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Genes within 1Mb (chr12:112870461:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 451623 sc-eQTL 3.21e-01 -0.108 0.109 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 -489032 sc-eQTL 6.42e-02 0.362 0.194 0.05 CD4_CTL L2
ENSG00000089127 OAS1 -36322 sc-eQTL 7.40e-01 -0.0583 0.175 0.05 CD4_CTL L2
ENSG00000089248 ERP29 857113 sc-eQTL 1.24e-01 -0.235 0.152 0.05 CD4_CTL L2
ENSG00000111300 NAA25 761665 sc-eQTL 9.26e-01 -0.0191 0.205 0.05 CD4_CTL L2
ENSG00000111331 OAS3 -67983 sc-eQTL 5.38e-01 -0.122 0.197 0.05 CD4_CTL L2
ENSG00000111335 OAS2 -107934 sc-eQTL 9.48e-01 0.0125 0.193 0.05 CD4_CTL L2
ENSG00000123064 DDX54 -315018 sc-eQTL 8.52e-01 0.037 0.198 0.05 CD4_CTL L2
ENSG00000135144 DTX1 -186248 sc-eQTL 2.60e-01 0.16 0.142 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 744923 sc-eQTL 7.10e-02 0.371 0.204 0.05 CD4_CTL L2
ENSG00000139405 RITA1 -315065 sc-eQTL 8.59e-01 0.0351 0.197 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 -488105 sc-eQTL 7.50e-01 0.0647 0.203 0.05 CD4_CTL L2
ENSG00000173064 HECTD4 488022 sc-eQTL 5.82e-01 0.0963 0.175 0.05 CD4_CTL L2
ENSG00000179295 PTPN11 452110 sc-eQTL 2.11e-01 -0.245 0.196 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 -350589 sc-eQTL 4.40e-01 -0.143 0.185 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 857276 sc-eQTL 7.67e-01 0.0609 0.205 0.05 CD4_CTL L2
ENSG00000089009 RPL6 451623 sc-eQTL 9.91e-01 -0.00109 0.0994 0.05 NK_HLA L2
ENSG00000089060 SLC8B1 -489032 sc-eQTL 8.11e-01 0.0454 0.19 0.05 NK_HLA L2
ENSG00000089127 OAS1 -36322 sc-eQTL 2.14e-01 0.208 0.167 0.05 NK_HLA L2
ENSG00000089248 ERP29 857113 sc-eQTL 9.57e-01 0.00936 0.174 0.05 NK_HLA L2
ENSG00000111300 NAA25 761665 sc-eQTL 5.61e-01 -0.116 0.199 0.05 NK_HLA L2
ENSG00000111331 OAS3 -67983 sc-eQTL 5.86e-01 -0.0952 0.175 0.05 NK_HLA L2
ENSG00000111335 OAS2 -107934 sc-eQTL 8.94e-01 0.0228 0.17 0.05 NK_HLA L2
ENSG00000123064 DDX54 -315018 sc-eQTL 5.25e-01 -0.132 0.207 0.05 NK_HLA L2
ENSG00000135148 TRAFD1 744923 sc-eQTL 9.42e-01 0.014 0.192 0.05 NK_HLA L2
ENSG00000139405 RITA1 -315065 sc-eQTL 4.48e-01 0.152 0.2 0.05 NK_HLA L2
ENSG00000151176 PLBD2 -488105 sc-eQTL 6.95e-01 -0.0776 0.198 0.05 NK_HLA L2
ENSG00000173064 HECTD4 488022 sc-eQTL 8.69e-01 -0.0296 0.179 0.05 NK_HLA L2
ENSG00000179295 PTPN11 452110 sc-eQTL 3.52e-01 -0.175 0.187 0.05 NK_HLA L2
