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Genes within 1Mb (chr12:112866109:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 447271 sc-eQTL 3.21e-01 -0.108 0.109 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 -493384 sc-eQTL 6.42e-02 0.362 0.194 0.05 CD4_CTL L2
ENSG00000089127 OAS1 -40674 sc-eQTL 7.40e-01 -0.0583 0.175 0.05 CD4_CTL L2
ENSG00000089248 ERP29 852761 sc-eQTL 1.24e-01 -0.235 0.152 0.05 CD4_CTL L2
ENSG00000111300 NAA25 757313 sc-eQTL 9.26e-01 -0.0191 0.205 0.05 CD4_CTL L2
ENSG00000111331 OAS3 -72335 sc-eQTL 5.38e-01 -0.122 0.197 0.05 CD4_CTL L2
ENSG00000111335 OAS2 -112286 sc-eQTL 9.48e-01 0.0125 0.193 0.05 CD4_CTL L2
ENSG00000123064 DDX54 -319370 sc-eQTL 8.52e-01 0.037 0.198 0.05 CD4_CTL L2
ENSG00000135144 DTX1 -190600 sc-eQTL 2.60e-01 0.16 0.142 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 740571 sc-eQTL 7.10e-02 0.371 0.204 0.05 CD4_CTL L2
ENSG00000139405 RITA1 -319417 sc-eQTL 8.59e-01 0.0351 0.197 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 -492457 sc-eQTL 7.50e-01 0.0647 0.203 0.05 CD4_CTL L2
ENSG00000173064 HECTD4 483670 sc-eQTL 5.82e-01 0.0963 0.175 0.05 CD4_CTL L2
ENSG00000179295 PTPN11 447758 sc-eQTL 2.11e-01 -0.245 0.196 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 -354941 sc-eQTL 4.40e-01 -0.143 0.185 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 852924 sc-eQTL 7.67e-01 0.0609 0.205 0.05 CD4_CTL L2
ENSG00000089009 RPL6 447271 sc-eQTL 9.91e-01 -0.00109 0.0994 0.05 NK_HLA L2
ENSG00000089060 SLC8B1 -493384 sc-eQTL 8.11e-01 0.0454 0.19 0.05 NK_HLA L2
ENSG00000089127 OAS1 -40674 sc-eQTL 2.14e-01 0.208 0.167 0.05 NK_HLA L2
ENSG00000089248 ERP29 852761 sc-eQTL 9.57e-01 0.00936 0.174 0.05 NK_HLA L2
ENSG00000111300 NAA25 757313 sc-eQTL 5.61e-01 -0.116 0.199 0.05 NK_HLA L2
ENSG00000111331 OAS3 -72335 sc-eQTL 5.86e-01 -0.0952 0.175 0.05 NK_HLA L2
ENSG00000111335 OAS2 -112286 sc-eQTL 8.94e-01 0.0228 0.17 0.05 NK_HLA L2
ENSG00000123064 DDX54 -319370 sc-eQTL 5.25e-01 -0.132 0.207 0.05 NK_HLA L2
ENSG00000135148 TRAFD1 740571 sc-eQTL 9.42e-01 0.014 0.192 0.05 NK_HLA L2
ENSG00000139405 RITA1 -319417 sc-eQTL 4.48e-01 0.152 0.2 0.05 NK_HLA L2
ENSG00000151176 PLBD2 -492457 sc-eQTL 6.95e-01 -0.0776 0.198 0.05 NK_HLA L2
ENSG00000173064 HECTD4 483670 sc-eQTL 8.69e-01 -0.0296 0.179 0.05 NK_HLA L2
ENSG00000179295 PTPN11 447758 sc-eQTL 3.52e-01 -0.175 0.187 0.05 NK_HLA L2
ENSG00000198270 TMEM116 852924 sc-eQTL 2.70e-02 0.41 0.184 0.05 NK_HLA L2
ENSG00000089009 RPL6 447271 sc-eQTL 6.44e-01 -0.0482 0.104 0.058 gdT L2
ENSG00000089060 SLC8B1 -493384 sc-eQTL 6.11e-01 -0.102 0.199 0.058 gdT L2
ENSG00000089127 OAS1 -40674 sc-eQTL 2.79e-01 0.204 0.187 0.058 gdT L2
ENSG00000089248 ERP29 852761 sc-eQTL 1.67e-01 -0.266 0.192 0.058 gdT L2
ENSG00000111300 NAA25 757313 sc-eQTL 7.60e-01 0.0692 0.227 0.058 gdT L2
ENSG00000111331 OAS3 -72335 sc-eQTL 5.12e-01 0.139 0.211 0.058 gdT L2
ENSG00000111335 OAS2 -112286 sc-eQTL 6.92e-01 -0.0683 0.172 0.058 gdT L2
ENSG00000123064 DDX54 -319370 sc-eQTL 8.25e-01 0.0494 0.223 0.058 gdT L2
ENSG00000135144 DTX1 -190600 sc-eQTL 5.73e-01 0.0996 0.176 0.058 gdT L2
ENSG00000135148 TRAFD1 740571 sc-eQTL 2.22e-01 0.255 0.208 0.058 gdT L2
ENSG00000139405 RITA1 -319417 sc-eQTL 6.54e-01 0.101 0.226 0.058 gdT L2
ENSG00000151176 PLBD2 -492457 sc-eQTL 4.13e-01 0.164 0.2 0.058 gdT L2
ENSG00000173064 HECTD4 483670 sc-eQTL 3.40e-01 0.192 0.2 0.058 gdT L2
