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Genes within 1Mb (chr12:112854646:CT:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 435808 sc-eQTL 4.29e-01 -0.0848 0.107 0.052 CD4_CTL L2
ENSG00000089060 SLC8B1 -504847 sc-eQTL 1.03e-01 0.314 0.192 0.052 CD4_CTL L2
ENSG00000089127 OAS1 -52137 sc-eQTL 5.95e-01 -0.0917 0.172 0.052 CD4_CTL L2
ENSG00000089248 ERP29 841298 sc-eQTL 1.64e-01 -0.21 0.15 0.052 CD4_CTL L2
ENSG00000111300 NAA25 745850 sc-eQTL 7.41e-01 -0.0667 0.202 0.052 CD4_CTL L2
ENSG00000111331 OAS3 -83798 sc-eQTL 7.25e-01 -0.0682 0.194 0.052 CD4_CTL L2
ENSG00000111335 OAS2 -123749 sc-eQTL 7.15e-01 0.0693 0.19 0.052 CD4_CTL L2
ENSG00000123064 DDX54 -330833 sc-eQTL 9.16e-01 -0.0206 0.195 0.052 CD4_CTL L2
ENSG00000135144 DTX1 -202063 sc-eQTL 3.59e-01 0.128 0.139 0.052 CD4_CTL L2
ENSG00000135148 TRAFD1 729108 sc-eQTL 4.22e-02 0.41 0.201 0.052 CD4_CTL L2
ENSG00000139405 RITA1 -330880 sc-eQTL 8.11e-01 0.0465 0.194 0.052 CD4_CTL L2
ENSG00000151176 PLBD2 -503920 sc-eQTL 7.50e-01 0.0637 0.199 0.052 CD4_CTL L2
ENSG00000173064 HECTD4 472207 sc-eQTL 6.30e-01 0.0829 0.172 0.052 CD4_CTL L2
ENSG00000179295 PTPN11 436295 sc-eQTL 2.11e-01 -0.241 0.192 0.052 CD4_CTL L2
ENSG00000186815 TPCN1 -366404 sc-eQTL 5.81e-01 -0.101 0.182 0.052 CD4_CTL L2
ENSG00000198270 TMEM116 841461 sc-eQTL 5.45e-01 0.122 0.201 0.052 CD4_CTL L2
ENSG00000089009 RPL6 435808 sc-eQTL 3.13e-01 0.119 0.118 0.051 CD8_TCM L2
ENSG00000089060 SLC8B1 -504847 sc-eQTL 2.84e-01 -0.208 0.193 0.051 CD8_TCM L2
ENSG00000089127 OAS1 -52137 sc-eQTL 9.12e-01 -0.0187 0.169 0.051 CD8_TCM L2
ENSG00000089248 ERP29 841298 sc-eQTL 6.29e-01 -0.0888 0.183 0.051 CD8_TCM L2
ENSG00000111300 NAA25 745850 sc-eQTL 3.49e-01 0.182 0.193 0.051 CD8_TCM L2
ENSG00000111331 OAS3 -83798 sc-eQTL 3.05e-01 0.206 0.2 0.051 CD8_TCM L2
ENSG00000111335 OAS2 -123749 sc-eQTL 4.15e-01 0.133 0.164 0.051 CD8_TCM L2
ENSG00000123064 DDX54 -330833 sc-eQTL 9.18e-01 0.022 0.214 0.051 CD8_TCM L2
ENSG00000135148 TRAFD1 729108 sc-eQTL 8.32e-01 0.0429 0.201 0.051 CD8_TCM L2
ENSG00000139405 RITA1 -330880 sc-eQTL 7.11e-01 -0.0748 0.201 0.051 CD8_TCM L2
ENSG00000151176 PLBD2 -503920 sc-eQTL 2.58e-01 0.233 0.205 0.051 CD8_TCM L2
ENSG00000173064 HECTD4 472207 sc-eQTL 1.91e-01 -0.218 0.166 0.051 CD8_TCM L2
ENSG00000179295 PTPN11 436295 sc-eQTL 3.54e-01 -0.176 0.19 0.051 CD8_TCM L2
ENSG00000186815 TPCN1 -366404 sc-eQTL 5.42e-01 -0.123 0.202 0.051 CD8_TCM L2
ENSG00000198270 TMEM116 841461 sc-eQTL 8.21e-01 -0.0472 0.209 0.051 CD8_TCM L2