ENSG00000198270 TMEM116 857276 sc-eQTL 2.70e-02 0.41 0.184 0.05 NK_HLA L2
ENSG00000089009 RPL6 451623 sc-eQTL 6.44e-01 -0.0482 0.104 0.058 gdT L2
ENSG00000089060 SLC8B1 -489032 sc-eQTL 6.11e-01 -0.102 0.199 0.058 gdT L2
ENSG00000089127 OAS1 -36322 sc-eQTL 2.79e-01 0.204 0.187 0.058 gdT L2
ENSG00000089248 ERP29 857113 sc-eQTL 1.67e-01 -0.266 0.192 0.058 gdT L2
ENSG00000111300 NAA25 761665 sc-eQTL 7.60e-01 0.0692 0.227 0.058 gdT L2
ENSG00000111331 OAS3 -67983 sc-eQTL 5.12e-01 0.139 0.211 0.058 gdT L2
ENSG00000111335 OAS2 -107934 sc-eQTL 6.92e-01 -0.0683 0.172 0.058 gdT L2
ENSG00000123064 DDX54 -315018 sc-eQTL 8.25e-01 0.0494 0.223 0.058 gdT L2
ENSG00000135144 DTX1 -186248 sc-eQTL 5.73e-01 0.0996 0.176 0.058 gdT L2
ENSG00000135148 TRAFD1 744923 sc-eQTL 2.22e-01 0.255 0.208 0.058 gdT L2
ENSG00000139405 RITA1 -315065 sc-eQTL 6.54e-01 0.101 0.226 0.058 gdT L2
ENSG00000151176 PLBD2 -488105 sc-eQTL 4.13e-01 0.164 0.2 0.058 gdT L2
ENSG00000173064 HECTD4 488022 sc-eQTL 3.40e-01 0.192 0.2 0.058 gdT L2
ENSG00000179295 PTPN11 452110 sc-eQTL 5.28e-01 -0.131 0.207 0.058 gdT L2
ENSG00000186815 TPCN1 -350589 sc-eQTL 7.17e-01 0.0743 0.204 0.058 gdT L2
ENSG00000198270 TMEM116 857276 sc-eQTL 1.76e-01 0.272 0.2 0.058 gdT L2
ENSG00000089009 RPL6 451623 sc-eQTL 5.46e-01 0.0684 0.113 0.056 pDC L2
ENSG00000089060 SLC8B1 -489032 sc-eQTL 2.77e-01 0.241 0.221 0.056 pDC L2
ENSG00000089127 OAS1 -36322 sc-eQTL 4.80e-01 0.102 0.145 0.056 pDC L2
ENSG00000089169 RPH3A 300081 sc-eQTL 6.66e-01 0.0715 0.165 0.056 pDC L2
ENSG00000089248 ERP29 857113 sc-eQTL 9.97e-01 -0.000471 0.136 0.056 pDC L2
ENSG00000111300 NAA25 761665 sc-eQTL 5.89e-01 0.109 0.201 0.056 pDC L2
ENSG00000111331 OAS3 -67983 sc-eQTL 7.57e-01 0.0539 0.174 0.056 pDC L2
ENSG00000111335 OAS2 -107934 sc-eQTL 6.46e-01 0.0857 0.186 0.056 pDC L2
ENSG00000123064 DDX54 -315018 sc-eQTL 8.07e-01 -0.0529 0.216 0.056 pDC L2
ENSG00000135094 SDS -555840 sc-eQTL 9.96e-01 -0.000718 0.156 0.056 pDC L2
ENSG00000135148 TRAFD1 744923 sc-eQTL 7.96e-01 -0.0555 0.214 0.056 pDC L2
ENSG00000139405 RITA1 -315065 sc-eQTL 5.96e-01 -0.115 0.217 0.056 pDC L2
ENSG00000139410 SDSL -551919 sc-eQTL 9.92e-01 -0.00217 0.213 0.056 pDC L2
ENSG00000151176 PLBD2 -488105 sc-eQTL 8.48e-01 -0.0428 0.223 0.056 pDC L2
ENSG00000166578 IQCD -350633 sc-eQTL 2.23e-01 0.208 0.17 0.056 pDC L2
ENSG00000173064 HECTD4 488022 sc-eQTL 8.06e-01 -0.0448 0.182 0.056 pDC L2
