93837682:T:C	rs11832760	265914	eQTL	1.34e-02	-0.066	0.0266	0.0	0.459
chr12:93837755:G:A	\N	265987	eQTL	1.82e-02	0.182	0.0771	0.0	0.0309
chr12:93838442:G:A	\N	266674	eQTL	2.47e-02	-0.0912	0.0405	0.0	0.126
chr12:93839346:A:G	\N	267578	eQTL	1.82e-02	0.182	0.0771	0.0	0.0309
chr12:93840749:G:A	\N	268981	eQTL	2.68e-02	0.17	0.0766	0.0	0.0319
chr12:93841701:A:G	\N	269933	eQTL	1.61e-02	0.186	0.0773	0.0	0.0309
chr12:93841839:T:C	\N	270071	eQTL	1.61e-02	0.186	0.0773	0.0	0.0309
chr12:93841877:A:G	\N	270109	eQTL	2.77e-02	0.169	0.0768	0.0	0.0314
chr12:93299685:C:T	rs6419366	-272083	eQTL	3.76e-02	0.0567	0.0272	0.0	0.371
chr12:93844237:C:T	\N	272469	eQTL	6.72e-03	0.796	0.293	0.00134	0.00196
chr12:93299158:G:A	rs7488386	-272610	eQTL	2.91e-02	0.0599	0.0274	0.0	0.373
chr12:93845380:G:A	\N	273612	eQTL	2.32e-02	0.171	0.0754	0.0	0.0324
chr12:93295684:T:C	\N	-276084	eQTL	2.05e-02	-0.701	0.302	0.0	0.00196
chr12:93851938:A:G	rs7302224	280170	eQTL	2.45e-02	-0.0673	0.0299	0.0	0.287
chr12:93856011:C:T	rs7296761	284243	eQTL	4.19e-02	-0.0594	0.0291	0.0	0.357
chr12:93286072:A:C	\N	-285696	eQTL	1.84e-02	0.886	0.375	0.0	0.00147
chr12:93859235:G:A	\N	287467	eQTL	3.20e-02	0.675	0.314	0.0	0.00196
chr12:93863230:GAC:G	\N	291462	eQTL	3.82e-02	0.163	0.0788	0.0	0.0299
chr12:93864420:T:C	\N	292652	eQTL	2.28e-02	-0.0698	0.0306	0.0	0.291
chr12:93864450:G:C	\N	292682	eQTL	1.42e-02	-0.0758	0.0309	0.0	0.288
chr12:93864453:C:T	\N	292685	eQTL	1.42e-02	-0.0758	0.0309	0.0	0.288
chr12:93864950:T:C	\N	293182	eQTL	1.39e-02	-0.076	0.0308	0.0	0.288
chr12:93865154:G:A	rs1493855	293386	eQTL	6.97e-03	-0.0789	0.0292	0.00129	0.361
chr12:93865267:T:A	rs1493854	293499	eQTL	7.25e-03	-0.0784	0.0291	0.00125	0.362
chr12:93865996:T:C	rs4761747	294228	eQTL	2.63e-02	-0.0622	0.028	0.0	0.467
chr12:93866402:T:C	\N	294634	eQTL	2.25e-02	-0.0699	0.0306	0.0	0.291
chr12:93871829:T:G	\N	300061	eQTL	2.02e-02	-0.0709	0.0305	0.0	0.291
chr12:93271535:G:A	rs117777023	-300233	eQTL	2.40e-02	-0.128	0.0565	0.0	0.0716
chr12:93873239:G:GA	\N	301471	eQTL	2.03e-02	-0.0708	0.0305	0.0	0.291
chr12:93873551:A:G	\N	301783	eQTL	8.80e-03	-0.0786	0.0299	0.00106	0.302
chr12:93873605:G:A	\N	301837	eQTL	3.27e-02	-0.419	0.196	0.0	0.00491
chr12:93875251:G:GT	\N	303483	eQTL	1.36e-02	-0.0749	0.0303	0.0	0.295