ENSG00000089009 RPL6 435808 sc-eQTL 3.12e-01 0.128 0.126 0.05 CD8_TEM L2
ENSG00000089060 SLC8B1 -504847 sc-eQTL 8.35e-01 -0.0415 0.199 0.05 CD8_TEM L2
ENSG00000089127 OAS1 -52137 sc-eQTL 9.36e-01 0.0127 0.158 0.05 CD8_TEM L2
ENSG00000089248 ERP29 841298 sc-eQTL 6.97e-01 0.0641 0.164 0.05 CD8_TEM L2
ENSG00000111300 NAA25 745850 sc-eQTL 4.98e-01 0.131 0.193 0.05 CD8_TEM L2
ENSG00000111331 OAS3 -83798 sc-eQTL 5.16e-02 -0.334 0.171 0.05 CD8_TEM L2
ENSG00000111335 OAS2 -123749 sc-eQTL 9.01e-01 0.0186 0.15 0.05 CD8_TEM L2
ENSG00000123064 DDX54 -330833 sc-eQTL 9.59e-03 0.531 0.203 0.05 CD8_TEM L2
ENSG00000135148 TRAFD1 729108 sc-eQTL 4.60e-01 0.142 0.192 0.05 CD8_TEM L2
ENSG00000139405 RITA1 -330880 sc-eQTL 1.25e-01 -0.289 0.187 0.05 CD8_TEM L2
ENSG00000151176 PLBD2 -503920 sc-eQTL 7.63e-01 0.0621 0.206 0.05 CD8_TEM L2
ENSG00000173064 HECTD4 472207 sc-eQTL 6.33e-01 -0.0867 0.181 0.05 CD8_TEM L2
ENSG00000179295 PTPN11 436295 sc-eQTL 7.79e-01 0.0557 0.198 0.05 CD8_TEM L2
ENSG00000186815 TPCN1 -366404 sc-eQTL 8.30e-02 -0.341 0.196 0.05 CD8_TEM L2
ENSG00000198270 TMEM116 841461 sc-eQTL 3.41e-01 0.191 0.2 0.05 CD8_TEM L2
ENSG00000089009 RPL6 435808 sc-eQTL 3.64e-01 0.102 0.112 0.051 NK_CD56bright L2
ENSG00000089060 SLC8B1 -504847 sc-eQTL 1.04e-01 -0.317 0.194 0.051 NK_CD56bright L2
ENSG00000089127 OAS1 -52137 sc-eQTL 6.67e-01 0.0669 0.155 0.051 NK_CD56bright L2
ENSG00000089248 ERP29 841298 sc-eQTL 4.76e-01 -0.127 0.178 0.051 NK_CD56bright L2
ENSG00000111300 NAA25 745850 sc-eQTL 2.85e-02 -0.398 0.181 0.051 NK_CD56bright L2
ENSG00000111331 OAS3 -83798 sc-eQTL 7.35e-01 0.0559 0.165 0.051 NK_CD56bright L2
ENSG00000111335 OAS2 -123749 sc-eQTL 4.02e-01 -0.122 0.146 0.051 NK_CD56bright L2
ENSG00000123064 DDX54 -330833 sc-eQTL 2.63e-01 0.223 0.199 0.051 NK_CD56bright L2
ENSG00000135148 TRAFD1 729108 sc-eQTL 2.10e-01 0.228 0.181 0.051 NK_CD56bright L2
ENSG00000139405 RITA1 -330880 sc-eQTL 9.65e-01 -0.00874 0.201 0.051 NK_CD56bright L2
ENSG00000151176 PLBD2 -503920 sc-eQTL 9.20e-01 0.0201 0.2 0.051 NK_CD56bright L2
ENSG00000173064 HECTD4 472207 sc-eQTL 5.34e-01 0.101 0.162 0.051 NK_CD56bright L2
ENSG00000179295 PTPN11 436295 sc-eQTL 7.19e-01 0.0641 0.178 0.051 NK_CD56bright L2
ENSG00000198270 TMEM116 841461 sc-eQTL 2.25e-01 0.24 0.197 0.051 NK_CD56bright L2
ENSG00000089009 RPL6 435808 sc-eQTL 9.61e-01 0.0048 0.098 0.053 NK_HLA L2
ENSG00000089060 SLC8B1 -504847 sc-eQTL 6.90e-01 0.0749 0.187 0.053 NK_HLA L2
ENSG00000089127 OAS1 -52137 sc-eQTL 1.48e-01 0.239 0.165 0.053 NK_HLA L2
