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Genes within 1Mb (chr12:112871964:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 453126 sc-eQTL 2.93e-01 -0.112 0.107 0.052 CD4_CTL L2
ENSG00000089060 SLC8B1 -487529 sc-eQTL 3.59e-02 0.402 0.19 0.052 CD4_CTL L2
ENSG00000089127 OAS1 -34819 sc-eQTL 9.24e-01 -0.0164 0.172 0.052 CD4_CTL L2
ENSG00000089248 ERP29 858616 sc-eQTL 1.60e-01 -0.211 0.15 0.052 CD4_CTL L2
ENSG00000111300 NAA25 763168 sc-eQTL 9.89e-01 -0.00266 0.201 0.052 CD4_CTL L2
ENSG00000111331 OAS3 -66480 sc-eQTL 4.87e-01 -0.135 0.193 0.052 CD4_CTL L2
ENSG00000111335 OAS2 -106431 sc-eQTL 7.12e-01 0.07 0.189 0.052 CD4_CTL L2
ENSG00000123064 DDX54 -313515 sc-eQTL 5.43e-01 0.118 0.194 0.052 CD4_CTL L2
ENSG00000135144 DTX1 -184745 sc-eQTL 3.28e-01 0.137 0.139 0.052 CD4_CTL L2
ENSG00000135148 TRAFD1 746426 sc-eQTL 1.23e-01 0.312 0.201 0.052 CD4_CTL L2
ENSG00000139405 RITA1 -313562 sc-eQTL 9.28e-01 0.0174 0.194 0.052 CD4_CTL L2
ENSG00000151176 PLBD2 -486602 sc-eQTL 6.02e-01 0.104 0.199 0.052 CD4_CTL L2
ENSG00000173064 HECTD4 489525 sc-eQTL 4.32e-01 0.135 0.171 0.052 CD4_CTL L2
ENSG00000179295 PTPN11 453613 sc-eQTL 1.72e-01 -0.263 0.192 0.052 CD4_CTL L2
ENSG00000186815 TPCN1 -349086 sc-eQTL 3.07e-01 -0.186 0.182 0.052 CD4_CTL L2
ENSG00000198270 TMEM116 858779 sc-eQTL 6.63e-01 0.0878 0.201 0.052 CD4_CTL L2
ENSG00000089009 RPL6 453126 sc-eQTL 2.99e-01 0.123 0.118 0.051 CD8_TCM L2
ENSG00000089060 SLC8B1 -487529 sc-eQTL 7.58e-01 -0.0598 0.194 0.051 CD8_TCM L2
ENSG00000089127 OAS1 -34819 sc-eQTL 8.15e-01 -0.0396 0.169 0.051 CD8_TCM L2
ENSG00000089248 ERP29 858616 sc-eQTL 6.17e-01 -0.0918 0.183 0.051 CD8_TCM L2
ENSG00000111300 NAA25 763168 sc-eQTL 3.22e-01 0.192 0.193 0.051 CD8_TCM L2
ENSG00000111331 OAS3 -66480 sc-eQTL 2.27e-01 0.242 0.2 0.051 CD8_TCM L2
ENSG00000111335 OAS2 -106431 sc-eQTL 6.74e-01 0.0691 0.164 0.051 CD8_TCM L2
ENSG00000123064 DDX54 -313515 sc-eQTL 9.77e-01 -0.00629 0.213 0.051 CD8_TCM L2
ENSG00000135148 TRAFD1 746426 sc-eQTL 6.31e-01 0.097 0.201 0.051 CD8_TCM L2
ENSG00000139405 RITA1 -313562 sc-eQTL 5.32e-01 -0.126 0.201 0.051 CD8_TCM L2
ENSG00000151176 PLBD2 -486602 sc-eQTL 3.94e-01 0.175 0.205 0.051 CD8_TCM L2
ENSG00000173064 HECTD4 489525 sc-eQTL 1.70e-01 -0.229 0.166 0.051 CD8_TCM L2
ENSG00000179295 PTPN11 453613 sc-eQTL 1.71e-01 -0.26 0.189 0.051 CD8_TCM L2
ENSG00000186815 TPCN1 -349086 sc-eQTL 8.04e-01 -0.0501 0.202 0.051 CD8_TCM L2
