logo

Genes within 1Mb (chr12:112879258:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 460420 sc-eQTL 2.93e-01 -0.112 0.107 0.052 CD4_CTL L2
ENSG00000089060 SLC8B1 -480235 sc-eQTL 3.59e-02 0.402 0.19 0.052 CD4_CTL L2
ENSG00000089127 OAS1 -27525 sc-eQTL 9.24e-01 -0.0164 0.172 0.052 CD4_CTL L2
ENSG00000089248 ERP29 865910 sc-eQTL 1.60e-01 -0.211 0.15 0.052 CD4_CTL L2
ENSG00000111300 NAA25 770462 sc-eQTL 9.89e-01 -0.00266 0.201 0.052 CD4_CTL L2
ENSG00000111331 OAS3 -59186 sc-eQTL 4.87e-01 -0.135 0.193 0.052 CD4_CTL L2
ENSG00000111335 OAS2 -99137 sc-eQTL 7.12e-01 0.07 0.189 0.052 CD4_CTL L2
ENSG00000123064 DDX54 -306221 sc-eQTL 5.43e-01 0.118 0.194 0.052 CD4_CTL L2
ENSG00000135144 DTX1 -177451 sc-eQTL 3.28e-01 0.137 0.139 0.052 CD4_CTL L2
ENSG00000135148 TRAFD1 753720 sc-eQTL 1.23e-01 0.312 0.201 0.052 CD4_CTL L2
ENSG00000139405 RITA1 -306268 sc-eQTL 9.28e-01 0.0174 0.194 0.052 CD4_CTL L2
ENSG00000151176 PLBD2 -479308 sc-eQTL 6.02e-01 0.104 0.199 0.052 CD4_CTL L2
ENSG00000173064 HECTD4 496819 sc-eQTL 4.32e-01 0.135 0.171 0.052 CD4_CTL L2
ENSG00000179295 PTPN11 460907 sc-eQTL 1.72e-01 -0.263 0.192 0.052 CD4_CTL L2
ENSG00000186815 TPCN1 -341792 sc-eQTL 3.07e-01 -0.186 0.182 0.052 CD4_CTL L2
ENSG00000198270 TMEM116 866073 sc-eQTL 6.63e-01 0.0878 0.201 0.052 CD4_CTL L2
ENSG00000089009 RPL6 460420 sc-eQTL 2.99e-01 0.123 0.118 0.051 CD8_TCM L2
ENSG00000089060 SLC8B1 -480235 sc-eQTL 7.58e-01 -0.0598 0.194 0.051 CD8_TCM L2
ENSG00000089127 OAS1 -27525 sc-eQTL 8.15e-01 -0.0396 0.169 0.051 CD8_TCM L2
ENSG00000089248 ERP29 865910 sc-eQTL 6.17e-01 -0.0918 0.183 0.051 CD8_TCM L2
ENSG00000111300 NAA25 770462 sc-eQTL 3.22e-01 0.192 0.193 0.051 CD8_TCM L2
ENSG00000111331 OAS3 -59186 sc-eQTL 2.27e-01 0.242 0.2 0.051 CD8_TCM L2
ENSG00000111335 OAS2 -99137 sc-eQTL 6.74e-01 0.0691 0.164 0.051 CD8_TCM L2
ENSG00000123064 DDX54 -306221 sc-eQTL 9.77e-01 -0.00629 0.213 0.051 CD8_TCM L2
ENSG00000135148 TRAFD1 753720 sc-eQTL 6.31e-01 0.097 0.201 0.051 CD8_TCM L2
ENSG00000139405 RITA1 -306268 sc-eQTL 5.32e-01 -0.126 0.201 0.051 CD8_TCM L2
ENSG00000151176 PLBD2 -479308 sc-eQTL 3.94e-01 0.175 0.205 0.051 CD8_TCM L2
ENSG00000173064 HECTD4 496819 sc-eQTL 1.70e-01 -0.229 0.166 0.051 CD8_TCM L2
ENSG00000179295 PTPN11 460907 sc-eQTL 1.71e-01 -0.26 0.189 0.051 CD8_TCM L2
ENSG00000186815 TPCN1 -341792 sc-eQTL 8.04e-01 -0.0501 0.202 0.051 CD8_TCM L2
