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Genes within 1Mb (chr12:112835420:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 416582 sc-eQTL 5.33e-01 -0.0664 0.106 0.052 CD4_CTL L2
ENSG00000089022 MAPKAPK5 993192 sc-eQTL 6.28e-01 0.0999 0.206 0.052 CD4_CTL L2
ENSG00000089060 SLC8B1 -524073 sc-eQTL 1.30e-01 0.29 0.191 0.052 CD4_CTL L2
ENSG00000089127 OAS1 -71363 sc-eQTL 8.67e-01 -0.0289 0.172 0.052 CD4_CTL L2
ENSG00000089248 ERP29 822072 sc-eQTL 1.01e-01 -0.246 0.149 0.052 CD4_CTL L2
ENSG00000111300 NAA25 726624 sc-eQTL 7.12e-01 -0.0741 0.201 0.052 CD4_CTL L2
ENSG00000111331 OAS3 -103024 sc-eQTL 4.65e-01 -0.141 0.193 0.052 CD4_CTL L2
ENSG00000111335 OAS2 -142975 sc-eQTL 5.04e-01 0.126 0.188 0.052 CD4_CTL L2
ENSG00000123064 DDX54 -350059 sc-eQTL 7.55e-01 0.0606 0.194 0.052 CD4_CTL L2
ENSG00000135144 DTX1 -221289 sc-eQTL 1.60e-01 0.195 0.138 0.052 CD4_CTL L2
ENSG00000135148 TRAFD1 709882 sc-eQTL 6.24e-02 0.374 0.2 0.052 CD4_CTL L2
ENSG00000139405 RITA1 -350106 sc-eQTL 6.29e-01 0.0933 0.193 0.052 CD4_CTL L2
ENSG00000151176 PLBD2 -523146 sc-eQTL 8.15e-01 0.0465 0.198 0.052 CD4_CTL L2
ENSG00000173064 HECTD4 452981 sc-eQTL 4.82e-01 0.12 0.171 0.052 CD4_CTL L2
ENSG00000179295 PTPN11 417069 sc-eQTL 4.28e-01 -0.152 0.192 0.052 CD4_CTL L2
ENSG00000186815 TPCN1 -385630 sc-eQTL 6.01e-01 -0.0949 0.181 0.052 CD4_CTL L2
ENSG00000198270 TMEM116 822235 sc-eQTL 3.72e-01 0.179 0.2 0.052 CD4_CTL L2
ENSG00000234608 MAPKAPK5-AS1 992518 sc-eQTL 5.68e-01 0.11 0.192 0.052 CD4_CTL L2
ENSG00000089009 RPL6 416582 sc-eQTL 6.93e-01 0.0462 0.117 0.051 CD8_TCM L2
ENSG00000089022 MAPKAPK5 993192 sc-eQTL 1.48e-01 -0.281 0.194 0.051 CD8_TCM L2
ENSG00000089060 SLC8B1 -524073 sc-eQTL 8.46e-01 -0.0373 0.192 0.051 CD8_TCM L2
ENSG00000089127 OAS1 -71363 sc-eQTL 9.28e-01 0.0151 0.167 0.051 CD8_TCM L2
ENSG00000089248 ERP29 822072 sc-eQTL 5.82e-01 -0.1 0.182 0.051 CD8_TCM L2
ENSG00000111300 NAA25 726624 sc-eQTL 1.85e-01 0.254 0.191 0.051 CD8_TCM L2
ENSG00000111331 OAS3 -103024 sc-eQTL 4.48e-01 0.151 0.198 0.051 CD8_TCM L2
ENSG00000111335 OAS2 -142975 sc-eQTL 7.38e-01 0.0543 0.162 0.051 CD8_TCM L2
ENSG00000123064 DDX54 -350059 sc-eQTL 9.72e-01 -0.00752 0.211 0.051 CD8_TCM L2
ENSG00000135148 TRAFD1 709882 sc-eQTL 7.35e-01 -0.0675 0.199 0.051 CD8_TCM L2
ENSG00000139405 RITA1 -350106 sc-eQTL 6.18e-01 0.0994 0.199 0.051 CD8_TCM L2
ENSG00000151176 PLBD2 -523146 sc-eQTL 3.40e-01 0.194 0.203 0.051 CD8_TCM L2
ENSG00000173064 HECTD4 452981 sc-eQTL 2.81e-01 -0.178 0.165 0.051 CD8_TCM L2