ENSG00000198270 TMEM116 858779 sc-eQTL 8.19e-01 -0.048 0.209 0.051 CD8_TCM L2
ENSG00000089009 RPL6 453126 sc-eQTL 1.56e-01 0.179 0.126 0.05 CD8_TEM L2
ENSG00000089060 SLC8B1 -487529 sc-eQTL 9.35e-01 0.0161 0.199 0.05 CD8_TEM L2
ENSG00000089127 OAS1 -34819 sc-eQTL 8.40e-01 0.0318 0.157 0.05 CD8_TEM L2
ENSG00000089248 ERP29 858616 sc-eQTL 3.17e-01 0.164 0.163 0.05 CD8_TEM L2
ENSG00000111300 NAA25 763168 sc-eQTL 2.85e-01 0.205 0.192 0.05 CD8_TEM L2
ENSG00000111331 OAS3 -66480 sc-eQTL 7.63e-02 -0.304 0.17 0.05 CD8_TEM L2
ENSG00000111335 OAS2 -106431 sc-eQTL 7.96e-01 0.0386 0.149 0.05 CD8_TEM L2
ENSG00000123064 DDX54 -313515 sc-eQTL 2.74e-02 0.452 0.203 0.05 CD8_TEM L2
ENSG00000135148 TRAFD1 746426 sc-eQTL 3.91e-01 0.164 0.191 0.05 CD8_TEM L2
ENSG00000139405 RITA1 -313562 sc-eQTL 5.52e-02 -0.359 0.186 0.05 CD8_TEM L2
ENSG00000151176 PLBD2 -486602 sc-eQTL 5.29e-01 0.129 0.205 0.05 CD8_TEM L2
ENSG00000173064 HECTD4 489525 sc-eQTL 5.67e-01 -0.104 0.181 0.05 CD8_TEM L2
ENSG00000179295 PTPN11 453613 sc-eQTL 8.79e-01 -0.0301 0.198 0.05 CD8_TEM L2
ENSG00000186815 TPCN1 -349086 sc-eQTL 1.74e-01 -0.267 0.196 0.05 CD8_TEM L2
ENSG00000198270 TMEM116 858779 sc-eQTL 5.12e-01 0.132 0.2 0.05 CD8_TEM L2
ENSG00000089009 RPL6 453126 sc-eQTL 4.86e-01 0.0785 0.112 0.051 NK_CD56bright L2
ENSG00000089060 SLC8B1 -487529 sc-eQTL 1.01e-01 -0.32 0.194 0.051 NK_CD56bright L2
ENSG00000089127 OAS1 -34819 sc-eQTL 8.28e-01 0.0338 0.155 0.051 NK_CD56bright L2
ENSG00000089248 ERP29 858616 sc-eQTL 6.98e-01 -0.0693 0.178 0.051 NK_CD56bright L2
ENSG00000111300 NAA25 763168 sc-eQTL 7.07e-02 -0.33 0.181 0.051 NK_CD56bright L2
ENSG00000111331 OAS3 -66480 sc-eQTL 7.26e-01 0.0579 0.165 0.051 NK_CD56bright L2
ENSG00000111335 OAS2 -106431 sc-eQTL 3.87e-01 -0.126 0.146 0.051 NK_CD56bright L2
ENSG00000123064 DDX54 -313515 sc-eQTL 3.36e-01 0.192 0.199 0.051 NK_CD56bright L2
ENSG00000135148 TRAFD1 746426 sc-eQTL 3.15e-01 0.183 0.181 0.051 NK_CD56bright L2
ENSG00000139405 RITA1 -313562 sc-eQTL 9.96e-01 0.0011 0.201 0.051 NK_CD56bright L2
ENSG00000151176 PLBD2 -486602 sc-eQTL 9.77e-01 -0.00589 0.2 0.051 NK_CD56bright L2
ENSG00000173064 HECTD4 489525 sc-eQTL 4.31e-01 0.128 0.162 0.051 NK_CD56bright L2
ENSG00000179295 PTPN11 453613 sc-eQTL 7.32e-01 0.0611 0.178 0.051 NK_CD56bright L2
ENSG00000198270 TMEM116 858779 sc-eQTL 1.09e-01 0.317 0.196 0.051 NK_CD56bright L2
