logo

Genes within 1Mb (chr12:112875166:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 456328 sc-eQTL 3.21e-01 -0.108 0.109 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 -484327 sc-eQTL 6.42e-02 0.362 0.194 0.05 CD4_CTL L2
ENSG00000089127 OAS1 -31617 sc-eQTL 7.40e-01 -0.0583 0.175 0.05 CD4_CTL L2
ENSG00000089248 ERP29 861818 sc-eQTL 1.24e-01 -0.235 0.152 0.05 CD4_CTL L2
ENSG00000111300 NAA25 766370 sc-eQTL 9.26e-01 -0.0191 0.205 0.05 CD4_CTL L2
ENSG00000111331 OAS3 -63278 sc-eQTL 5.38e-01 -0.122 0.197 0.05 CD4_CTL L2
ENSG00000111335 OAS2 -103229 sc-eQTL 9.48e-01 0.0125 0.193 0.05 CD4_CTL L2
ENSG00000123064 DDX54 -310313 sc-eQTL 8.52e-01 0.037 0.198 0.05 CD4_CTL L2
ENSG00000135144 DTX1 -181543 sc-eQTL 2.60e-01 0.16 0.142 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 749628 sc-eQTL 7.10e-02 0.371 0.204 0.05 CD4_CTL L2
ENSG00000139405 RITA1 -310360 sc-eQTL 8.59e-01 0.0351 0.197 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 -483400 sc-eQTL 7.50e-01 0.0647 0.203 0.05 CD4_CTL L2
ENSG00000173064 HECTD4 492727 sc-eQTL 5.82e-01 0.0963 0.175 0.05 CD4_CTL L2
ENSG00000179295 PTPN11 456815 sc-eQTL 2.11e-01 -0.245 0.196 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 -345884 sc-eQTL 4.40e-01 -0.143 0.185 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 861981 sc-eQTL 7.67e-01 0.0609 0.205 0.05 CD4_CTL L2
ENSG00000089009 RPL6 456328 sc-eQTL 9.91e-01 -0.00109 0.0994 0.05 NK_HLA L2
ENSG00000089060 SLC8B1 -484327 sc-eQTL 8.11e-01 0.0454 0.19 0.05 NK_HLA L2
ENSG00000089127 OAS1 -31617 sc-eQTL 2.14e-01 0.208 0.167 0.05 NK_HLA L2
ENSG00000089248 ERP29 861818 sc-eQTL 9.57e-01 0.00936 0.174 0.05 NK_HLA L2
ENSG00000111300 NAA25 766370 sc-eQTL 5.61e-01 -0.116 0.199 0.05 NK_HLA L2
ENSG00000111331 OAS3 -63278 sc-eQTL 5.86e-01 -0.0952 0.175 0.05 NK_HLA L2
ENSG00000111335 OAS2 -103229 sc-eQTL 8.94e-01 0.0228 0.17 0.05 NK_HLA L2
ENSG00000123064 DDX54 -310313 sc-eQTL 5.25e-01 -0.132 0.207 0.05 NK_HLA L2
ENSG00000135148 TRAFD1 749628 sc-eQTL 9.42e-01 0.014 0.192 0.05 NK_HLA L2
ENSG00000139405 RITA1 -310360 sc-eQTL 4.48e-01 0.152 0.2 0.05 NK_HLA L2
ENSG00000151176 PLBD2 -483400 sc-eQTL 6.95e-01 -0.0776 0.198 0.05 NK_HLA L2
ENSG00000173064 HECTD4 492727 sc-eQTL 8.69e-01 -0.0296 0.179 0.05 NK_HLA L2
ENSG00000179295 PTPN11 456815 sc-eQTL 3.52e-01 -0.175 0.187 0.05 NK_HLA L2
ENSG00000198270 TMEM116 861981 sc-eQTL 2.70e-02 0.41 0.184 0.05 NK_HLA L2