chr12:93875431:T:C	\N	303663	eQTL	1.76e-02	-0.0722	0.0304	0.0	0.29
chr12:93875691:C:A	\N	303923	eQTL	6.57e-03	-0.0812	0.0298	0.00133	0.303
chr12:93875896:A:G	\N	304128	eQTL	1.76e-02	-0.0722	0.0304	0.0	0.29
chr12:93876198:C:T	\N	304430	eQTL	1.76e-02	-0.0722	0.0304	0.0	0.29
chr12:93267234:C:T	\N	-304534	eQTL	2.17e-02	-0.424	0.185	0.0	0.00638
chr12:93877041:AGTAACACT:A	\N	305273	eQTL	1.86e-02	-0.0716	0.0304	0.0	0.29
chr12:93877499:T:C	rs1493853	305731	eQTL	3.98e-03	-0.0824	0.0286	0.00205	0.377
chr12:93877572:C:T	\N	305804	eQTL	1.76e-02	-0.0722	0.0304	0.0	0.29
chr12:93878467:T:C	\N	306699	eQTL	5.86e-03	-0.0826	0.0299	0.00147	0.304
chr12:93878675:T:C	\N	306907	eQTL	6.58e-03	-0.0815	0.0299	0.00133	0.303
chr12:93878804:A:G	\N	307036	eQTL	1.75e-02	-0.0723	0.0304	0.0	0.29
chr12:93881242:T:A	rs12578141	309474	eQTL	2.74e-02	0.0819	0.0371	0.0	0.163
chr12:93254348:ACTT:A	\N	-317420	eQTL	1.50e-02	-0.454	0.186	0.0	0.00589
chr12:93246252:T:A	\N	-325516	eQTL	4.00e-02	-0.397	0.193	0.0	0.00491
chr12:93244761:A:T	\N	-327007	eQTL	4.04e-02	-0.552	0.269	0.0	0.00245
chr12:93244755:CT:C	\N	-327013	eQTL	4.04e-02	-0.552	0.269	0.0	0.00245
chr12:93906658:C:T	\N	334890	eQTL	4.78e-02	0.709	0.358	0.0	0.00147
chr12:93234329:T:C	\N	-337439	eQTL	4.98e-03	0.534	0.19	0.0017	0.00491
chr12:93911802:C:A	\N	340034	eQTL	1.83e-02	0.586	0.248	0.0	0.00294
chr12:93214017:T:G	\N	-357751	eQTL	1.10e-02	-0.475	0.186	0.0	0.00589
chr12:93209778:A:G	\N	-361990	eQTL	1.10e-02	-0.475	0.186	0.0	0.00589
chr12:93207401:G:T	\N	-364367	eQTL	4.33e-02	0.582	0.287	0.0	0.00245
chr12:93936196:T:C	\N	364428	eQTL	4.63e-02	0.279	0.14	0.0	0.0103
chr12:93187328:G:A	\N	-384440	eQTL	3.60e-02	-0.205	0.0978	0.0	0.0196
chr12:93187043:C:A	\N	-384725	eQTL	4.81e-02	-0.564	0.285	0.0	0.00245
chr12:93186985:G:A	\N	-384783	eQTL	4.86e-02	-0.563	0.285	0.0	0.00245
chr12:93186408:G:A	rs139433201	-385360	eQTL	4.96e-02	0.159	0.0808	0.0	0.028
chr12:93177815:C:G	\N	-393953	eQTL	3.57e-02	0.572	0.272	0.0	0.00245
chr12:93163692:T:G	\N	-408076	eQTL	4.51e-02	-0.536	0.267	0.0	0.00245
chr12:93163373:A:T	\N	-408395	eQTL	2.87e-03	-0.446	0.149	0.00277	0.00883
chr12:93980465:T:TATACTAAA	\N	408697	eQTL	2.25e-02	0.739	0.323	0.0	0.00196
chr12:93160600:A:AT	\N	-411168	eQTL	3.32e-02	-0.75	0.352	0.0	0.00147