ENSG00000198270 TMEM116 866073 sc-eQTL 8.19e-01 -0.048 0.209 0.051 CD8_TCM L2
ENSG00000089009 RPL6 460420 sc-eQTL 1.56e-01 0.179 0.126 0.05 CD8_TEM L2
ENSG00000089060 SLC8B1 -480235 sc-eQTL 9.35e-01 0.0161 0.199 0.05 CD8_TEM L2
ENSG00000089127 OAS1 -27525 sc-eQTL 8.40e-01 0.0318 0.157 0.05 CD8_TEM L2
ENSG00000089248 ERP29 865910 sc-eQTL 3.17e-01 0.164 0.163 0.05 CD8_TEM L2
ENSG00000111300 NAA25 770462 sc-eQTL 2.85e-01 0.205 0.192 0.05 CD8_TEM L2
ENSG00000111331 OAS3 -59186 sc-eQTL 7.63e-02 -0.304 0.17 0.05 CD8_TEM L2
ENSG00000111335 OAS2 -99137 sc-eQTL 7.96e-01 0.0386 0.149 0.05 CD8_TEM L2
ENSG00000123064 DDX54 -306221 sc-eQTL 2.74e-02 0.452 0.203 0.05 CD8_TEM L2
ENSG00000135148 TRAFD1 753720 sc-eQTL 3.91e-01 0.164 0.191 0.05 CD8_TEM L2
ENSG00000139405 RITA1 -306268 sc-eQTL 5.52e-02 -0.359 0.186 0.05 CD8_TEM L2
ENSG00000151176 PLBD2 -479308 sc-eQTL 5.29e-01 0.129 0.205 0.05 CD8_TEM L2
ENSG00000173064 HECTD4 496819 sc-eQTL 5.67e-01 -0.104 0.181 0.05 CD8_TEM L2
ENSG00000179295 PTPN11 460907 sc-eQTL 8.79e-01 -0.0301 0.198 0.05 CD8_TEM L2
ENSG00000186815 TPCN1 -341792 sc-eQTL 1.74e-01 -0.267 0.196 0.05 CD8_TEM L2
ENSG00000198270 TMEM116 866073 sc-eQTL 5.12e-01 0.132 0.2 0.05 CD8_TEM L2
ENSG00000089009 RPL6 460420 sc-eQTL 4.86e-01 0.0785 0.112 0.051 NK_CD56bright L2
ENSG00000089060 SLC8B1 -480235 sc-eQTL 1.01e-01 -0.32 0.194 0.051 NK_CD56bright L2
ENSG00000089127 OAS1 -27525 sc-eQTL 8.28e-01 0.0338 0.155 0.051 NK_CD56bright L2
ENSG00000089248 ERP29 865910 sc-eQTL 6.98e-01 -0.0693 0.178 0.051 NK_CD56bright L2
ENSG00000111300 NAA25 770462 sc-eQTL 7.07e-02 -0.33 0.181 0.051 NK_CD56bright L2
ENSG00000111331 OAS3 -59186 sc-eQTL 7.26e-01 0.0579 0.165 0.051 NK_CD56bright L2
ENSG00000111335 OAS2 -99137 sc-eQTL 3.87e-01 -0.126 0.146 0.051 NK_CD56bright L2
ENSG00000123064 DDX54 -306221 sc-eQTL 3.36e-01 0.192 0.199 0.051 NK_CD56bright L2
ENSG00000135148 TRAFD1 753720 sc-eQTL 3.15e-01 0.183 0.181 0.051 NK_CD56bright L2
ENSG00000139405 RITA1 -306268 sc-eQTL 9.96e-01 0.0011 0.201 0.051 NK_CD56bright L2
ENSG00000151176 PLBD2 -479308 sc-eQTL 9.77e-01 -0.00589 0.2 0.051 NK_CD56bright L2
ENSG00000173064 HECTD4 496819 sc-eQTL 4.31e-01 0.128 0.162 0.051 NK_CD56bright L2
ENSG00000179295 PTPN11 460907 sc-eQTL 7.32e-01 0.0611 0.178 0.051 NK_CD56bright L2
ENSG00000198270 TMEM116 866073 sc-eQTL 1.09e-01 0.317 0.196 0.051 NK_CD56bright L2