ENSG00000089009 RPL6 456328 sc-eQTL 6.44e-01 -0.0482 0.104 0.058 gdT L2
ENSG00000089060 SLC8B1 -484327 sc-eQTL 6.11e-01 -0.102 0.199 0.058 gdT L2
ENSG00000089127 OAS1 -31617 sc-eQTL 2.79e-01 0.204 0.187 0.058 gdT L2
ENSG00000089248 ERP29 861818 sc-eQTL 1.67e-01 -0.266 0.192 0.058 gdT L2
ENSG00000111300 NAA25 766370 sc-eQTL 7.60e-01 0.0692 0.227 0.058 gdT L2
ENSG00000111331 OAS3 -63278 sc-eQTL 5.12e-01 0.139 0.211 0.058 gdT L2
ENSG00000111335 OAS2 -103229 sc-eQTL 6.92e-01 -0.0683 0.172 0.058 gdT L2
ENSG00000123064 DDX54 -310313 sc-eQTL 8.25e-01 0.0494 0.223 0.058 gdT L2
ENSG00000135144 DTX1 -181543 sc-eQTL 5.73e-01 0.0996 0.176 0.058 gdT L2
ENSG00000135148 TRAFD1 749628 sc-eQTL 2.22e-01 0.255 0.208 0.058 gdT L2
ENSG00000139405 RITA1 -310360 sc-eQTL 6.54e-01 0.101 0.226 0.058 gdT L2
ENSG00000151176 PLBD2 -483400 sc-eQTL 4.13e-01 0.164 0.2 0.058 gdT L2
ENSG00000173064 HECTD4 492727 sc-eQTL 3.40e-01 0.192 0.2 0.058 gdT L2
ENSG00000179295 PTPN11 456815 sc-eQTL 5.28e-01 -0.131 0.207 0.058 gdT L2
ENSG00000186815 TPCN1 -345884 sc-eQTL 7.17e-01 0.0743 0.204 0.058 gdT L2
ENSG00000198270 TMEM116 861981 sc-eQTL 1.76e-01 0.272 0.2 0.058 gdT L2
ENSG00000089009 RPL6 456328 sc-eQTL 5.46e-01 0.0684 0.113 0.056 pDC L2
ENSG00000089060 SLC8B1 -484327 sc-eQTL 2.77e-01 0.241 0.221 0.056 pDC L2
ENSG00000089127 OAS1 -31617 sc-eQTL 4.80e-01 0.102 0.145 0.056 pDC L2
ENSG00000089169 RPH3A 304786 sc-eQTL 6.66e-01 0.0715 0.165 0.056 pDC L2
ENSG00000089248 ERP29 861818 sc-eQTL 9.97e-01 -0.000471 0.136 0.056 pDC L2
ENSG00000111300 NAA25 766370 sc-eQTL 5.89e-01 0.109 0.201 0.056 pDC L2
ENSG00000111331 OAS3 -63278 sc-eQTL 7.57e-01 0.0539 0.174 0.056 pDC L2
ENSG00000111335 OAS2 -103229 sc-eQTL 6.46e-01 0.0857 0.186 0.056 pDC L2
ENSG00000123064 DDX54 -310313 sc-eQTL 8.07e-01 -0.0529 0.216 0.056 pDC L2
ENSG00000135094 SDS -551135 sc-eQTL 9.96e-01 -0.000718 0.156 0.056 pDC L2
ENSG00000135148 TRAFD1 749628 sc-eQTL 7.96e-01 -0.0555 0.214 0.056 pDC L2
ENSG00000139405 RITA1 -310360 sc-eQTL 5.96e-01 -0.115 0.217 0.056 pDC L2
ENSG00000139410 SDSL -547214 sc-eQTL 9.92e-01 -0.00217 0.213 0.056 pDC L2
ENSG00000151176 PLBD2 -483400 sc-eQTL 8.48e-01 -0.0428 0.223 0.056 pDC L2
ENSG00000166578 IQCD -345928 sc-eQTL 2.23e-01 0.208 0.17 0.056 pDC L2
ENSG00000173064 HECTD4 492727 sc-eQTL 8.06e-01 -0.0448 0.182 0.056 pDC L2
ENSG00000179295 PTPN11 456815 sc-eQTL 4.18e-01 0.169 0.208 0.056 pDC L2