ENSG00000179295 PTPN11 417069 sc-eQTL 2.26e-01 -0.227 0.187 0.051 CD8_TCM L2
ENSG00000186815 TPCN1 -385630 sc-eQTL 7.78e-01 0.0564 0.2 0.051 CD8_TCM L2
ENSG00000198270 TMEM116 822235 sc-eQTL 8.17e-01 -0.0478 0.207 0.051 CD8_TCM L2
ENSG00000234608 MAPKAPK5-AS1 992518 sc-eQTL 8.32e-01 -0.0397 0.187 0.051 CD8_TCM L2
ENSG00000089009 RPL6 416582 sc-eQTL 1.67e-01 0.174 0.126 0.05 CD8_TEM L2
ENSG00000089022 MAPKAPK5 993192 sc-eQTL 5.83e-01 0.115 0.21 0.05 CD8_TEM L2
ENSG00000089060 SLC8B1 -524073 sc-eQTL 6.99e-01 0.0767 0.198 0.05 CD8_TEM L2
ENSG00000089127 OAS1 -71363 sc-eQTL 5.73e-01 -0.0886 0.157 0.05 CD8_TEM L2
ENSG00000089248 ERP29 822072 sc-eQTL 9.75e-01 0.00518 0.163 0.05 CD8_TEM L2
ENSG00000111300 NAA25 726624 sc-eQTL 7.05e-01 0.0727 0.192 0.05 CD8_TEM L2
ENSG00000111331 OAS3 -103024 sc-eQTL 1.15e-01 -0.27 0.17 0.05 CD8_TEM L2
ENSG00000111335 OAS2 -142975 sc-eQTL 7.87e-01 0.0404 0.149 0.05 CD8_TEM L2
ENSG00000123064 DDX54 -350059 sc-eQTL 3.28e-02 0.437 0.203 0.05 CD8_TEM L2
ENSG00000135148 TRAFD1 709882 sc-eQTL 4.18e-01 0.155 0.191 0.05 CD8_TEM L2
ENSG00000139405 RITA1 -350106 sc-eQTL 6.57e-02 -0.344 0.186 0.05 CD8_TEM L2
ENSG00000151176 PLBD2 -523146 sc-eQTL 9.11e-01 0.023 0.205 0.05 CD8_TEM L2
ENSG00000173064 HECTD4 452981 sc-eQTL 4.80e-01 -0.128 0.18 0.05 CD8_TEM L2
ENSG00000179295 PTPN11 417069 sc-eQTL 8.87e-01 0.028 0.197 0.05 CD8_TEM L2
ENSG00000186815 TPCN1 -385630 sc-eQTL 6.31e-02 -0.363 0.194 0.05 CD8_TEM L2
ENSG00000198270 TMEM116 822235 sc-eQTL 8.79e-01 0.0306 0.2 0.05 CD8_TEM L2
ENSG00000234608 MAPKAPK5-AS1 992518 sc-eQTL 1.18e-02 0.483 0.19 0.05 CD8_TEM L2
ENSG00000089009 RPL6 416582 sc-eQTL 4.40e-01 0.0868 0.112 0.051 NK_CD56bright L2
ENSG00000089022 MAPKAPK5 993192 sc-eQTL 6.60e-01 0.0836 0.19 0.051 NK_CD56bright L2
ENSG00000089060 SLC8B1 -524073 sc-eQTL 4.80e-01 -0.138 0.195 0.051 NK_CD56bright L2
ENSG00000089127 OAS1 -71363 sc-eQTL 4.86e-01 0.108 0.155 0.051 NK_CD56bright L2
ENSG00000089248 ERP29 822072 sc-eQTL 8.30e-01 -0.0382 0.178 0.051 NK_CD56bright L2
ENSG00000111300 NAA25 726624 sc-eQTL 6.17e-02 -0.34 0.181 0.051 NK_CD56bright L2
ENSG00000111331 OAS3 -103024 sc-eQTL 5.88e-01 -0.0895 0.165 0.051 NK_CD56bright L2
ENSG00000111335 OAS2 -142975 sc-eQTL 2.47e-01 -0.169 0.145 0.051 NK_CD56bright L2
ENSG00000123064 DDX54 -350059 sc-eQTL 1.35e-01 0.298 0.198 0.051 NK_CD56bright L2
ENSG00000135148 TRAFD1 709882 sc-eQTL 3.14e-01 0.183 0.181 0.051 NK_CD56bright L2
ENSG00000139405 RITA1 -350106 sc-eQTL 9.43e-01 0.0142 0.2 0.051 NK_CD56bright L2
ENSG00000151176 PLBD2 -523146 sc-eQTL 4.65e-01 -0.146 0.2 0.051 NK_CD56bright L2
