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Genes within 1Mb (chr12:112874580:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 455742 sc-eQTL 3.21e-01 -0.108 0.109 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 -484913 sc-eQTL 6.42e-02 0.362 0.194 0.05 CD4_CTL L2
ENSG00000089127 OAS1 -32203 sc-eQTL 7.40e-01 -0.0583 0.175 0.05 CD4_CTL L2
ENSG00000089248 ERP29 861232 sc-eQTL 1.24e-01 -0.235 0.152 0.05 CD4_CTL L2
ENSG00000111300 NAA25 765784 sc-eQTL 9.26e-01 -0.0191 0.205 0.05 CD4_CTL L2
ENSG00000111331 OAS3 -63864 sc-eQTL 5.38e-01 -0.122 0.197 0.05 CD4_CTL L2
ENSG00000111335 OAS2 -103815 sc-eQTL 9.48e-01 0.0125 0.193 0.05 CD4_CTL L2
ENSG00000123064 DDX54 -310899 sc-eQTL 8.52e-01 0.037 0.198 0.05 CD4_CTL L2
ENSG00000135144 DTX1 -182129 sc-eQTL 2.60e-01 0.16 0.142 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 749042 sc-eQTL 7.10e-02 0.371 0.204 0.05 CD4_CTL L2
ENSG00000139405 RITA1 -310946 sc-eQTL 8.59e-01 0.0351 0.197 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 -483986 sc-eQTL 7.50e-01 0.0647 0.203 0.05 CD4_CTL L2
ENSG00000173064 HECTD4 492141 sc-eQTL 5.82e-01 0.0963 0.175 0.05 CD4_CTL L2
ENSG00000179295 PTPN11 456229 sc-eQTL 2.11e-01 -0.245 0.196 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 -346470 sc-eQTL 4.40e-01 -0.143 0.185 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 861395 sc-eQTL 7.67e-01 0.0609 0.205 0.05 CD4_CTL L2
ENSG00000089009 RPL6 455742 sc-eQTL 9.91e-01 -0.00109 0.0994 0.05 NK_HLA L2
ENSG00000089060 SLC8B1 -484913 sc-eQTL 8.11e-01 0.0454 0.19 0.05 NK_HLA L2
ENSG00000089127 OAS1 -32203 sc-eQTL 2.14e-01 0.208 0.167 0.05 NK_HLA L2
ENSG00000089248 ERP29 861232 sc-eQTL 9.57e-01 0.00936 0.174 0.05 NK_HLA L2
ENSG00000111300 NAA25 765784 sc-eQTL 5.61e-01 -0.116 0.199 0.05 NK_HLA L2
ENSG00000111331 OAS3 -63864 sc-eQTL 5.86e-01 -0.0952 0.175 0.05 NK_HLA L2
ENSG00000111335 OAS2 -103815 sc-eQTL 8.94e-01 0.0228 0.17 0.05 NK_HLA L2
ENSG00000123064 DDX54 -310899 sc-eQTL 5.25e-01 -0.132 0.207 0.05 NK_HLA L2
ENSG00000135148 TRAFD1 749042 sc-eQTL 9.42e-01 0.014 0.192 0.05 NK_HLA L2
ENSG00000139405 RITA1 -310946 sc-eQTL 4.48e-01 0.152 0.2 0.05 NK_HLA L2
ENSG00000151176 PLBD2 -483986 sc-eQTL 6.95e-01 -0.0776 0.198 0.05 NK_HLA L2
ENSG00000173064 HECTD4 492141 sc-eQTL 8.69e-01 -0.0296 0.179 0.05 NK_HLA L2
ENSG00000179295 PTPN11 456229 sc-eQTL 3.52e-01 -0.175 0.187 0.05 NK_HLA L2