ENSG00000179295 PTPN11 447758 sc-eQTL 5.28e-01 -0.131 0.207 0.058 gdT L2
ENSG00000186815 TPCN1 -354941 sc-eQTL 7.17e-01 0.0743 0.204 0.058 gdT L2
ENSG00000198270 TMEM116 852924 sc-eQTL 1.76e-01 0.272 0.2 0.058 gdT L2
ENSG00000089009 RPL6 447271 sc-eQTL 5.46e-01 0.0684 0.113 0.056 pDC L2
ENSG00000089060 SLC8B1 -493384 sc-eQTL 2.77e-01 0.241 0.221 0.056 pDC L2
ENSG00000089127 OAS1 -40674 sc-eQTL 4.80e-01 0.102 0.145 0.056 pDC L2
ENSG00000089169 RPH3A 295729 sc-eQTL 6.66e-01 0.0715 0.165 0.056 pDC L2
ENSG00000089248 ERP29 852761 sc-eQTL 9.97e-01 -0.000471 0.136 0.056 pDC L2
ENSG00000111300 NAA25 757313 sc-eQTL 5.89e-01 0.109 0.201 0.056 pDC L2
ENSG00000111331 OAS3 -72335 sc-eQTL 7.57e-01 0.0539 0.174 0.056 pDC L2
ENSG00000111335 OAS2 -112286 sc-eQTL 6.46e-01 0.0857 0.186 0.056 pDC L2
ENSG00000123064 DDX54 -319370 sc-eQTL 8.07e-01 -0.0529 0.216 0.056 pDC L2
ENSG00000135094 SDS -560192 sc-eQTL 9.96e-01 -0.000718 0.156 0.056 pDC L2
ENSG00000135148 TRAFD1 740571 sc-eQTL 7.96e-01 -0.0555 0.214 0.056 pDC L2
ENSG00000139405 RITA1 -319417 sc-eQTL 5.96e-01 -0.115 0.217 0.056 pDC L2
ENSG00000139410 SDSL -556271 sc-eQTL 9.92e-01 -0.00217 0.213 0.056 pDC L2
ENSG00000151176 PLBD2 -492457 sc-eQTL 8.48e-01 -0.0428 0.223 0.056 pDC L2
ENSG00000166578 IQCD -354985 sc-eQTL 2.23e-01 0.208 0.17 0.056 pDC L2
ENSG00000173064 HECTD4 483670 sc-eQTL 8.06e-01 -0.0448 0.182 0.056 pDC L2
ENSG00000179295 PTPN11 447758 sc-eQTL 4.18e-01 0.169 0.208 0.056 pDC L2
ENSG00000186815 TPCN1 -354941 sc-eQTL 3.76e-02 -0.418 0.199 0.056 pDC L2
ENSG00000198270 TMEM116 852924 sc-eQTL 6.89e-01 -0.0833 0.207 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -493384 eQTL 0.029 -0.151 0.0691 0.0 0.0 0.0309
ENSG00000089169 RPH3A 295729 eQTL 0.00202 0.268 0.0867 0.0 0.0 0.0309
ENSG00000111300 NAA25 757313 eQTL 0.0171 0.0836 0.035 0.0 0.0 0.0309
ENSG00000173064 HECTD4 483670 eQTL 0.00267 -0.125 0.0415 0.0 0.0 0.0309

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089169 RPH3A 295729 1.9e-06 2.44e-06 2.51e-07 1.98e-06 4.65e-07 6.4e-07 1.48e-06 4.39e-07 1.72e-06 6.07e-07 2.07e-06 8.37e-07 2.84e-06 6.9e-07 5.32e-07 1.01e-06 1.02e-06 1.55e-06 7.13e-07 1.15e-06 7.78e-07 1.96e-06 1.09e-06 6.41e-07 2.41e-06 7.38e-07 1.06e-06 1.32e-06 1.59e-06 1.67e-06 7.6e-07 3.07e-07 3.48e-07 5.82e-07 6.04e-07 5.42e-07 7.26e-07 2.38e-07 3.34e-07 2.29e-07 1.23e-07 2.2e-06 4.85e-07 1.74e-07 2.83e-07 3.04e-07 2.33e-07 8.81e-08 2.32e-07
ENSG00000111300 NAA25 757313 3.14e-07 2.17e-07 6.41e-08 2.87e-07 1.05e-07 8.45e-08 1.6e-07 5.53e-08 1.59e-07 6.08e-08 1.62e-07 8.68e-08 2.29e-07 8.07e-08 6.25e-08 7.97e-08 4.12e-08 1.91e-07 8e-08 6.16e-08 1.18e-07 1.39e-07 1.5e-07 3.58e-08 1.72e-07 1.14e-07 1.12e-07 1.28e-07 1.2e-07 1.24e-07 1.14e-07 2.9e-08 4.02e-08 9.52e-08 3.81e-08 2.85e-08 4.62e-08 9.23e-08 6.54e-08 3.8e-08 3.91e-08 1.6e-07 3.4e-08 1.81e-08 3.81e-08 1.19e-08 1.21e-07 3.89e-09 4.47e-08
ENSG00000173064 HECTD4 483670 1.17e-06 9.36e-07 1.59e-07 6.49e-07 9.77e-08 2.63e-07 5.01e-07 1.31e-07 6.27e-07 2.16e-07 8.08e-07 2.98e-07 1.03e-06 1.59e-07 1.5e-07 2.36e-07 2.77e-07 4.65e-07 3.77e-07 3.42e-07 2.43e-07 4.66e-07 3.3e-07 2.19e-07 8.62e-07 2.32e-07 2.71e-07 3.88e-07 2.84e-07 8.36e-07 3.66e-07 7.79e-08 4.28e-08 1.54e-07 3.3e-07 1.61e-07 1.97e-07 6.2e-08 4.72e-08 7.77e-08 5.41e-08 7.2e-07 6.87e-08 2.71e-08 1.17e-07 2.07e-08 9.19e-08 0.0 5.18e-08