ENSG00000179295 PTPN11 452110 sc-eQTL 4.18e-01 0.169 0.208 0.056 pDC L2
ENSG00000186815 TPCN1 -350589 sc-eQTL 3.76e-02 -0.418 0.199 0.056 pDC L2
ENSG00000198270 TMEM116 857276 sc-eQTL 6.89e-01 -0.0833 0.207 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -489032 eQTL 0.0235 -0.16 0.0706 0.0 0.0 0.0299
ENSG00000089169 RPH3A 300081 eQTL 0.00114 0.288 0.0884 0.0 0.0 0.0299
ENSG00000111300 NAA25 761665 eQTL 0.0228 0.0814 0.0357 0.0 0.0 0.0299
ENSG00000173064 HECTD4 488022 eQTL 0.00145 -0.135 0.0423 0.0 0.0 0.0299

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089169 RPH3A 300081 1.29e-06 9.28e-07 3e-07 4.37e-07 2.05e-07 4.39e-07 1.08e-06 3.45e-07 1.14e-06 3.82e-07 1.26e-06 5.76e-07 1.54e-06 2.54e-07 4.41e-07 6.22e-07 7.73e-07 5.54e-07 4.49e-07 4.95e-07 3.39e-07 9.46e-07 7.95e-07 5.4e-07 1.85e-06 2.99e-07 6.21e-07 4.96e-07 9.81e-07 1e-06 5.23e-07 4.87e-08 1.81e-07 4.29e-07 3.96e-07 3.47e-07 3.79e-07 1.58e-07 1.49e-07 7.62e-08 2.79e-07 1.26e-06 5.33e-08 2.65e-08 1.81e-07 7.09e-08 1.6e-07 8.97e-08 8.09e-08
ENSG00000111300 NAA25 761665 2.77e-07 1.35e-07 5.35e-08 1.89e-07 1.01e-07 9.05e-08 1.67e-07 5.43e-08 1.45e-07 6.08e-08 1.57e-07 1.05e-07 1.59e-07 7.37e-08 6.25e-08 7.23e-08 4.24e-08 1.44e-07 6.32e-08 4.89e-08 1.26e-07 1.26e-07 1.5e-07 3.17e-08 1.63e-07 1.22e-07 1.13e-07 9.74e-08 1.24e-07 1e-07 1.06e-07 3.54e-08 3.51e-08 8.56e-08 4.92e-08 2.99e-08 5.3e-08 8.72e-08 6.57e-08 3.75e-08 5.48e-08 1.46e-07 5.08e-08 1.24e-08 3.2e-08 1.87e-08 1.2e-07 1.89e-09 5e-08
ENSG00000123064 \N -315018 1.26e-06 9.09e-07 2.62e-07 3.55e-07 1.64e-07 3.69e-07 9.43e-07 2.88e-07 9.42e-07 3.11e-07 1.15e-06 5.95e-07 1.43e-06 2.09e-07 4.26e-07 5.29e-07 7.76e-07 5.53e-07 3.98e-07 4.25e-07 2.8e-07 7.21e-07 6.63e-07 4.83e-07 1.69e-06 2.8e-07 5.83e-07 4.77e-07 8.56e-07 9.2e-07 4.54e-07 3.72e-08 1.49e-07 3.51e-07 3.42e-07 2.99e-07 2.98e-07 1.39e-07 1.56e-07 4.07e-08 2.82e-07 1.12e-06 6.64e-08 1.92e-08 1.92e-07 4.57e-08 1.9e-07 8.41e-08 5.63e-08
ENSG00000173064 HECTD4 488022 6.33e-07 2.88e-07 7.97e-08 2.79e-07 1.09e-07 1.5e-07 4.05e-07 8.17e-08 2.56e-07 1.5e-07 3.25e-07 2.11e-07 4.27e-07 8.85e-08 1.12e-07 1.46e-07 1.17e-07 2.96e-07 9.97e-08 8.1e-08 1.6e-07 2.45e-07 2.63e-07 1.03e-07 4.11e-07 2.13e-07 1.83e-07 1.68e-07 2.31e-07 2.39e-07 1.86e-07 7.91e-08 5.64e-08 1.21e-07 1.56e-07 5.51e-08 7.52e-08 6.2e-08 5.7e-08 7.39e-08 5.56e-08 2.74e-07 1.6e-08 2.07e-08 9.79e-08 8.59e-09 1.03e-07 2.75e-09 4.82e-08