ENSG00000173064 HECTD4 452981 sc-eQTL 9.30e-01 -0.0143 0.162 0.051 NK_CD56bright L2
ENSG00000179295 PTPN11 417069 sc-eQTL 4.22e-01 0.143 0.178 0.051 NK_CD56bright L2
ENSG00000198270 TMEM116 822235 sc-eQTL 1.56e-01 0.28 0.196 0.051 NK_CD56bright L2
ENSG00000234608 MAPKAPK5-AS1 992518 sc-eQTL 7.21e-01 0.071 0.199 0.051 NK_CD56bright L2
ENSG00000089009 RPL6 416582 sc-eQTL 8.14e-01 0.0234 0.0994 0.05 NK_HLA L2
ENSG00000089022 MAPKAPK5 993192 sc-eQTL 6.71e-01 0.0848 0.199 0.05 NK_HLA L2
ENSG00000089060 SLC8B1 -524073 sc-eQTL 8.19e-01 0.0435 0.19 0.05 NK_HLA L2
ENSG00000089127 OAS1 -71363 sc-eQTL 9.60e-02 0.278 0.166 0.05 NK_HLA L2
ENSG00000089248 ERP29 822072 sc-eQTL 7.65e-01 0.052 0.174 0.05 NK_HLA L2
ENSG00000111300 NAA25 726624 sc-eQTL 3.84e-01 -0.173 0.199 0.05 NK_HLA L2
ENSG00000111331 OAS3 -103024 sc-eQTL 6.05e-01 -0.0905 0.175 0.05 NK_HLA L2
ENSG00000111335 OAS2 -142975 sc-eQTL 9.64e-01 0.00774 0.17 0.05 NK_HLA L2
ENSG00000123064 DDX54 -350059 sc-eQTL 6.91e-01 -0.0824 0.207 0.05 NK_HLA L2
ENSG00000135148 TRAFD1 709882 sc-eQTL 4.51e-01 0.145 0.192 0.05 NK_HLA L2
ENSG00000139405 RITA1 -350106 sc-eQTL 4.61e-01 0.148 0.2 0.05 NK_HLA L2
ENSG00000151176 PLBD2 -523146 sc-eQTL 9.34e-01 -0.0164 0.198 0.05 NK_HLA L2
ENSG00000173064 HECTD4 452981 sc-eQTL 8.78e-01 -0.0276 0.179 0.05 NK_HLA L2
ENSG00000179295 PTPN11 417069 sc-eQTL 1.89e-01 -0.246 0.187 0.05 NK_HLA L2
ENSG00000198270 TMEM116 822235 sc-eQTL 1.15e-01 0.293 0.185 0.05 NK_HLA L2
ENSG00000234608 MAPKAPK5-AS1 992518 sc-eQTL 7.89e-01 0.0541 0.202 0.05 NK_HLA L2
ENSG00000089009 RPL6 416582 sc-eQTL 4.16e-01 -0.0846 0.104 0.058 gdT L2
ENSG00000089022 MAPKAPK5 993192 sc-eQTL 1.67e-01 0.307 0.221 0.058 gdT L2
ENSG00000089060 SLC8B1 -524073 sc-eQTL 5.90e-01 -0.107 0.199 0.058 gdT L2
ENSG00000089127 OAS1 -71363 sc-eQTL 8.48e-01 0.0362 0.188 0.058 gdT L2
ENSG00000089248 ERP29 822072 sc-eQTL 1.68e-01 -0.266 0.192 0.058 gdT L2
ENSG00000111300 NAA25 726624 sc-eQTL 8.41e-01 0.0454 0.227 0.058 gdT L2
ENSG00000111331 OAS3 -103024 sc-eQTL 5.73e-01 0.119 0.211 0.058 gdT L2
ENSG00000111335 OAS2 -142975 sc-eQTL 6.89e-01 -0.0691 0.172 0.058 gdT L2
ENSG00000123064 DDX54 -350059 sc-eQTL 9.38e-01 0.0173 0.223 0.058 gdT L2
ENSG00000135144 DTX1 -221289 sc-eQTL 7.18e-01 -0.0636 0.176 0.058 gdT L2
ENSG00000135148 TRAFD1 709882 sc-eQTL 2.38e-01 0.246 0.208 0.058 gdT L2
ENSG00000139405 RITA1 -350106 sc-eQTL 4.53e-01 0.17 0.226 0.058 gdT L2
ENSG00000151176 PLBD2 -523146 sc-eQTL 1.72e-01 0.274 0.199 0.058 gdT L2
