logo

Genes within 1Mb (chr12:112785698:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 366860 sc-eQTL 5.16e-01 -0.0703 0.108 0.05 CD4_CTL L2
ENSG00000089022 MAPKAPK5 943470 sc-eQTL 9.66e-01 -0.00903 0.209 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 -573795 sc-eQTL 4.24e-01 0.156 0.195 0.05 CD4_CTL L2
ENSG00000089127 OAS1 -121085 sc-eQTL 8.49e-01 -0.0333 0.174 0.05 CD4_CTL L2
ENSG00000089248 ERP29 772350 sc-eQTL 1.55e-01 0.216 0.152 0.05 CD4_CTL L2
ENSG00000111300 NAA25 676902 sc-eQTL 3.20e-01 -0.203 0.203 0.05 CD4_CTL L2
ENSG00000111331 OAS3 -152746 sc-eQTL 5.41e-01 -0.12 0.196 0.05 CD4_CTL L2
ENSG00000111335 OAS2 -192697 sc-eQTL 7.63e-02 -0.338 0.19 0.05 CD4_CTL L2
ENSG00000123064 DDX54 -399781 sc-eQTL 5.04e-01 0.132 0.197 0.05 CD4_CTL L2
ENSG00000135144 DTX1 -271011 sc-eQTL 3.34e-01 -0.136 0.141 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 660160 sc-eQTL 7.98e-01 -0.0524 0.205 0.05 CD4_CTL L2
ENSG00000139405 RITA1 -399828 sc-eQTL 2.36e-01 -0.232 0.195 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 -572868 sc-eQTL 1.12e-01 -0.319 0.2 0.05 CD4_CTL L2
ENSG00000173064 HECTD4 403259 sc-eQTL 1.98e-01 -0.224 0.173 0.05 CD4_CTL L2
ENSG00000179295 PTPN11 367347 sc-eQTL 3.70e-01 -0.175 0.195 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 -435352 sc-eQTL 6.15e-01 -0.0928 0.184 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 772513 sc-eQTL 7.81e-02 0.358 0.202 0.05 CD4_CTL L2
ENSG00000234608 MAPKAPK5-AS1 942796 sc-eQTL 6.55e-01 0.0873 0.195 0.05 CD4_CTL L2
ENSG00000089009 RPL6 366860 sc-eQTL 7.29e-01 0.04 0.115 0.051 NK_CD56bright L2
ENSG00000089022 MAPKAPK5 943470 sc-eQTL 2.55e-01 -0.222 0.194 0.051 NK_CD56bright L2
ENSG00000089060 SLC8B1 -573795 sc-eQTL 2.07e-01 0.253 0.2 0.051 NK_CD56bright L2
ENSG00000089127 OAS1 -121085 sc-eQTL 6.25e-01 -0.0779 0.159 0.051 NK_CD56bright L2
ENSG00000089248 ERP29 772350 sc-eQTL 6.98e-01 -0.0711 0.183 0.051 NK_CD56bright L2
ENSG00000111300 NAA25 676902 sc-eQTL 7.19e-01 0.0675 0.188 0.051 NK_CD56bright L2
ENSG00000111331 OAS3 -152746 sc-eQTL 4.25e-01 -0.135 0.169 0.051 NK_CD56bright L2
ENSG00000111335 OAS2 -192697 sc-eQTL 2.00e-01 -0.192 0.149 0.051 NK_CD56bright L2
ENSG00000123064 DDX54 -399781 sc-eQTL 4.06e-01 -0.17 0.204 0.051 NK_CD56bright L2
ENSG00000135148 TRAFD1 660160 sc-eQTL 6.06e-01 -0.0963 0.186 0.051 NK_CD56bright L2
ENSG00000139405 RITA1 -399828 sc-eQTL 1.46e-02 -0.5 0.203 0.051 NK_CD56bright L2