ENSG00000089009 RPL6 453126 sc-eQTL 9.03e-01 -0.012 0.098 0.053 NK_HLA L2
ENSG00000089060 SLC8B1 -487529 sc-eQTL 7.44e-01 0.0614 0.187 0.053 NK_HLA L2
ENSG00000089127 OAS1 -34819 sc-eQTL 1.42e-01 0.243 0.164 0.053 NK_HLA L2
ENSG00000089248 ERP29 858616 sc-eQTL 9.08e-01 0.0199 0.171 0.053 NK_HLA L2
ENSG00000111300 NAA25 763168 sc-eQTL 5.22e-01 -0.126 0.196 0.053 NK_HLA L2
ENSG00000111331 OAS3 -66480 sc-eQTL 5.72e-01 -0.0976 0.172 0.053 NK_HLA L2
ENSG00000111335 OAS2 -106431 sc-eQTL 9.06e-01 0.0198 0.168 0.053 NK_HLA L2
ENSG00000123064 DDX54 -313515 sc-eQTL 5.47e-01 -0.123 0.204 0.053 NK_HLA L2
ENSG00000135148 TRAFD1 746426 sc-eQTL 8.84e-01 0.0276 0.19 0.053 NK_HLA L2
ENSG00000139405 RITA1 -313562 sc-eQTL 4.41e-01 0.152 0.197 0.053 NK_HLA L2
ENSG00000151176 PLBD2 -486602 sc-eQTL 7.44e-01 -0.0636 0.195 0.053 NK_HLA L2
ENSG00000173064 HECTD4 489525 sc-eQTL 7.48e-01 -0.0568 0.177 0.053 NK_HLA L2
ENSG00000179295 PTPN11 453613 sc-eQTL 2.08e-01 -0.233 0.184 0.053 NK_HLA L2
ENSG00000198270 TMEM116 858779 sc-eQTL 1.87e-02 0.43 0.181 0.053 NK_HLA L2
ENSG00000089009 RPL6 453126 sc-eQTL 4.34e-01 -0.0798 0.102 0.061 gdT L2
ENSG00000089060 SLC8B1 -487529 sc-eQTL 3.94e-01 -0.166 0.195 0.061 gdT L2
ENSG00000089127 OAS1 -34819 sc-eQTL 5.88e-01 0.1 0.184 0.061 gdT L2
ENSG00000089248 ERP29 858616 sc-eQTL 2.08e-01 -0.238 0.188 0.061 gdT L2
ENSG00000111300 NAA25 763168 sc-eQTL 8.28e-01 0.0482 0.222 0.061 gdT L2
ENSG00000111331 OAS3 -66480 sc-eQTL 3.52e-01 0.193 0.207 0.061 gdT L2
ENSG00000111335 OAS2 -106431 sc-eQTL 6.12e-01 -0.0858 0.169 0.061 gdT L2
ENSG00000123064 DDX54 -313515 sc-eQTL 8.92e-01 -0.0297 0.218 0.061 gdT L2
ENSG00000135144 DTX1 -184745 sc-eQTL 7.16e-01 0.0629 0.173 0.061 gdT L2
ENSG00000135148 TRAFD1 746426 sc-eQTL 3.51e-01 0.191 0.204 0.061 gdT L2
ENSG00000139405 RITA1 -313562 sc-eQTL 5.52e-01 0.132 0.221 0.061 gdT L2
ENSG00000151176 PLBD2 -486602 sc-eQTL 2.75e-01 0.215 0.196 0.061 gdT L2
ENSG00000173064 HECTD4 489525 sc-eQTL 3.85e-01 0.171 0.196 0.061 gdT L2
ENSG00000179295 PTPN11 453613 sc-eQTL 5.94e-01 -0.108 0.203 0.061 gdT L2
ENSG00000186815 TPCN1 -349086 sc-eQTL 9.78e-01 0.00546 0.2 0.061 gdT L2
ENSG00000198270 TMEM116 858779 sc-eQTL 2.13e-01 0.245 0.196 0.061 gdT L2
ENSG00000089009 RPL6 453126 sc-eQTL 9.14e-01 -0.00985 0.0909 0.052 ncMono L2
ENSG00000089060 SLC8B1 -487529 sc-eQTL 9.17e-01 -0.0179 0.171 0.052 ncMono L2