chr12:93990279:G:C	\N	418511	eQTL	4.54e-02	0.447	0.223	0.0	0.00393
chr12:93992478:C:A	\N	420710	eQTL	1.85e-02	-0.918	0.389	0.0	0.00147
chr12:93135173:C:G	\N	-436595	eQTL	4.28e-02	-0.662	0.326	0.0	0.00196
chr12:93134792:G:A	\N	-436976	eQTL	4.42e-02	0.536	0.266	0.0	0.00245
chr12:93126017:G:A	\N	-445751	eQTL	2.15e-02	-0.647	0.281	0.0	0.00294
chr12:94027385:C:T	\N	455617	eQTL	3.28e-02	-0.76	0.356	0.0	0.00147
chr12:94027914:C:T	\N	456146	eQTL	1.02e-02	0.346	0.134	0.0	0.0113
chr12:93113361:T:C	\N	-458407	eQTL	3.42e-02	-0.739	0.349	0.0	0.00147
chr12:93111671:C:T	\N	-460097	eQTL	3.10e-02	-0.755	0.349	0.0	0.00147
chr12:93108630:C:CT	\N	-463138	eQTL	3.10e-02	-0.755	0.349	0.0	0.00147
chr12:93108524:T:C	rs12580529	-463244	eQTL	4.40e-02	0.145	0.0717	0.0	0.0378
chr12:93098825:G:A	\N	-472943	eQTL	3.48e-02	-0.643	0.304	0.0	0.00196
chr12:93098543:A:G	rs141056612	-473225	eQTL	1.93e-02	0.28	0.119	0.0	0.0147
chr12:94048831:C:T	\N	477063	eQTL	3.16e-02	-0.605	0.281	0.0	0.00245
chr12:94051799:A:G	\N	480031	eQTL	3.31e-03	0.356	0.121	0.00241	0.0137
chr12:94053592:C:G	\N	481824	eQTL	4.61e-02	0.696	0.348	0.0	0.00147
chr12:94061600:C:T	\N	489832	eQTL	2.30e-02	0.586	0.257	0.0	0.00245
chr12:94066065:C:T	\N	494297	eQTL	1.44e-02	-0.749	0.306	0.0	0.00196
chr12:94073321:T:C	rs142236571	501553	eQTL	2.95e-02	-0.229	0.105	0.0	0.0196
chr12:93057350:C:T	\N	-514418	eQTL	3.71e-02	0.315	0.151	0.0	0.00834
chr12:94088714:T:TA	\N	516946	eQTL	1.90e-02	0.814	0.347	0.0	0.00196
chr12:94094011:T:C	\N	522243	eQTL	4.48e-02	-0.571	0.284	0.0	0.00245
chr12:94096036:G:C	\N	524268	eQTL	2.02e-02	0.59	0.254	0.0	0.00294
chr12:94098274:G:A	\N	526506	eQTL	2.03e-02	-0.668	0.287	0.0	0.00196
chr12:93041807:G:GA	\N	-529961	eQTL	1.78e-02	-0.837	0.353	0.0	0.00196
chr12:93036694:A:G	\N	-535074	eQTL	7.64e-03	-0.961	0.359	0.00122	0.00196
chr12:94115480:G:A	\N	543712	eQTL	1.79e-02	-0.644	0.271	0.0	0.00245
chr12:94119080:A:C	rs79144276	547312	eQTL	6.45e-03	0.211	0.0772	0.00134	0.0353
chr12:94137251:A:T	rs949655010	565483	eQTL	5.67e-03	-0.417	0.15	0.00152	0.00834
chr12:94141326:A:G	\N	569558	eQTL	4.39e-02	0.852	0.422	0.0	0.00147
chr12:92995531:T:C	rs7979657	-576237	eQTL	2.37e-02	0.0618	0.0273	0.0	0.478
chr12:92993924:C:A	\N	-577844	eQTL	4.97e-02	-0.674	0.343	0.0	0.00196
chr12:94150876:T:C	rs3847798	579108	eQTL	4.53e-02	-0.0607	0.0303	0.0	0.286