ENSG00000173064 HECTD4 452981 sc-eQTL 4.32e-01 0.158 0.2 0.058 gdT L2
ENSG00000179295 PTPN11 417069 sc-eQTL 6.88e-01 -0.0834 0.207 0.058 gdT L2
ENSG00000186815 TPCN1 -385630 sc-eQTL 6.82e-01 0.0839 0.204 0.058 gdT L2
ENSG00000198270 TMEM116 822235 sc-eQTL 3.23e-01 0.199 0.201 0.058 gdT L2
ENSG00000234608 MAPKAPK5-AS1 992518 sc-eQTL 9.17e-01 -0.0221 0.211 0.058 gdT L2
ENSG00000089009 RPL6 416582 sc-eQTL 6.65e-01 -0.0404 0.093 0.052 ncMono L2
ENSG00000089022 MAPKAPK5 993192 sc-eQTL 3.78e-01 -0.164 0.186 0.052 ncMono L2
ENSG00000089060 SLC8B1 -524073 sc-eQTL 8.82e-01 -0.0259 0.175 0.052 ncMono L2
ENSG00000089127 OAS1 -71363 sc-eQTL 4.49e-01 -0.0745 0.0982 0.052 ncMono L2
ENSG00000089169 RPH3A 265040 sc-eQTL 5.88e-01 -0.0908 0.167 0.052 ncMono L2
ENSG00000089248 ERP29 822072 sc-eQTL 8.92e-01 0.0229 0.168 0.052 ncMono L2
ENSG00000111300 NAA25 726624 sc-eQTL 4.70e-01 0.15 0.207 0.052 ncMono L2
ENSG00000111331 OAS3 -103024 sc-eQTL 7.10e-02 -0.265 0.146 0.052 ncMono L2
ENSG00000111335 OAS2 -142975 sc-eQTL 9.76e-02 -0.236 0.142 0.052 ncMono L2
ENSG00000123064 DDX54 -350059 sc-eQTL 4.44e-01 -0.141 0.184 0.052 ncMono L2
ENSG00000135148 TRAFD1 709882 sc-eQTL 2.88e-01 -0.158 0.148 0.052 ncMono L2
ENSG00000139405 RITA1 -350106 sc-eQTL 3.38e-01 -0.2 0.208 0.052 ncMono L2
ENSG00000139410 SDSL -586960 sc-eQTL 4.05e-01 -0.144 0.172 0.052 ncMono L2
ENSG00000151176 PLBD2 -523146 sc-eQTL 5.58e-01 -0.106 0.18 0.052 ncMono L2
ENSG00000173064 HECTD4 452981 sc-eQTL 9.16e-01 0.017 0.16 0.052 ncMono L2
ENSG00000179295 PTPN11 417069 sc-eQTL 5.95e-01 -0.108 0.204 0.052 ncMono L2
ENSG00000186815 TPCN1 -385630 sc-eQTL 9.15e-01 -0.0171 0.16 0.052 ncMono L2
ENSG00000198270 TMEM116 822235 sc-eQTL 3.88e-01 -0.17 0.197 0.052 ncMono L2
ENSG00000234608 MAPKAPK5-AS1 992518 sc-eQTL 7.81e-01 -0.0492 0.177 0.052 ncMono L2
ENSG00000089009 RPL6 416582 sc-eQTL 5.26e-01 0.0712 0.112 0.059 pDC L2
ENSG00000089022 MAPKAPK5 993192 sc-eQTL 3.09e-02 0.493 0.226 0.059 pDC L2
ENSG00000089060 SLC8B1 -524073 sc-eQTL 1.14e-01 0.346 0.218 0.059 pDC L2
ENSG00000089127 OAS1 -71363 sc-eQTL 9.75e-01 -0.00458 0.144 0.059 pDC L2
ENSG00000089169 RPH3A 265040 sc-eQTL 7.86e-01 0.0447 0.164 0.059 pDC L2
ENSG00000089248 ERP29 822072 sc-eQTL 8.27e-01 -0.0295 0.135 0.059 pDC L2
ENSG00000111300 NAA25 726624 sc-eQTL 8.88e-01 -0.0282 0.2 0.059 pDC L2
ENSG00000111331 OAS3 -103024 sc-eQTL 8.02e-01 0.0434 0.173 0.059 pDC L2
ENSG00000111335 OAS2 -142975 sc-eQTL 7.21e-01 -0.066 0.184 0.059 pDC L2
ENSG00000123064 DDX54 -350059 sc-eQTL 6.47e-01 -0.0981 0.214 0.059 pDC L2
