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Genes within 1Mb (chr12:112876485:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 457647 sc-eQTL 3.21e-01 -0.108 0.109 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 -483008 sc-eQTL 6.42e-02 0.362 0.194 0.05 CD4_CTL L2
ENSG00000089127 OAS1 -30298 sc-eQTL 7.40e-01 -0.0583 0.175 0.05 CD4_CTL L2
ENSG00000089248 ERP29 863137 sc-eQTL 1.24e-01 -0.235 0.152 0.05 CD4_CTL L2
ENSG00000111300 NAA25 767689 sc-eQTL 9.26e-01 -0.0191 0.205 0.05 CD4_CTL L2
ENSG00000111331 OAS3 -61959 sc-eQTL 5.38e-01 -0.122 0.197 0.05 CD4_CTL L2
ENSG00000111335 OAS2 -101910 sc-eQTL 9.48e-01 0.0125 0.193 0.05 CD4_CTL L2
ENSG00000123064 DDX54 -308994 sc-eQTL 8.52e-01 0.037 0.198 0.05 CD4_CTL L2
ENSG00000135144 DTX1 -180224 sc-eQTL 2.60e-01 0.16 0.142 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 750947 sc-eQTL 7.10e-02 0.371 0.204 0.05 CD4_CTL L2
ENSG00000139405 RITA1 -309041 sc-eQTL 8.59e-01 0.0351 0.197 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 -482081 sc-eQTL 7.50e-01 0.0647 0.203 0.05 CD4_CTL L2
ENSG00000173064 HECTD4 494046 sc-eQTL 5.82e-01 0.0963 0.175 0.05 CD4_CTL L2
ENSG00000179295 PTPN11 458134 sc-eQTL 2.11e-01 -0.245 0.196 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 -344565 sc-eQTL 4.40e-01 -0.143 0.185 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 863300 sc-eQTL 7.67e-01 0.0609 0.205 0.05 CD4_CTL L2
ENSG00000089009 RPL6 457647 sc-eQTL 9.91e-01 -0.00109 0.0994 0.05 NK_HLA L2
ENSG00000089060 SLC8B1 -483008 sc-eQTL 8.11e-01 0.0454 0.19 0.05 NK_HLA L2
ENSG00000089127 OAS1 -30298 sc-eQTL 2.14e-01 0.208 0.167 0.05 NK_HLA L2
ENSG00000089248 ERP29 863137 sc-eQTL 9.57e-01 0.00936 0.174 0.05 NK_HLA L2
ENSG00000111300 NAA25 767689 sc-eQTL 5.61e-01 -0.116 0.199 0.05 NK_HLA L2
ENSG00000111331 OAS3 -61959 sc-eQTL 5.86e-01 -0.0952 0.175 0.05 NK_HLA L2
ENSG00000111335 OAS2 -101910 sc-eQTL 8.94e-01 0.0228 0.17 0.05 NK_HLA L2
ENSG00000123064 DDX54 -308994 sc-eQTL 5.25e-01 -0.132 0.207 0.05 NK_HLA L2
ENSG00000135148 TRAFD1 750947 sc-eQTL 9.42e-01 0.014 0.192 0.05 NK_HLA L2
ENSG00000139405 RITA1 -309041 sc-eQTL 4.48e-01 0.152 0.2 0.05 NK_HLA L2
ENSG00000151176 PLBD2 -482081 sc-eQTL 6.95e-01 -0.0776 0.198 0.05 NK_HLA L2
ENSG00000173064 HECTD4 494046 sc-eQTL 8.69e-01 -0.0296 0.179 0.05 NK_HLA L2
ENSG00000179295 PTPN11 458134 sc-eQTL 3.52e-01 -0.175 0.187 0.05 NK_HLA L2