ENSG00000089127 OAS1 -34819 sc-eQTL 3.01e-01 -0.0993 0.0958 0.052 ncMono L2
ENSG00000089169 RPH3A 301584 sc-eQTL 4.58e-01 -0.121 0.163 0.052 ncMono L2
ENSG00000089248 ERP29 858616 sc-eQTL 8.58e-01 0.0293 0.164 0.052 ncMono L2
ENSG00000111300 NAA25 763168 sc-eQTL 3.68e-01 0.182 0.202 0.052 ncMono L2
ENSG00000111331 OAS3 -66480 sc-eQTL 1.07e-01 -0.231 0.143 0.052 ncMono L2
ENSG00000111335 OAS2 -106431 sc-eQTL 7.92e-02 -0.244 0.138 0.052 ncMono L2
ENSG00000123064 DDX54 -313515 sc-eQTL 5.04e-01 -0.12 0.18 0.052 ncMono L2
ENSG00000135148 TRAFD1 746426 sc-eQTL 2.40e-01 -0.17 0.144 0.052 ncMono L2
ENSG00000139405 RITA1 -313562 sc-eQTL 3.58e-01 -0.188 0.204 0.052 ncMono L2
ENSG00000139410 SDSL -550416 sc-eQTL 5.93e-01 -0.0901 0.168 0.052 ncMono L2
ENSG00000151176 PLBD2 -486602 sc-eQTL 4.44e-01 -0.135 0.176 0.052 ncMono L2
ENSG00000173064 HECTD4 489525 sc-eQTL 8.75e-01 0.0246 0.156 0.052 ncMono L2
ENSG00000179295 PTPN11 453613 sc-eQTL 5.65e-01 -0.115 0.199 0.052 ncMono L2
ENSG00000186815 TPCN1 -349086 sc-eQTL 7.48e-01 -0.0503 0.156 0.052 ncMono L2
ENSG00000198270 TMEM116 858779 sc-eQTL 3.52e-01 -0.179 0.192 0.052 ncMono L2
ENSG00000089009 RPL6 453126 sc-eQTL 4.31e-01 0.0879 0.111 0.059 pDC L2
ENSG00000089060 SLC8B1 -487529 sc-eQTL 3.23e-01 0.216 0.218 0.059 pDC L2
ENSG00000089127 OAS1 -34819 sc-eQTL 6.38e-01 0.0672 0.142 0.059 pDC L2
ENSG00000089169 RPH3A 301584 sc-eQTL 7.95e-01 0.0425 0.163 0.059 pDC L2
ENSG00000089248 ERP29 858616 sc-eQTL 8.52e-01 0.025 0.134 0.059 pDC L2
ENSG00000111300 NAA25 763168 sc-eQTL 9.95e-01 -0.00115 0.198 0.059 pDC L2
ENSG00000111331 OAS3 -66480 sc-eQTL 6.45e-01 0.0792 0.171 0.059 pDC L2
ENSG00000111335 OAS2 -106431 sc-eQTL 9.71e-01 0.00662 0.183 0.059 pDC L2
ENSG00000123064 DDX54 -313515 sc-eQTL 9.70e-01 -0.00801 0.212 0.059 pDC L2
ENSG00000135094 SDS -554337 sc-eQTL 8.62e-01 -0.0268 0.154 0.059 pDC L2
ENSG00000135148 TRAFD1 746426 sc-eQTL 6.69e-01 -0.0904 0.211 0.059 pDC L2
ENSG00000139405 RITA1 -313562 sc-eQTL 4.92e-01 -0.147 0.214 0.059 pDC L2
ENSG00000139410 SDSL -550416 sc-eQTL 6.95e-01 -0.0824 0.21 0.059 pDC L2
ENSG00000151176 PLBD2 -486602 sc-eQTL 5.75e-01 -0.123 0.22 0.059 pDC L2
ENSG00000166578 IQCD -349130 sc-eQTL 3.46e-01 0.159 0.168 0.059 pDC L2
ENSG00000173064 HECTD4 489525 sc-eQTL 8.35e-01 -0.0375 0.179 0.059 pDC L2
ENSG00000179295 PTPN11 453613 sc-eQTL 4.36e-01 0.16 0.205 0.059 pDC L2
ENSG00000186815 TPCN1 -349086 sc-eQTL 6.41e-02 -0.367 0.197 0.059 pDC L2