ENSG00000089009 RPL6 460420 sc-eQTL 9.03e-01 -0.012 0.098 0.053 NK_HLA L2
ENSG00000089060 SLC8B1 -480235 sc-eQTL 7.44e-01 0.0614 0.187 0.053 NK_HLA L2
ENSG00000089127 OAS1 -27525 sc-eQTL 1.42e-01 0.243 0.164 0.053 NK_HLA L2
ENSG00000089248 ERP29 865910 sc-eQTL 9.08e-01 0.0199 0.171 0.053 NK_HLA L2
ENSG00000111300 NAA25 770462 sc-eQTL 5.22e-01 -0.126 0.196 0.053 NK_HLA L2
ENSG00000111331 OAS3 -59186 sc-eQTL 5.72e-01 -0.0976 0.172 0.053 NK_HLA L2
ENSG00000111335 OAS2 -99137 sc-eQTL 9.06e-01 0.0198 0.168 0.053 NK_HLA L2
ENSG00000123064 DDX54 -306221 sc-eQTL 5.47e-01 -0.123 0.204 0.053 NK_HLA L2
ENSG00000135148 TRAFD1 753720 sc-eQTL 8.84e-01 0.0276 0.19 0.053 NK_HLA L2
ENSG00000139405 RITA1 -306268 sc-eQTL 4.41e-01 0.152 0.197 0.053 NK_HLA L2
ENSG00000151176 PLBD2 -479308 sc-eQTL 7.44e-01 -0.0636 0.195 0.053 NK_HLA L2
ENSG00000173064 HECTD4 496819 sc-eQTL 7.48e-01 -0.0568 0.177 0.053 NK_HLA L2
ENSG00000179295 PTPN11 460907 sc-eQTL 2.08e-01 -0.233 0.184 0.053 NK_HLA L2
ENSG00000198270 TMEM116 866073 sc-eQTL 1.87e-02 0.43 0.181 0.053 NK_HLA L2
ENSG00000089009 RPL6 460420 sc-eQTL 4.34e-01 -0.0798 0.102 0.061 gdT L2
ENSG00000089060 SLC8B1 -480235 sc-eQTL 3.94e-01 -0.166 0.195 0.061 gdT L2
ENSG00000089127 OAS1 -27525 sc-eQTL 5.88e-01 0.1 0.184 0.061 gdT L2
ENSG00000089248 ERP29 865910 sc-eQTL 2.08e-01 -0.238 0.188 0.061 gdT L2
ENSG00000111300 NAA25 770462 sc-eQTL 8.28e-01 0.0482 0.222 0.061 gdT L2
ENSG00000111331 OAS3 -59186 sc-eQTL 3.52e-01 0.193 0.207 0.061 gdT L2
ENSG00000111335 OAS2 -99137 sc-eQTL 6.12e-01 -0.0858 0.169 0.061 gdT L2
ENSG00000123064 DDX54 -306221 sc-eQTL 8.92e-01 -0.0297 0.218 0.061 gdT L2
ENSG00000135144 DTX1 -177451 sc-eQTL 7.16e-01 0.0629 0.173 0.061 gdT L2
ENSG00000135148 TRAFD1 753720 sc-eQTL 3.51e-01 0.191 0.204 0.061 gdT L2
ENSG00000139405 RITA1 -306268 sc-eQTL 5.52e-01 0.132 0.221 0.061 gdT L2
ENSG00000151176 PLBD2 -479308 sc-eQTL 2.75e-01 0.215 0.196 0.061 gdT L2
ENSG00000173064 HECTD4 496819 sc-eQTL 3.85e-01 0.171 0.196 0.061 gdT L2
ENSG00000179295 PTPN11 460907 sc-eQTL 5.94e-01 -0.108 0.203 0.061 gdT L2
ENSG00000186815 TPCN1 -341792 sc-eQTL 9.78e-01 0.00546 0.2 0.061 gdT L2
ENSG00000198270 TMEM116 866073 sc-eQTL 2.13e-01 0.245 0.196 0.061 gdT L2
ENSG00000089009 RPL6 460420 sc-eQTL 9.14e-01 -0.00985 0.0909 0.052 ncMono L2
ENSG00000089060 SLC8B1 -480235 sc-eQTL 9.17e-01 -0.0179 0.171 0.052 ncMono L2