ENSG00000198270 TMEM116 863300 sc-eQTL 2.70e-02 0.41 0.184 0.05 NK_HLA L2
ENSG00000089009 RPL6 457647 sc-eQTL 6.44e-01 -0.0482 0.104 0.058 gdT L2
ENSG00000089060 SLC8B1 -483008 sc-eQTL 6.11e-01 -0.102 0.199 0.058 gdT L2
ENSG00000089127 OAS1 -30298 sc-eQTL 2.79e-01 0.204 0.187 0.058 gdT L2
ENSG00000089248 ERP29 863137 sc-eQTL 1.67e-01 -0.266 0.192 0.058 gdT L2
ENSG00000111300 NAA25 767689 sc-eQTL 7.60e-01 0.0692 0.227 0.058 gdT L2
ENSG00000111331 OAS3 -61959 sc-eQTL 5.12e-01 0.139 0.211 0.058 gdT L2
ENSG00000111335 OAS2 -101910 sc-eQTL 6.92e-01 -0.0683 0.172 0.058 gdT L2
ENSG00000123064 DDX54 -308994 sc-eQTL 8.25e-01 0.0494 0.223 0.058 gdT L2
ENSG00000135144 DTX1 -180224 sc-eQTL 5.73e-01 0.0996 0.176 0.058 gdT L2
ENSG00000135148 TRAFD1 750947 sc-eQTL 2.22e-01 0.255 0.208 0.058 gdT L2
ENSG00000139405 RITA1 -309041 sc-eQTL 6.54e-01 0.101 0.226 0.058 gdT L2
ENSG00000151176 PLBD2 -482081 sc-eQTL 4.13e-01 0.164 0.2 0.058 gdT L2
ENSG00000173064 HECTD4 494046 sc-eQTL 3.40e-01 0.192 0.2 0.058 gdT L2
ENSG00000179295 PTPN11 458134 sc-eQTL 5.28e-01 -0.131 0.207 0.058 gdT L2
ENSG00000186815 TPCN1 -344565 sc-eQTL 7.17e-01 0.0743 0.204 0.058 gdT L2
ENSG00000198270 TMEM116 863300 sc-eQTL 1.76e-01 0.272 0.2 0.058 gdT L2
ENSG00000089009 RPL6 457647 sc-eQTL 5.46e-01 0.0684 0.113 0.056 pDC L2
ENSG00000089060 SLC8B1 -483008 sc-eQTL 2.77e-01 0.241 0.221 0.056 pDC L2
ENSG00000089127 OAS1 -30298 sc-eQTL 4.80e-01 0.102 0.145 0.056 pDC L2
ENSG00000089169 RPH3A 306105 sc-eQTL 6.66e-01 0.0715 0.165 0.056 pDC L2
ENSG00000089248 ERP29 863137 sc-eQTL 9.97e-01 -0.000471 0.136 0.056 pDC L2
ENSG00000111300 NAA25 767689 sc-eQTL 5.89e-01 0.109 0.201 0.056 pDC L2
ENSG00000111331 OAS3 -61959 sc-eQTL 7.57e-01 0.0539 0.174 0.056 pDC L2
ENSG00000111335 OAS2 -101910 sc-eQTL 6.46e-01 0.0857 0.186 0.056 pDC L2
ENSG00000123064 DDX54 -308994 sc-eQTL 8.07e-01 -0.0529 0.216 0.056 pDC L2
ENSG00000135094 SDS -549816 sc-eQTL 9.96e-01 -0.000718 0.156 0.056 pDC L2
ENSG00000135148 TRAFD1 750947 sc-eQTL 7.96e-01 -0.0555 0.214 0.056 pDC L2
ENSG00000139405 RITA1 -309041 sc-eQTL 5.96e-01 -0.115 0.217 0.056 pDC L2
ENSG00000139410 SDSL -545895 sc-eQTL 9.92e-01 -0.00217 0.213 0.056 pDC L2
ENSG00000151176 PLBD2 -482081 sc-eQTL 8.48e-01 -0.0428 0.223 0.056 pDC L2
ENSG00000166578 IQCD -344609 sc-eQTL 2.23e-01 0.208 0.17 0.056 pDC L2
ENSG00000173064 HECTD4 494046 sc-eQTL 8.06e-01 -0.0448 0.182 0.056 pDC L2