ENSG00000198270 TMEM116 861395 sc-eQTL 2.70e-02 0.41 0.184 0.05 NK_HLA L2
ENSG00000089009 RPL6 455742 sc-eQTL 6.44e-01 -0.0482 0.104 0.058 gdT L2
ENSG00000089060 SLC8B1 -484913 sc-eQTL 6.11e-01 -0.102 0.199 0.058 gdT L2
ENSG00000089127 OAS1 -32203 sc-eQTL 2.79e-01 0.204 0.187 0.058 gdT L2
ENSG00000089248 ERP29 861232 sc-eQTL 1.67e-01 -0.266 0.192 0.058 gdT L2
ENSG00000111300 NAA25 765784 sc-eQTL 7.60e-01 0.0692 0.227 0.058 gdT L2
ENSG00000111331 OAS3 -63864 sc-eQTL 5.12e-01 0.139 0.211 0.058 gdT L2
ENSG00000111335 OAS2 -103815 sc-eQTL 6.92e-01 -0.0683 0.172 0.058 gdT L2
ENSG00000123064 DDX54 -310899 sc-eQTL 8.25e-01 0.0494 0.223 0.058 gdT L2
ENSG00000135144 DTX1 -182129 sc-eQTL 5.73e-01 0.0996 0.176 0.058 gdT L2
ENSG00000135148 TRAFD1 749042 sc-eQTL 2.22e-01 0.255 0.208 0.058 gdT L2
ENSG00000139405 RITA1 -310946 sc-eQTL 6.54e-01 0.101 0.226 0.058 gdT L2
ENSG00000151176 PLBD2 -483986 sc-eQTL 4.13e-01 0.164 0.2 0.058 gdT L2
ENSG00000173064 HECTD4 492141 sc-eQTL 3.40e-01 0.192 0.2 0.058 gdT L2
ENSG00000179295 PTPN11 456229 sc-eQTL 5.28e-01 -0.131 0.207 0.058 gdT L2
ENSG00000186815 TPCN1 -346470 sc-eQTL 7.17e-01 0.0743 0.204 0.058 gdT L2
ENSG00000198270 TMEM116 861395 sc-eQTL 1.76e-01 0.272 0.2 0.058 gdT L2
ENSG00000089009 RPL6 455742 sc-eQTL 5.46e-01 0.0684 0.113 0.056 pDC L2
ENSG00000089060 SLC8B1 -484913 sc-eQTL 2.77e-01 0.241 0.221 0.056 pDC L2
ENSG00000089127 OAS1 -32203 sc-eQTL 4.80e-01 0.102 0.145 0.056 pDC L2
ENSG00000089169 RPH3A 304200 sc-eQTL 6.66e-01 0.0715 0.165 0.056 pDC L2
ENSG00000089248 ERP29 861232 sc-eQTL 9.97e-01 -0.000471 0.136 0.056 pDC L2
ENSG00000111300 NAA25 765784 sc-eQTL 5.89e-01 0.109 0.201 0.056 pDC L2
ENSG00000111331 OAS3 -63864 sc-eQTL 7.57e-01 0.0539 0.174 0.056 pDC L2
ENSG00000111335 OAS2 -103815 sc-eQTL 6.46e-01 0.0857 0.186 0.056 pDC L2
ENSG00000123064 DDX54 -310899 sc-eQTL 8.07e-01 -0.0529 0.216 0.056 pDC L2
ENSG00000135094 SDS -551721 sc-eQTL 9.96e-01 -0.000718 0.156 0.056 pDC L2
ENSG00000135148 TRAFD1 749042 sc-eQTL 7.96e-01 -0.0555 0.214 0.056 pDC L2
ENSG00000139405 RITA1 -310946 sc-eQTL 5.96e-01 -0.115 0.217 0.056 pDC L2
ENSG00000139410 SDSL -547800 sc-eQTL 9.92e-01 -0.00217 0.213 0.056 pDC L2
ENSG00000151176 PLBD2 -483986 sc-eQTL 8.48e-01 -0.0428 0.223 0.056 pDC L2
ENSG00000166578 IQCD -346514 sc-eQTL 2.23e-01 0.208 0.17 0.056 pDC L2
ENSG00000173064 HECTD4 492141 sc-eQTL 8.06e-01 -0.0448 0.182 0.056 pDC L2