chr12:94151379:T:G	rs7312498	579611	eQTL	4.12e-02	-0.0622	0.0304	0.0	0.284
chr12:94151573:T:C	rs7312751	579805	eQTL	4.33e-02	-0.0615	0.0304	0.0	0.285
chr12:94155729:A:G	rs145793145	583961	eQTL	4.81e-02	0.144	0.0729	0.0	0.0358
chr12:94159493:G:A	\N	587725	eQTL	2.10e-02	-0.361	0.156	0.0	0.00785
chr12:92974708:C:T	rs75926897	-597060	eQTL	2.80e-02	0.198	0.0899	0.0	0.0231
chr12:94170206:G:A	\N	598438	eQTL	4.39e-02	0.85	0.421	0.0	0.00147
chr12:92966531:T:G	\N	-605237	eQTL	1.98e-02	-0.469	0.201	0.0	0.00442
chr12:94184188:C:T	\N	612420	eQTL	2.98e-02	0.653	0.3	0.0	0.00196
chr12:94199324:C:A	\N	627556	eQTL	2.15e-02	-0.63	0.274	0.0	0.00245
chr12:94221457:G:A	\N	649689	eQTL	3.84e-02	-0.31	0.15	0.0	0.00932
chr12:92912541:T:A	\N	-659227	eQTL	1.03e-02	-0.685	0.266	0.0	0.00294
chr12:94231628:G:A	rs118076962	659860	eQTL	1.53e-02	0.207	0.085	0.0	0.025
chr12:94233646:C:T	\N	661878	eQTL	1.53e-02	0.207	0.085	0.0	0.025
chr12:94233793:C:T	\N	662025	eQTL	3.30e-02	0.684	0.321	0.0	0.00196
chr12:94234521:C:T	\N	662753	eQTL	1.68e-02	0.202	0.0844	0.0	0.0255
chr12:94235040:G:A	rs78660372	663272	eQTL	1.68e-02	0.202	0.0844	0.0	0.0255
chr12:94236649:A:G	\N	664881	eQTL	1.69e-02	0.202	0.0844	0.0	0.0255
chr12:94238130:G:T	rs117702316	666362	eQTL	1.69e-02	0.202	0.0844	0.0	0.0255
chr12:94241560:A:G	rs138722769	669792	eQTL	1.67e-02	0.204	0.085	0.0	0.026
chr12:94242507:G:A	\N	670739	eQTL	2.40e-02	-0.677	0.299	0.0	0.00196
chr12:94243183:C:G	rs142630196	671415	eQTL	1.95e-02	0.203	0.0867	0.0	0.025
chr12:92888445:C:T	\N	-683323	eQTL	1.44e-03	-1.2	0.376	0.00508	0.00147
chr12:92885392:C:T	\N	-686376	eQTL	4.48e-02	0.604	0.301	0.0	0.00196
chr12:92881887:T:A	\N	-689881	eQTL	4.48e-02	0.604	0.301	0.0	0.00196
chr12:94263077:G:T	rs1997201	691309	eQTL	2.50e-02	-0.0967	0.0431	0.0	0.119
chr12:94265994:G:A	\N	694226	eQTL	4.53e-02	-0.524	0.262	0.0	0.00245
chr12:92872301:G:A	\N	-699467	eQTL	7.17e-03	-0.944	0.35	0.00125	0.00196
chr12:94273771:C:G	\N	702003	eQTL	4.05e-02	-0.501	0.244	0.0	0.00294
chr12:94274380:C:G	\N	702612	eQTL	4.40e-02	0.681	0.338	0.0	0.00245
chr12:94278062:C:A	rs144202025	706294	eQTL	4.74e-02	-0.175	0.0881	0.0	0.0255
chr12:94278372:T:C	\N	706604	eQTL	2.03e-02	-0.4	0.172	0.0	0.00638
chr12:92843661:T:C	\N	-728107	eQTL	4.72e-02	-0.697	0.351	0.0	0.00147