ENSG00000089248 ERP29 841298 sc-eQTL 8.70e-01 0.028 0.171 0.053 NK_HLA L2
ENSG00000111300 NAA25 745850 sc-eQTL 5.38e-01 -0.121 0.196 0.053 NK_HLA L2
ENSG00000111331 OAS3 -83798 sc-eQTL 6.72e-01 -0.073 0.172 0.053 NK_HLA L2
ENSG00000111335 OAS2 -123749 sc-eQTL 8.20e-01 0.0382 0.168 0.053 NK_HLA L2
ENSG00000123064 DDX54 -330833 sc-eQTL 6.46e-01 -0.094 0.204 0.053 NK_HLA L2
ENSG00000135148 TRAFD1 729108 sc-eQTL 9.35e-01 0.0154 0.19 0.053 NK_HLA L2
ENSG00000139405 RITA1 -330880 sc-eQTL 4.92e-01 0.136 0.197 0.053 NK_HLA L2
ENSG00000151176 PLBD2 -503920 sc-eQTL 8.25e-01 -0.0433 0.195 0.053 NK_HLA L2
ENSG00000173064 HECTD4 472207 sc-eQTL 8.93e-01 -0.0238 0.177 0.053 NK_HLA L2
ENSG00000179295 PTPN11 436295 sc-eQTL 4.51e-01 -0.14 0.185 0.053 NK_HLA L2
ENSG00000198270 TMEM116 841461 sc-eQTL 5.38e-02 0.354 0.182 0.053 NK_HLA L2
ENSG00000089009 RPL6 435808 sc-eQTL 9.99e-01 -0.000133 0.0895 0.05 Pro_T L2
ENSG00000089060 SLC8B1 -504847 sc-eQTL 6.32e-01 0.0966 0.202 0.05 Pro_T L2
ENSG00000089127 OAS1 -52137 sc-eQTL 9.57e-01 -0.00665 0.122 0.05 Pro_T L2
ENSG00000089248 ERP29 841298 sc-eQTL 9.97e-01 -0.000528 0.123 0.05 Pro_T L2
ENSG00000111300 NAA25 745850 sc-eQTL 4.13e-02 -0.403 0.196 0.05 Pro_T L2
ENSG00000111331 OAS3 -83798 sc-eQTL 4.35e-01 -0.135 0.172 0.05 Pro_T L2
ENSG00000111335 OAS2 -123749 sc-eQTL 8.57e-01 -0.0264 0.147 0.05 Pro_T L2
ENSG00000123064 DDX54 -330833 sc-eQTL 6.29e-01 -0.0839 0.173 0.05 Pro_T L2
ENSG00000135144 DTX1 -202063 sc-eQTL 5.18e-01 0.0993 0.154 0.05 Pro_T L2
ENSG00000135148 TRAFD1 729108 sc-eQTL 7.96e-01 -0.0527 0.203 0.05 Pro_T L2
ENSG00000139405 RITA1 -330880 sc-eQTL 2.38e-01 -0.215 0.181 0.05 Pro_T L2
ENSG00000151176 PLBD2 -503920 sc-eQTL 1.79e-01 0.267 0.198 0.05 Pro_T L2
ENSG00000173064 HECTD4 472207 sc-eQTL 3.43e-01 -0.171 0.18 0.05 Pro_T L2
ENSG00000179295 PTPN11 436295 sc-eQTL 2.05e-01 -0.209 0.164 0.05 Pro_T L2
ENSG00000186815 TPCN1 -366404 sc-eQTL 7.93e-01 0.0474 0.181 0.05 Pro_T L2
ENSG00000198270 TMEM116 841461 sc-eQTL 7.31e-01 -0.0707 0.205 0.05 Pro_T L2
ENSG00000089009 RPL6 435808 sc-eQTL 4.67e-01 -0.0746 0.102 0.061 gdT L2
ENSG00000089060 SLC8B1 -504847 sc-eQTL 7.32e-01 -0.0674 0.196 0.061 gdT L2
ENSG00000089127 OAS1 -52137 sc-eQTL 2.74e-01 0.203 0.185 0.061 gdT L2
ENSG00000089248 ERP29 841298 sc-eQTL 2.29e-01 -0.229 0.19 0.061 gdT L2
ENSG00000111300 NAA25 745850 sc-eQTL 7.69e-01 0.0659 0.224 0.061 gdT L2
ENSG00000111331 OAS3 -83798 sc-eQTL 4.68e-01 0.152 0.208 0.061 gdT L2
ENSG00000111335 OAS2 -123749 sc-eQTL 7.29e-01 -0.0589 0.17 0.061 gdT L2