ENSG00000186815 TPCN1 -345884 sc-eQTL 3.76e-02 -0.418 0.199 0.056 pDC L2
ENSG00000198270 TMEM116 861981 sc-eQTL 6.89e-01 -0.0833 0.207 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -484327 eQTL 0.0238 -0.16 0.0706 0.0 0.0 0.0299
ENSG00000089169 RPH3A 304786 eQTL 0.00114 0.289 0.0885 0.0 0.0 0.0299
ENSG00000111300 NAA25 766370 eQTL 0.0227 0.0816 0.0357 0.0 0.0 0.0299
ENSG00000173064 HECTD4 492727 eQTL 0.00146 -0.135 0.0423 0.0 0.0 0.0299

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089169 RPH3A 304786 8.48e-07 9.48e-07 1.57e-07 3.65e-07 1.19e-07 2.46e-07 5.8e-07 2.7e-07 6.71e-07 3.11e-07 1.09e-06 4.43e-07 9.44e-07 1.84e-07 3.31e-07 3.96e-07 5.34e-07 4.25e-07 5.29e-07 3.93e-07 2.38e-07 5.69e-07 4.01e-07 3.09e-07 1.14e-06 2.49e-07 4.62e-07 3.51e-07 4.76e-07 8.5e-07 3.81e-07 6.37e-08 5.48e-08 1.5e-07 3e-07 2.76e-07 2.59e-07 6.46e-08 4.11e-08 8.36e-09 5.65e-08 1.19e-06 4.71e-08 1.28e-08 1.71e-07 1.59e-08 7.36e-08 2.8e-09 8.21e-08
ENSG00000111300 NAA25 766370 2.61e-07 1.19e-07 3.72e-08 1.82e-07 9.16e-08 9.3e-08 1.41e-07 5.19e-08 1.41e-07 4.4e-08 1.56e-07 8.03e-08 1.26e-07 6.21e-08 5.53e-08 7.17e-08 4.63e-08 1.14e-07 6.07e-08 4.45e-08 1.04e-07 1.27e-07 1.26e-07 4.05e-08 1.31e-07 1.19e-07 1.11e-07 9.32e-08 1.02e-07 1.12e-07 9.73e-08 4.07e-08 2.74e-08 8.82e-08 9.15e-08 3.93e-08 5.05e-08 9.35e-08 8.3e-08 3e-08 3.35e-08 1.35e-07 4.04e-08 1.17e-08 5.87e-08 1.7e-08 1.25e-07 4.33e-09 4.94e-08
ENSG00000123064 \N -310313 8.35e-07 9.44e-07 1.45e-07 3.44e-07 1.16e-07 2.16e-07 5.76e-07 2.47e-07 6.53e-07 3.22e-07 1.07e-06 4.21e-07 9.1e-07 1.59e-07 3.12e-07 3.68e-07 4.73e-07 4.39e-07 5.07e-07 3.54e-07 2.39e-07 5.5e-07 4.2e-07 3.01e-07 1.02e-06 2.49e-07 4.25e-07 3.24e-07 4.33e-07 8.51e-07 3.66e-07 6.77e-08 5.73e-08 1.49e-07 3.04e-07 2.59e-07 2.34e-07 6.2e-08 5.62e-08 1.61e-08 5.48e-08 1.12e-06 4.53e-08 1.26e-08 1.58e-07 1.91e-08 8.75e-08 2.71e-09 9.23e-08
ENSG00000173064 HECTD4 492727 2.77e-07 1.92e-07 6.15e-08 2.41e-07 1.07e-07 8.45e-08 1.81e-07 6.12e-08 1.54e-07 8.53e-08 1.76e-07 1.08e-07 1.79e-07 8e-08 5.36e-08 9.01e-08 4.45e-08 1.77e-07 9.97e-08 6.29e-08 1.23e-07 1.56e-07 1.62e-07 3.68e-08 1.98e-07 1.31e-07 1.22e-07 1.12e-07 1.31e-07 1.17e-07 1.14e-07 3.93e-08 3.89e-08 8.89e-08 4.92e-08 3.3e-08 6.14e-08 9.23e-08 6.37e-08 4.41e-08 4.44e-08 2.15e-07 4.87e-08 2.04e-08 3.55e-08 1.89e-08 1.18e-07 3.8e-09 4.54e-08