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Genes within 1Mb (chr12:93108524:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000102189 EEA1 179193 sc-eQTL 6.42e-01 -0.099 0.213 0.051 CD8_TCM L2
ENSG00000120833 SOCS2 -461290 sc-eQTL 2.20e-01 0.224 0.182 0.051 CD8_TCM L2
ENSG00000133639 BTG1 962678 sc-eQTL 3.67e-01 -0.135 0.15 0.051 CD8_TCM L2
ENSG00000169372 CRADD -568851 sc-eQTL 2.40e-01 0.255 0.216 0.051 CD8_TCM L2
ENSG00000173598 NUDT4 -269359 sc-eQTL 3.87e-01 0.149 0.172 0.051 CD8_TCM L2
ENSG00000177889 UBE2N -333423 sc-eQTL 5.38e-01 0.127 0.205 0.051 CD8_TCM L2
ENSG00000198015 MRPL42 -358964 sc-eQTL 8.52e-01 -0.0393 0.21 0.051 CD8_TCM L2
ENSG00000245904 AC025164.1 962951 sc-eQTL 7.43e-01 -0.0678 0.207 0.051 CD8_TCM L2
ENSG00000257242 LINC01619 965610 sc-eQTL 3.34e-01 0.199 0.206 0.051 CD8_TCM L2
ENSG00000102189 EEA1 179193 sc-eQTL 7.12e-01 0.0949 0.256 0.052 PB L2
ENSG00000133639 BTG1 962678 sc-eQTL 2.86e-01 -0.135 0.126 0.052 PB L2
ENSG00000169372 CRADD -568851 sc-eQTL 4.94e-01 0.151 0.22 0.052 PB L2
ENSG00000173598 NUDT4 -269359 sc-eQTL 4.41e-01 0.159 0.206 0.052 PB L2
ENSG00000177889 UBE2N -333423 sc-eQTL 1.63e-01 0.252 0.18 0.052 PB L2
ENSG00000187510 C12orf74 405681 sc-eQTL 7.90e-01 -0.0682 0.256 0.052 PB L2
ENSG00000198015 MRPL42 -358964 sc-eQTL 1.67e-01 0.344 0.247 0.052 PB L2
ENSG00000205056 LINC02397 642073 sc-eQTL 6.49e-01 0.09 0.197 0.052 PB L2
ENSG00000245904 AC025164.1 962951 sc-eQTL 9.22e-01 -0.0214 0.219 0.052 PB L2
ENSG00000257242 LINC01619 965610 sc-eQTL 8.56e-01 0.0434 0.239 0.052 PB L2
ENSG00000257345 LINC02413 109306 sc-eQTL 2.89e-01 0.256 0.241 0.052 PB L2
ENSG00000277851 LINC02391 744692 sc-eQTL 7.81e-01 -0.0671 0.241 0.052 PB L2
ENSG00000102189 EEA1 179193 sc-eQTL 9.43e-02 0.31 0.184 0.051 cDC L2
ENSG00000133639 BTG1 962678 sc-eQTL 1.39e-01 -0.243 0.164 0.051 cDC L2
ENSG00000169372 CRADD -568851 sc-eQTL 5.41e-01 -0.129 0.211 0.051 cDC L2
ENSG00000173598 NUDT4 -269359 sc-eQTL 4.78e-01 -0.152 0.214 0.051 cDC L2
ENSG00000177889 UBE2N -333423 sc-eQTL 1.79e-01 0.251 0.186 0.051 cDC L2
ENSG00000198015 MRPL42 -358964 sc-eQTL 2.26e-01 -0.259 0.213 0.051 cDC L2
ENSG00000205056 LINC02397 642073 sc-eQTL 8.88e-01 0.0184 0.13 0.051 cDC L2
ENSG00000245904 AC025164.1 962951 sc-eQTL 5.71e-01 0.12 0.212 0.051 cDC L2
ENSG00000257242 LINC01619 965610 sc-eQTL 5.27e-01 -0.125 0.198 0.051 cDC L2
ENSG00000277851 LINC02391 744692 sc-eQTL 8.63e-01 0.0332 0.192 0.051 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000187510 C12orf74 405681 eQTL 0.00866 -0.217 0.0826 0.0 0.0011 0.0378
ENSG00000246985 SOCS2-AS1 -463244 eQTL 0.044 0.145 0.0717 0.0 0.0 0.0378

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000187510 C12orf74 405681 1.09e-06 6.26e-07 1.04e-07 3.92e-07 1.13e-07 2.63e-07 5.8e-07 1.09e-07 5.02e-07 2.62e-07 8.15e-07 3.73e-07 9.57e-07 1.49e-07 2.07e-07 2.55e-07 3.24e-07 4.11e-07 1.89e-07 1.3e-07 1.97e-07 4.31e-07 3.87e-07 1.76e-07 8.99e-07 2.55e-07 2.56e-07 2.68e-07 4.15e-07 6.47e-07 3.56e-07 7.69e-08 5.68e-08 1.54e-07 3.31e-07 8.75e-08 1.1e-07 8.21e-08 4.23e-08 5.96e-08 4.63e-08 6.49e-07 1.65e-08 1.92e-08 1.1e-07 1.61e-08 1.1e-07 3.3e-09 5.69e-08