chr12:92842384:T:C	\N	-729384	eQTL	1.81e-02	-0.462	0.195	0.0	0.00442
chr12:92839019:A:C	\N	-732749	eQTL	1.37e-03	-1.24	0.388	0.00532	0.00147
chr12:94308439:C:T	\N	736671	eQTL	2.04e-02	0.674	0.29	0.0	0.00196
chr12:92834209:A:G	\N	-737559	eQTL	1.24e-03	-1.25	0.387	0.00584	0.00147
chr12:94310987:C:T	\N	739219	eQTL	9.83e-03	0.792	0.306	0.0	0.00196
chr12:92829505:G:A	\N	-742263	eQTL	4.25e-02	0.608	0.299	0.0	0.00196
chr12:94322215:G:C	rs151228933	750447	eQTL	4.23e-02	-0.165	0.0812	0.0	0.0294
chr12:94328004:T:C	rs113987418	756236	eQTL	4.23e-02	-0.165	0.0812	0.0	0.0294
chr12:94331963:T:C	\N	760195	eQTL	4.63e-02	0.69	0.346	0.0	0.00147
chr12:94335969:C:G	rs73370311	764201	eQTL	4.23e-02	-0.165	0.0812	0.0	0.0294
chr12:92804674:T:A	\N	-767094	eQTL	1.40e-03	-1.26	0.393	0.00522	0.00147
chr12:92803959:C:T	\N	-767809	eQTL	3.60e-02	0.375	0.178	0.0	0.00638
chr12:94344560:C:T	\N	772792	eQTL	3.27e-02	0.548	0.256	0.0	0.00294
chr12:94346049:CTCTT:C	\N	774281	eQTL	1.09e-02	-0.769	0.302	0.0	0.00196
chr12:94348114:A:AT	\N	776346	eQTL	3.82e-02	-0.169	0.0816	0.0	0.0294
chr12:94354095:A:C	rs150858823	782327	eQTL	3.22e-02	-0.175	0.0817	0.0	0.0294
chr12:94376941:G:A	\N	805173	eQTL	4.82e-02	-0.482	0.244	0.0	0.00294
chr12:94377307:C:A	rs117672206	805539	eQTL	3.19e-02	-0.176	0.0818	0.0	0.0294
chr12:94378515:G:A	rs140847791	806747	eQTL	3.19e-02	-0.176	0.0818	0.0	0.0294
chr12:94378712:T:A	rs149324362	806944	eQTL	3.19e-02	-0.176	0.0818	0.0	0.0294
chr12:94378966:C:T	rs2271979	807198	eQTL	4.66e-02	0.0578	0.029	0.0	0.349
chr12:94380743:G:A	rs11107523	808975	eQTL	4.77e-02	0.0575	0.029	0.0	0.351
chr12:94385308:G:A	\N	813540	eQTL	3.74e-02	-0.508	0.244	0.0	0.00294
chr12:94392530:C:G	rs149865949	820762	eQTL	1.66e-02	-0.181	0.0753	0.0	0.0358
chr12:92750305:T:C	\N	-821463	eQTL	3.35e-02	0.447	0.21	0.0	0.00491
chr12:92748391:TGCCTGCC:T	\N	-823377	eQTL	4.45e-02	0.715	0.356	0.0	0.00147
chr12:94400693:CTG:C	\N	828925	eQTL	3.96e-02	-0.777	0.377	0.0	0.00147
chr12:92738285:A:G	\N	-833483	eQTL	4.18e-02	0.61	0.299	0.0	0.00196
chr12:94406210:A:G	rs145913206	834442	eQTL	4.26e-02	-0.168	0.0827	0.0	0.0294
chr12:92730448:C:A	\N	-841320	eQTL	4.18e-02	0.61	0.299	0.0	0.00196
chr12:94426160:G:T	rs146102190	854392	eQTL	3.20e-02	-0.188	0.0875	0.0	0.0245