ENSG00000179295 PTPN11 458134 sc-eQTL 4.18e-01 0.169 0.208 0.056 pDC L2
ENSG00000186815 TPCN1 -344565 sc-eQTL 3.76e-02 -0.418 0.199 0.056 pDC L2
ENSG00000198270 TMEM116 863300 sc-eQTL 6.89e-01 -0.0833 0.207 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -483008 eQTL 0.0234 -0.16 0.0706 0.0 0.0 0.0299
ENSG00000089169 RPH3A 306105 eQTL 0.00115 0.288 0.0884 0.0 0.0 0.0299
ENSG00000111300 NAA25 767689 eQTL 0.0228 0.0814 0.0357 0.0 0.0 0.0299
ENSG00000173064 HECTD4 494046 eQTL 0.00145 -0.135 0.0423 0.0 0.0 0.0299

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089169 RPH3A 306105 1.24e-06 8.81e-07 2.84e-07 3.19e-07 1.77e-07 3.12e-07 8.36e-07 2.71e-07 9.89e-07 3.11e-07 1.13e-06 5.62e-07 1.49e-06 2.05e-07 4.26e-07 5.49e-07 7.39e-07 5.33e-07 4e-07 3.99e-07 2.82e-07 7.21e-07 6.11e-07 4.66e-07 1.64e-06 2.47e-07 5.49e-07 4.71e-07 8e-07 9.73e-07 4.53e-07 3.67e-08 1.32e-07 3.28e-07 3.18e-07 3.1e-07 2.34e-07 1.32e-07 1.6e-07 9.5e-09 2.11e-07 1.09e-06 6.68e-08 1.21e-08 1.74e-07 4.38e-08 1.77e-07 8.16e-08 6.51e-08
ENSG00000111300 NAA25 767689 2.8e-07 1.27e-07 5.03e-08 1.81e-07 1.01e-07 9.91e-08 1.6e-07 5.53e-08 1.45e-07 5.67e-08 1.57e-07 1.08e-07 1.53e-07 7.13e-08 6.18e-08 7.5e-08 4.01e-08 1.4e-07 5.97e-08 4.21e-08 1.21e-07 1.24e-07 1.44e-07 2.91e-08 1.63e-07 1.25e-07 1.1e-07 9.74e-08 1.2e-07 9.49e-08 1.06e-07 3.1e-08 3.89e-08 8.11e-08 6.34e-08 3.2e-08 4.99e-08 8.93e-08 6.59e-08 3.86e-08 4.69e-08 1.46e-07 5.2e-08 1.35e-08 3.84e-08 1.84e-08 1.21e-07 1.88e-09 5.01e-08
ENSG00000123064 \N -308994 1.26e-06 9.07e-07 2.81e-07 3.71e-07 1.81e-07 3.08e-07 7.96e-07 2.65e-07 9.42e-07 2.77e-07 1.1e-06 5.73e-07 1.37e-06 2.08e-07 4.17e-07 5.02e-07 7.47e-07 5.27e-07 3.84e-07 3.96e-07 2.57e-07 7.26e-07 6.18e-07 4.79e-07 1.59e-06 2.55e-07 5.49e-07 4.59e-07 7.61e-07 9.45e-07 4.54e-07 4.57e-08 1.21e-07 2.97e-07 3.22e-07 2.96e-07 2.14e-07 1.15e-07 1.24e-07 1.87e-08 1.98e-07 1.08e-06 7.37e-08 1.21e-08 1.84e-07 4.33e-08 1.83e-07 7.35e-08 5.77e-08
ENSG00000173064 HECTD4 494046 5.59e-07 2.5e-07 7.72e-08 2.41e-07 1.11e-07 1.28e-07 3.42e-07 7.65e-08 2.53e-07 1.46e-07 2.98e-07 2.22e-07 4.05e-07 8.55e-08 9.33e-08 1.33e-07 8.53e-08 2.87e-07 9.19e-08 8.1e-08 1.35e-07 2.3e-07 2.26e-07 6.65e-08 3.55e-07 1.94e-07 1.57e-07 1.54e-07 1.76e-07 2.39e-07 1.78e-07 5.3e-08 4.98e-08 1.03e-07 1.07e-07 5.23e-08 5.76e-08 5.71e-08 4.99e-08 8.34e-08 3.6e-08 2.6e-07 3.31e-08 7.21e-09 6.59e-08 1.03e-08 9.1e-08 0.0 4.66e-08