ENSG00000123064 DDX54 -330833 sc-eQTL 7.82e-01 0.061 0.22 0.061 gdT L2
ENSG00000135144 DTX1 -202063 sc-eQTL 8.05e-01 0.043 0.174 0.061 gdT L2
ENSG00000135148 TRAFD1 729108 sc-eQTL 1.54e-01 0.293 0.205 0.061 gdT L2
ENSG00000139405 RITA1 -330880 sc-eQTL 5.44e-01 0.136 0.223 0.061 gdT L2
ENSG00000151176 PLBD2 -503920 sc-eQTL 3.68e-01 0.178 0.197 0.061 gdT L2
ENSG00000173064 HECTD4 472207 sc-eQTL 2.52e-01 0.227 0.197 0.061 gdT L2
ENSG00000179295 PTPN11 436295 sc-eQTL 4.47e-01 -0.156 0.204 0.061 gdT L2
ENSG00000186815 TPCN1 -366404 sc-eQTL 4.87e-01 0.14 0.201 0.061 gdT L2
ENSG00000198270 TMEM116 841461 sc-eQTL 3.69e-01 0.178 0.198 0.061 gdT L2
ENSG00000089009 RPL6 435808 sc-eQTL 6.87e-01 -0.0367 0.0911 0.052 ncMono L2
ENSG00000089060 SLC8B1 -504847 sc-eQTL 9.33e-01 0.0143 0.171 0.052 ncMono L2
ENSG00000089127 OAS1 -52137 sc-eQTL 1.91e-01 -0.126 0.0958 0.052 ncMono L2
ENSG00000089169 RPH3A 284266 sc-eQTL 3.49e-01 -0.153 0.164 0.052 ncMono L2
ENSG00000089248 ERP29 841298 sc-eQTL 9.19e-01 0.0167 0.164 0.052 ncMono L2
ENSG00000111300 NAA25 745850 sc-eQTL 2.59e-01 0.229 0.202 0.052 ncMono L2
ENSG00000111331 OAS3 -83798 sc-eQTL 2.25e-01 -0.175 0.144 0.052 ncMono L2
ENSG00000111335 OAS2 -123749 sc-eQTL 1.24e-01 -0.215 0.139 0.052 ncMono L2
ENSG00000123064 DDX54 -330833 sc-eQTL 3.60e-01 -0.165 0.18 0.052 ncMono L2
ENSG00000135148 TRAFD1 729108 sc-eQTL 1.60e-01 -0.204 0.144 0.052 ncMono L2
ENSG00000139405 RITA1 -330880 sc-eQTL 3.66e-01 -0.185 0.204 0.052 ncMono L2
ENSG00000139410 SDSL -567734 sc-eQTL 3.70e-01 -0.151 0.168 0.052 ncMono L2
ENSG00000151176 PLBD2 -503920 sc-eQTL 3.90e-01 -0.152 0.176 0.052 ncMono L2
ENSG00000173064 HECTD4 472207 sc-eQTL 8.62e-01 0.0272 0.156 0.052 ncMono L2
ENSG00000179295 PTPN11 436295 sc-eQTL 8.25e-01 -0.0442 0.199 0.052 ncMono L2
ENSG00000186815 TPCN1 -366404 sc-eQTL 6.98e-01 -0.0609 0.157 0.052 ncMono L2
ENSG00000198270 TMEM116 841461 sc-eQTL 3.86e-01 -0.168 0.193 0.052 ncMono L2
ENSG00000089009 RPL6 435808 sc-eQTL 6.95e-01 0.0435 0.111 0.059 pDC L2
ENSG00000089060 SLC8B1 -504847 sc-eQTL 1.65e-01 0.301 0.216 0.059 pDC L2
ENSG00000089127 OAS1 -52137 sc-eQTL 2.71e-01 0.156 0.141 0.059 pDC L2
ENSG00000089169 RPH3A 284266 sc-eQTL 7.35e-01 0.0549 0.162 0.059 pDC L2
ENSG00000089248 ERP29 841298 sc-eQTL 8.22e-01 -0.03 0.133 0.059 pDC L2
ENSG00000111300 NAA25 745850 sc-eQTL 5.53e-01 0.117 0.197 0.059 pDC L2
ENSG00000111331 OAS3 -83798 sc-eQTL 5.84e-01 0.0934 0.17 0.059 pDC L2
ENSG00000111335 OAS2 -123749 sc-eQTL 5.82e-01 0.1 0.182 0.059 pDC L2