ENSG00000198270 TMEM116 858779 sc-eQTL 8.55e-01 -0.0374 0.204 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -487529 eQTL 0.0225 -0.157 0.0688 0.0 0.0 0.0319
ENSG00000089169 RPH3A 301584 eQTL 0.00121 0.28 0.0862 0.0 0.0 0.0319
ENSG00000111300 NAA25 763168 eQTL 0.0315 0.075 0.0348 0.0 0.0 0.0319
ENSG00000173064 HECTD4 489525 eQTL 0.00424 -0.118 0.0413 0.0 0.0 0.0319
ENSG00000186815 TPCN1 -349086 eQTL 0.0482 0.0857 0.0433 0.0 0.0 0.0319

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089169 RPH3A 301584 1.26e-06 1.01e-06 3.45e-07 6.75e-07 3.46e-07 4.82e-07 1.34e-06 3.57e-07 1.41e-06 4.44e-07 1.49e-06 6.2e-07 2.02e-06 2.83e-07 5.65e-07 8.35e-07 8.25e-07 6.21e-07 7.7e-07 6.9e-07 5.66e-07 1.35e-06 8.93e-07 6.44e-07 2.05e-06 4.79e-07 7.66e-07 7.2e-07 1.28e-06 1.36e-06 6.16e-07 1.85e-07 2.29e-07 6.95e-07 4.4e-07 4.5e-07 5.19e-07 1.66e-07 3.78e-07 2.48e-07 2.57e-07 1.49e-06 5.81e-08 6.48e-08 2.16e-07 1.22e-07 2.3e-07 8.93e-08 1.23e-07
ENSG00000111300 NAA25 763168 2.91e-07 1.42e-07 5.91e-08 2.05e-07 9.82e-08 8.21e-08 1.9e-07 5.56e-08 1.44e-07 7.6e-08 1.62e-07 1.2e-07 1.95e-07 7.95e-08 5.94e-08 7.89e-08 4.31e-08 1.64e-07 7.09e-08 5.07e-08 1.27e-07 1.39e-07 1.58e-07 3.4e-08 1.72e-07 1.31e-07 1.17e-07 1.04e-07 1.34e-07 1.1e-07 1.06e-07 3.66e-08 3.59e-08 9.52e-08 3.46e-08 3.22e-08 5.51e-08 8.89e-08 6.39e-08 4.08e-08 5.44e-08 1.5e-07 5.39e-08 7.39e-09 3.07e-08 1.8e-08 8.81e-08 1.91e-09 4.85e-08
ENSG00000123064 \N -313515 1.34e-06 9.39e-07 3.48e-07 5.88e-07 3.09e-07 4.63e-07 1.21e-06 3.54e-07 1.25e-06 4.24e-07 1.41e-06 5.98e-07 1.91e-06 2.55e-07 4.48e-07 8.27e-07 8e-07 5.82e-07 6.96e-07 6.8e-07 4.48e-07 1.22e-06 8.96e-07 6.37e-07 1.94e-06 4.33e-07 7.06e-07 6.51e-07 1.23e-06 1.28e-06 5.48e-07 1.55e-07 2.29e-07 5.78e-07 4.17e-07 4.47e-07 4.75e-07 1.57e-07 3.6e-07 1.54e-07 2.99e-07 1.57e-06 5.53e-08 5.67e-08 1.67e-07 9.77e-08 2.38e-07 8.37e-08 1.08e-07
ENSG00000173064 HECTD4 489525 7.23e-07 4.24e-07 1.02e-07 3.57e-07 9.26e-08 1.71e-07 4.93e-07 1.31e-07 3.66e-07 2.16e-07 4.97e-07 3.3e-07 6.27e-07 1.07e-07 1.57e-07 2.08e-07 2.53e-07 3.58e-07 1.93e-07 1.28e-07 1.86e-07 3.34e-07 3.04e-07 1.36e-07 6.18e-07 2.34e-07 2.24e-07 2.01e-07 3.27e-07 5.28e-07 2.43e-07 7.5e-08 5.48e-08 1.37e-07 2.32e-07 7.56e-08 1.14e-07 7.98e-08 6.29e-08 5.77e-08 4.67e-08 4.04e-07 2.16e-08 1.9e-08 1.23e-07 1.75e-08 8.13e-08 3.2e-09 5.43e-08