ENSG00000179295 PTPN11 456229 sc-eQTL 4.18e-01 0.169 0.208 0.056 pDC L2
ENSG00000186815 TPCN1 -346470 sc-eQTL 3.76e-02 -0.418 0.199 0.056 pDC L2
ENSG00000198270 TMEM116 861395 sc-eQTL 6.89e-01 -0.0833 0.207 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -484913 eQTL 0.0235 -0.16 0.0706 0.0 0.0 0.0299
ENSG00000089169 RPH3A 304200 eQTL 0.00114 0.288 0.0884 0.0 0.0 0.0299
ENSG00000111300 NAA25 765784 eQTL 0.0228 0.0814 0.0357 0.0 0.0 0.0299
ENSG00000173064 HECTD4 492141 eQTL 0.00145 -0.135 0.0423 0.0 0.0 0.0299

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089169 RPH3A 304200 1.27e-06 1.07e-06 2.57e-07 1.17e-06 3.57e-07 6.22e-07 1.63e-06 3.62e-07 1.5e-06 5.19e-07 1.84e-06 7e-07 2.34e-06 2.81e-07 5.22e-07 9.2e-07 9.2e-07 6.96e-07 8.48e-07 6.33e-07 6.66e-07 1.63e-06 8.66e-07 6.68e-07 2.26e-06 4.79e-07 9.41e-07 7.03e-07 1.31e-06 1.2e-06 7.41e-07 2.24e-07 2.14e-07 6.69e-07 5.38e-07 4.81e-07 6.37e-07 2.38e-07 4.8e-07 3.2e-07 2.73e-07 1.62e-06 8.26e-08 1.31e-07 1.45e-07 1.38e-07 2.2e-07 5.45e-08 1.09e-07
ENSG00000111300 NAA25 765784 2.77e-07 1.51e-07 5.91e-08 2.24e-07 1.03e-07 8.33e-08 1.9e-07 5.85e-08 1.54e-07 7.6e-08 1.63e-07 1.19e-07 2.13e-07 8.13e-08 5.69e-08 7.89e-08 4.18e-08 1.56e-07 7.18e-08 5.33e-08 1.22e-07 1.42e-07 1.62e-07 3.07e-08 2.02e-07 1.31e-07 1.17e-07 1.04e-07 1.26e-07 1.05e-07 1.14e-07 3.84e-08 3.51e-08 9.76e-08 3.07e-08 2.95e-08 3.91e-08 8.51e-08 6.21e-08 4.41e-08 5.48e-08 1.55e-07 5.24e-08 1.54e-08 3.2e-08 1.71e-08 9.29e-08 1.96e-09 4.82e-08
ENSG00000123064 \N -310899 1.27e-06 1.01e-06 2.74e-07 1.15e-06 3.37e-07 6.01e-07 1.59e-06 3.68e-07 1.49e-06 4.82e-07 1.79e-06 6.43e-07 2.29e-06 3e-07 5.23e-07 8.62e-07 8.9e-07 6.5e-07 7.7e-07 6.31e-07 6.36e-07 1.6e-06 8.53e-07 6.51e-07 2.21e-06 4.27e-07 8.98e-07 7.01e-07 1.28e-06 1.23e-06 6.78e-07 2.07e-07 2.29e-07 6.95e-07 5.85e-07 4.67e-07 6.25e-07 2.31e-07 4.94e-07 2.5e-07 2.56e-07 1.58e-06 5.04e-08 1.3e-07 1.75e-07 1.24e-07 2.35e-07 5.28e-08 1.05e-07
ENSG00000173064 HECTD4 492141 7.3e-07 5.7e-07 1.11e-07 3.95e-07 9.72e-08 2.09e-07 5.28e-07 1.11e-07 4.18e-07 2.28e-07 6.39e-07 3.48e-07 7.71e-07 1.17e-07 1.9e-07 2.14e-07 2.77e-07 3.58e-07 1.93e-07 1.51e-07 1.92e-07 3.71e-07 3.3e-07 1.34e-07 7.94e-07 2.34e-07 2.52e-07 2.44e-07 3e-07 5.82e-07 3.1e-07 6.42e-08 5.73e-08 1.36e-07 3e-07 7.56e-08 8.28e-08 7.93e-08 6.58e-08 3.01e-08 7.16e-08 5.87e-07 1.67e-08 1.21e-08 1.08e-07 1.22e-08 8.24e-08 1.15e-08 5.05e-08