ENSG00000135094 SDS -590881 sc-eQTL 6.11e-01 -0.0788 0.155 0.059 pDC L2
ENSG00000135148 TRAFD1 709882 sc-eQTL 9.32e-01 -0.0182 0.212 0.059 pDC L2
ENSG00000139405 RITA1 -350106 sc-eQTL 6.98e-01 -0.0837 0.215 0.059 pDC L2
ENSG00000139410 SDSL -586960 sc-eQTL 4.13e-01 -0.173 0.211 0.059 pDC L2
ENSG00000151176 PLBD2 -523146 sc-eQTL 3.08e-01 -0.226 0.221 0.059 pDC L2
ENSG00000166578 IQCD -385674 sc-eQTL 9.26e-01 -0.0157 0.169 0.059 pDC L2
ENSG00000173064 HECTD4 452981 sc-eQTL 7.87e-01 0.0489 0.18 0.059 pDC L2
ENSG00000179295 PTPN11 417069 sc-eQTL 4.32e-01 0.162 0.206 0.059 pDC L2
ENSG00000186815 TPCN1 -385630 sc-eQTL 1.30e-01 -0.303 0.199 0.059 pDC L2
ENSG00000198270 TMEM116 822235 sc-eQTL 6.14e-01 0.104 0.206 0.059 pDC L2
ENSG00000234608 MAPKAPK5-AS1 992518 sc-eQTL 8.64e-01 -0.0354 0.206 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -524073 eQTL 0.0162 -0.157 0.0653 0.0 0.0 0.0339
ENSG00000089169 RPH3A 265040 eQTL 0.000273 0.299 0.0817 0.0 0.0 0.0339
ENSG00000111300 NAA25 726624 eQTL 0.0462 0.066 0.0331 0.0 0.0 0.0339
ENSG00000173064 HECTD4 452981 eQTL 0.00652 -0.107 0.0392 0.0 0.0 0.0339

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089169 RPH3A 265040 1.92e-06 3.09e-06 2.53e-07 3.34e-06 3.4e-07 7.28e-07 1.32e-06 3.49e-07 2.06e-06 6.56e-07 2.05e-06 9.81e-07 8.51e-06 1.41e-06 8.54e-07 9.19e-07 1.07e-06 1.09e-06 6.74e-07 1.51e-06 7.54e-07 1.93e-06 1.68e-06 9.8e-07 2.82e-06 8.9e-07 8.36e-07 1.06e-06 1.66e-06 1.95e-06 2.03e-06 2.84e-07 3.45e-07 1.47e-06 1.98e-06 6.32e-07 1.71e-06 4.68e-07 8.52e-07 1.15e-06 7.36e-07 3.49e-06 4.14e-07 1.89e-07 1.67e-07 3.09e-07 2.34e-07 2.3e-07 1.07e-07
ENSG00000123064 \N -350059 1.32e-06 1.3e-06 3.2e-07 1.92e-06 9.6e-08 4.73e-07 1.58e-06 1.73e-07 1.67e-06 4.11e-07 1.39e-06 5.7e-07 5.39e-06 4.3e-07 5.01e-07 4.14e-07 9.33e-07 5.8e-07 8.2e-07 4.65e-07 2.26e-07 9.58e-07 9.21e-07 6.31e-07 2.24e-06 2.89e-07 4.25e-07 7.26e-07 1.07e-06 1.27e-06 8.35e-07 1.18e-07 1.5e-07 1.22e-06 9.13e-07 4.23e-07 1.73e-06 3.45e-07 1.31e-06 7.35e-07 2.37e-07 1.88e-06 1.23e-07 8.04e-08 1.6e-07 1.2e-07 1.29e-07 5.28e-08 5.56e-08
ENSG00000173064 HECTD4 452981 9.47e-07 9.45e-07 1.29e-07 1.25e-06 1.07e-07 2.54e-07 6.51e-07 7.52e-08 8.61e-07 2.8e-07 9.47e-07 3.36e-07 2.64e-06 2.65e-07 4.43e-07 1.46e-07 5.41e-07 4.2e-07 3.26e-07 4.36e-07 1.65e-07 3.76e-07 4e-07 2.29e-07 1.42e-06 2.4e-07 1.74e-07 2.98e-07 4.13e-07 9.22e-07 5.47e-07 7.59e-08 5.55e-08 5.89e-07 4.91e-07 2.13e-07 9.91e-07 1.55e-07 4.69e-07 3.28e-07 2.82e-07 1.23e-06 6.3e-08 5.61e-09 4e-08 3.46e-08 8.93e-08 1.2e-08 4.81e-08