ENSG00000123064 DDX54 -330833 sc-eQTL 4.16e-01 -0.172 0.211 0.059 pDC L2
ENSG00000135094 SDS -571655 sc-eQTL 9.68e-01 -0.00616 0.153 0.059 pDC L2
ENSG00000135148 TRAFD1 729108 sc-eQTL 6.88e-01 -0.0842 0.21 0.059 pDC L2
ENSG00000139405 RITA1 -330880 sc-eQTL 4.99e-01 -0.144 0.213 0.059 pDC L2
ENSG00000139410 SDSL -567734 sc-eQTL 7.41e-01 -0.0691 0.209 0.059 pDC L2
ENSG00000151176 PLBD2 -503920 sc-eQTL 7.77e-01 -0.062 0.218 0.059 pDC L2
ENSG00000166578 IQCD -366448 sc-eQTL 2.76e-01 0.182 0.167 0.059 pDC L2
ENSG00000173064 HECTD4 472207 sc-eQTL 6.35e-01 -0.0845 0.178 0.059 pDC L2
ENSG00000179295 PTPN11 436295 sc-eQTL 3.95e-01 0.174 0.204 0.059 pDC L2
ENSG00000186815 TPCN1 -366404 sc-eQTL 3.05e-02 -0.426 0.195 0.059 pDC L2
ENSG00000198270 TMEM116 841461 sc-eQTL 9.86e-01 -0.00352 0.203 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -504847 eQTL 0.0193 -0.16 0.0682 0.0 0.0 0.0319
ENSG00000089169 RPH3A 284266 eQTL 0.00114 0.279 0.0855 0.0 0.0 0.0319
ENSG00000111300 NAA25 745850 eQTL 0.0269 0.0766 0.0345 0.0 0.0 0.0319
ENSG00000173064 HECTD4 472207 eQTL 0.00178 -0.128 0.0409 0.0 0.0 0.0319

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089169 RPH3A 284266 1.24e-06 2.56e-07 1.27e-07 4.31e-07 1.07e-07 4.63e-07 8.7e-07 5.43e-08 1.89e-07 1.65e-07 9.47e-07 1.72e-07 1.03e-06 9.48e-08 6e-08 1.49e-07 8.64e-08 3.95e-07 1.7e-07 7.4e-08 2.38e-07 3.65e-07 3.81e-07 4.27e-08 3.14e-07 2.29e-07 2.43e-07 1.67e-07 6.84e-07 5.36e-07 1.93e-07 3.93e-08 3.43e-08 1.15e-07 3.03e-07 5.51e-08 1.1e-07 8.93e-08 4.83e-08 6.67e-08 3.92e-08 1.13e-06 1.39e-07 1.55e-08 1.61e-07 1.8e-08 7.83e-08 3.89e-09 4.8e-08
ENSG00000111300 NAA25 745850 2.67e-07 1.06e-07 3.69e-08 1.82e-07 9.91e-08 9.65e-08 1.49e-07 5.24e-08 1.37e-07 4.24e-08 1.6e-07 8.02e-08 1.3e-07 6.21e-08 4.77e-08 7.89e-08 5.12e-08 1.14e-07 5.21e-08 3.59e-08 1.04e-07 1.28e-07 1.26e-07 4.98e-08 1.32e-07 1.15e-07 1.1e-07 8.45e-08 1.05e-07 1.1e-07 9.58e-08 3.41e-08 2.74e-08 8.25e-08 9.15e-08 3.93e-08 4.79e-08 8.78e-08 8.3e-08 3.69e-08 3.71e-08 1.4e-07 4.19e-08 1.88e-08 9.21e-08 1.8e-08 1.37e-07 4.82e-09 4.61e-08
ENSG00000173064 HECTD4 472207 6.09e-07 1.27e-07 5.64e-08 2.24e-07 9.21e-08 1.26e-07 3.42e-07 5.49e-08 1.44e-07 5.42e-08 2.04e-07 8.68e-08 2.38e-07 7.37e-08 5.14e-08 7.5e-08 3.94e-08 1.64e-07 7.09e-08 4.1e-08 1.33e-07 1.26e-07 1.64e-07 3.68e-08 1.4e-07 1.26e-07 1.18e-07 9.65e-08 1.44e-07 1.06e-07 1.02e-07 3.84e-08 2.92e-08 8.23e-08 3.4e-08 3.2e-08 4.06e-08 9.56e-08 6.54e-08 3.18e-08 2.99e-08 2.71e-07 1.96e-08 1.43e-08 3.81e-08 1.69e-08 1.22e-07 4.5e-09 5.04e-08