ENSG00000089127 OAS1 -27525 sc-eQTL 3.01e-01 -0.0993 0.0958 0.052 ncMono L2
ENSG00000089169 RPH3A 308878 sc-eQTL 4.58e-01 -0.121 0.163 0.052 ncMono L2
ENSG00000089248 ERP29 865910 sc-eQTL 8.58e-01 0.0293 0.164 0.052 ncMono L2
ENSG00000111300 NAA25 770462 sc-eQTL 3.68e-01 0.182 0.202 0.052 ncMono L2
ENSG00000111331 OAS3 -59186 sc-eQTL 1.07e-01 -0.231 0.143 0.052 ncMono L2
ENSG00000111335 OAS2 -99137 sc-eQTL 7.92e-02 -0.244 0.138 0.052 ncMono L2
ENSG00000123064 DDX54 -306221 sc-eQTL 5.04e-01 -0.12 0.18 0.052 ncMono L2
ENSG00000135148 TRAFD1 753720 sc-eQTL 2.40e-01 -0.17 0.144 0.052 ncMono L2
ENSG00000139405 RITA1 -306268 sc-eQTL 3.58e-01 -0.188 0.204 0.052 ncMono L2
ENSG00000139410 SDSL -543122 sc-eQTL 5.93e-01 -0.0901 0.168 0.052 ncMono L2
ENSG00000151176 PLBD2 -479308 sc-eQTL 4.44e-01 -0.135 0.176 0.052 ncMono L2
ENSG00000173064 HECTD4 496819 sc-eQTL 8.75e-01 0.0246 0.156 0.052 ncMono L2
ENSG00000179295 PTPN11 460907 sc-eQTL 5.65e-01 -0.115 0.199 0.052 ncMono L2
ENSG00000186815 TPCN1 -341792 sc-eQTL 7.48e-01 -0.0503 0.156 0.052 ncMono L2
ENSG00000198270 TMEM116 866073 sc-eQTL 3.52e-01 -0.179 0.192 0.052 ncMono L2
ENSG00000089009 RPL6 460420 sc-eQTL 4.31e-01 0.0879 0.111 0.059 pDC L2
ENSG00000089060 SLC8B1 -480235 sc-eQTL 3.23e-01 0.216 0.218 0.059 pDC L2
ENSG00000089127 OAS1 -27525 sc-eQTL 6.38e-01 0.0672 0.142 0.059 pDC L2
ENSG00000089169 RPH3A 308878 sc-eQTL 7.95e-01 0.0425 0.163 0.059 pDC L2
ENSG00000089248 ERP29 865910 sc-eQTL 8.52e-01 0.025 0.134 0.059 pDC L2
ENSG00000111300 NAA25 770462 sc-eQTL 9.95e-01 -0.00115 0.198 0.059 pDC L2
ENSG00000111331 OAS3 -59186 sc-eQTL 6.45e-01 0.0792 0.171 0.059 pDC L2
ENSG00000111335 OAS2 -99137 sc-eQTL 9.71e-01 0.00662 0.183 0.059 pDC L2
ENSG00000123064 DDX54 -306221 sc-eQTL 9.70e-01 -0.00801 0.212 0.059 pDC L2
ENSG00000135094 SDS -547043 sc-eQTL 8.62e-01 -0.0268 0.154 0.059 pDC L2
ENSG00000135148 TRAFD1 753720 sc-eQTL 6.69e-01 -0.0904 0.211 0.059 pDC L2
ENSG00000139405 RITA1 -306268 sc-eQTL 4.92e-01 -0.147 0.214 0.059 pDC L2
ENSG00000139410 SDSL -543122 sc-eQTL 6.95e-01 -0.0824 0.21 0.059 pDC L2
ENSG00000151176 PLBD2 -479308 sc-eQTL 5.75e-01 -0.123 0.22 0.059 pDC L2
ENSG00000166578 IQCD -341836 sc-eQTL 3.46e-01 0.159 0.168 0.059 pDC L2
ENSG00000173064 HECTD4 496819 sc-eQTL 8.35e-01 -0.0375 0.179 0.059 pDC L2
ENSG00000179295 PTPN11 460907 sc-eQTL 4.36e-01 0.16 0.205 0.059 pDC L2