chr12:94437128:A:G	\N	865360	eQTL	2.43e-02	0.598	0.265	0.0	0.00245
chr12:94444640:C:T	\N	872872	eQTL	9.65e-03	0.794	0.306	0.00101	0.00196
chr12:92694016:T:C	\N	-877752	eQTL	5.54e-04	-1.32	0.38	0.013	0.00147
chr12:94453320:T:C	rs566501484	881552	eQTL	1.79e-02	0.308	0.13	0.0	0.0118
chr12:92688048:TC:T	\N	-883720	eQTL	2.02e-02	0.784	0.337	0.0	0.00196
chr12:94456703:C:T	rs1915335	884935	eQTL	2.91e-02	0.0597	0.0273	0.0	0.407
chr12:94458159:T:C	rs79981373	886391	eQTL	8.22e-03	-0.0986	0.0372	0.00116	0.16
chr12:94459396:T:C	\N	887628	eQTL	1.65e-02	0.612	0.255	0.0	0.00294
chr12:94460325:G:A	\N	888557	eQTL	2.27e-02	0.437	0.191	0.0	0.0054
chr12:92676336:GAATA:G	\N	-895432	eQTL	3.41e-02	-0.78	0.367	0.0	0.00147
chr12:94469885:T:C	\N	898117	eQTL	1.76e-02	-0.804	0.338	0.0	0.00147
chr12:94471701:C:T	rs1520724	899933	eQTL	4.44e-02	0.058	0.0288	0.0	0.296
chr12:92670162:T:A	\N	-901606	eQTL	4.56e-02	-0.368	0.184	0.0	0.00589
chr12:94478767:T:C	\N	906999	eQTL	3.63e-02	0.437	0.208	0.0	0.00491
chr12:92655315:T:G	\N	-916453	eQTL	1.90e-02	0.458	0.195	0.0	0.00589
chr12:94498094:C:T	rs76933931	926326	eQTL	1.50e-02	0.296	0.122	0.0	0.0132
chr12:92643656:A:T	\N	-928112	eQTL	4.40e-02	-0.574	0.284	0.0	0.00245
chr12:94510206:C:T	\N	938438	eQTL	2.93e-02	-0.596	0.273	0.0	0.00245
chr12:92626204:C:G	\N	-945564	eQTL	4.38e-03	-0.58	0.203	0.00192	0.00491
chr12:94517769:G:A	\N	946001	eQTL	3.02e-02	-0.592	0.273	0.0	0.00245
chr12:94531632:T:A	\N	959864	eQTL	4.91e-02	0.364	0.185	0.0	0.0054
chr12:94534483:C:T	rs185155860	962715	eQTL	1.77e-02	0.3	0.126	0.0	0.0132
chr12:92593518:C:T	\N	-978250	eQTL	2.46e-02	0.758	0.337	0.0	0.00147
chr12:92589113:G:T	\N	-982655	eQTL	2.63e-02	0.755	0.339	0.0	0.00196
chr12:92588971:A:G	\N	-982797	eQTL	2.50e-02	0.0621	0.0277	0.0	0.483
chr12:94558504:C:T	\N	986736	eQTL	4.56e-02	0.491	0.245	0.0	0.00294
chr12:94563251:A:G	rs1316366	991483	eQTL	3.83e-02	-0.0574	0.0277	0.0	0.42
chr12:94563599:A:T	rs2625920	991831	eQTL	2.05e-02	-0.0642	0.0276	0.0	0.453

Expression Fold Change in Massively Parallel Reporter Assay (MPRA)

[Click here to download the full results]

mpra plot

Variant ID	rs ID	TSS Distance	P-Value	Expression Fold Change	Tier	Cell Type
chr12:93856011:C:T	rs7296761	284243	0.997	0.000495	None	K562
chr12:93856011:C:T	rs7296761	284243	0.34	0.181	None	HepG2