ENSG00000186815 TPCN1 -341792 sc-eQTL 6.41e-02 -0.367 0.197 0.059 pDC L2
ENSG00000198270 TMEM116 866073 sc-eQTL 8.55e-01 -0.0374 0.204 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -480235 eQTL 0.0246 -0.155 0.0687 0.0 0.0 0.0319
ENSG00000089169 RPH3A 308878 eQTL 0.00122 0.279 0.086 0.0 0.0 0.0319
ENSG00000111300 NAA25 770462 eQTL 0.0375 0.0724 0.0348 0.0 0.0 0.0319
ENSG00000173064 HECTD4 496819 eQTL 0.00424 -0.118 0.0412 0.0 0.0 0.0319

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089169 RPH3A 308878 1.26e-06 9.07e-07 1.57e-07 3.15e-07 9.77e-08 3.18e-07 7.54e-07 2.73e-07 7.56e-07 3.11e-07 1.09e-06 5.51e-07 1.28e-06 1.98e-07 3.86e-07 3.79e-07 6.44e-07 4.65e-07 3.5e-07 3.06e-07 2.53e-07 5.83e-07 5.41e-07 3.32e-07 1.38e-06 2.34e-07 4.7e-07 3.89e-07 6.47e-07 9.25e-07 4.59e-07 4.25e-08 1.31e-07 2.12e-07 3.23e-07 3e-07 2.57e-07 1.41e-07 1.41e-07 8.85e-09 1.16e-07 1.02e-06 6.18e-08 1.26e-08 1.93e-07 3.46e-08 1.37e-07 8.34e-08 5.25e-08
ENSG00000111300 NAA25 770462 2.69e-07 1.3e-07 3.88e-08 1.81e-07 9.16e-08 9.76e-08 1.49e-07 5.43e-08 1.44e-07 4.74e-08 1.62e-07 8.55e-08 1.41e-07 6.56e-08 6.02e-08 7.3e-08 3.87e-08 1.26e-07 5.75e-08 4.04e-08 1.19e-07 1.28e-07 1.39e-07 3.23e-08 1.37e-07 1.14e-07 1.06e-07 9.57e-08 1.09e-07 1.03e-07 9.64e-08 3.68e-08 3.89e-08 8.44e-08 8.21e-08 3.49e-08 5.59e-08 8.93e-08 6.71e-08 3.76e-08 4.64e-08 1.35e-07 4.89e-08 7.61e-09 4.67e-08 1.99e-08 1.21e-07 1.88e-09 5e-08
ENSG00000123064 \N -306221 1.26e-06 8.81e-07 1.59e-07 3.2e-07 9.93e-08 3.08e-07 7.44e-07 2.64e-07 7.85e-07 3.05e-07 1.07e-06 5.5e-07 1.3e-06 1.97e-07 4.15e-07 3.96e-07 6.67e-07 4.72e-07 3.43e-07 3.11e-07 2.62e-07 5.71e-07 5.49e-07 3.56e-07 1.39e-06 2.38e-07 4.71e-07 3.95e-07 6.76e-07 9.22e-07 4.48e-07 4.31e-08 1.32e-07 2.17e-07 3.28e-07 3.02e-07 2.79e-07 1.36e-07 1.33e-07 1.79e-08 1.18e-07 1.06e-06 6.3e-08 1.27e-08 1.85e-07 3.54e-08 1.46e-07 8.41e-08 5.32e-08
ENSG00000173064 HECTD4 496819 3.27e-07 1.92e-07 6.57e-08 2.49e-07 1.07e-07 1.08e-07 2.86e-07 7.12e-08 1.86e-07 1.11e-07 2.04e-07 1.62e-07 2.94e-07 8.44e-08 6.93e-08 9.35e-08 6.17e-08 2.15e-07 7.76e-08 6.58e-08 1.39e-07 1.9e-07 1.81e-07 3.41e-08 2.36e-07 1.71e-07 1.25e-07 1.36e-07 1.36e-07 1.85e-07 1.35e-07 4.71e-08 4.87e-08 1.02e-07 6.35e-08 4.86e-08 6.29e-08 5.71e-08 4.99e-08 7.65e-08 5.04e-08 2e-07 3.08e-08 2.06e-08 5.32e-08 6.98e-09 7.26e-08 0.0 4.59e-08