ENSG00000151176 PLBD2 -572868 sc-eQTL 6.28e-01 0.0996 0.205 0.051 NK_CD56bright L2
ENSG00000173064 HECTD4 403259 sc-eQTL 7.90e-01 -0.0443 0.166 0.051 NK_CD56bright L2
ENSG00000179295 PTPN11 367347 sc-eQTL 1.59e-01 -0.257 0.182 0.051 NK_CD56bright L2
ENSG00000198270 TMEM116 772513 sc-eQTL 7.49e-02 -0.36 0.201 0.051 NK_CD56bright L2
ENSG00000234608 MAPKAPK5-AS1 942796 sc-eQTL 8.57e-01 -0.0368 0.204 0.051 NK_CD56bright L2
ENSG00000089009 RPL6 366860 sc-eQTL 8.36e-01 -0.0235 0.114 0.059 PB L2
ENSG00000089022 MAPKAPK5 943470 sc-eQTL 2.34e-01 -0.294 0.245 0.059 PB L2
ENSG00000089060 SLC8B1 -573795 sc-eQTL 7.93e-01 -0.062 0.235 0.059 PB L2
ENSG00000089127 OAS1 -121085 sc-eQTL 8.16e-02 0.291 0.166 0.059 PB L2
ENSG00000089248 ERP29 772350 sc-eQTL 5.57e-01 -0.0778 0.132 0.059 PB L2
ENSG00000111300 NAA25 676902 sc-eQTL 7.28e-01 -0.086 0.246 0.059 PB L2
ENSG00000111331 OAS3 -152746 sc-eQTL 4.86e-01 0.138 0.198 0.059 PB L2
ENSG00000111335 OAS2 -192697 sc-eQTL 9.32e-01 0.0151 0.177 0.059 PB L2
ENSG00000123064 DDX54 -399781 sc-eQTL 3.09e-01 -0.242 0.237 0.059 PB L2
ENSG00000135144 DTX1 -271011 sc-eQTL 1.34e-01 -0.316 0.209 0.059 PB L2
ENSG00000135148 TRAFD1 660160 sc-eQTL 4.75e-01 -0.181 0.252 0.059 PB L2
ENSG00000139405 RITA1 -399828 sc-eQTL 9.76e-01 -0.00525 0.176 0.059 PB L2
ENSG00000151176 PLBD2 -572868 sc-eQTL 5.84e-01 0.123 0.224 0.059 PB L2
ENSG00000173064 HECTD4 403259 sc-eQTL 8.52e-02 -0.314 0.181 0.059 PB L2
ENSG00000179295 PTPN11 367347 sc-eQTL 8.85e-01 0.035 0.242 0.059 PB L2
ENSG00000186815 TPCN1 -435352 sc-eQTL 1.60e-01 0.324 0.229 0.059 PB L2
ENSG00000198270 TMEM116 772513 sc-eQTL 5.35e-01 0.157 0.252 0.059 PB L2
ENSG00000234608 MAPKAPK5-AS1 942796 sc-eQTL 2.88e-01 0.222 0.208 0.059 PB L2
ENSG00000089009 RPL6 366860 sc-eQTL 7.53e-01 -0.0281 0.0893 0.05 Pro_T L2
ENSG00000089022 MAPKAPK5 943470 sc-eQTL 1.20e-01 -0.319 0.204 0.05 Pro_T L2
ENSG00000089060 SLC8B1 -573795 sc-eQTL 4.98e-02 -0.393 0.199 0.05 Pro_T L2
ENSG00000089127 OAS1 -121085 sc-eQTL 6.77e-01 0.0509 0.122 0.05 Pro_T L2
ENSG00000089248 ERP29 772350 sc-eQTL 1.37e-01 0.183 0.122 0.05 Pro_T L2
ENSG00000111300 NAA25 676902 sc-eQTL 6.03e-01 -0.103 0.198 0.05 Pro_T L2
ENSG00000111331 OAS3 -152746 sc-eQTL 7.30e-02 0.308 0.171 0.05 Pro_T L2
ENSG00000111335 OAS2 -192697 sc-eQTL 8.85e-01 -0.0212 0.146 0.05 Pro_T L2
ENSG00000123064 DDX54 -399781 sc-eQTL 8.97e-01 0.0224 0.173 0.05 Pro_T L2
ENSG00000135144 DTX1 -271011 sc-eQTL 9.87e-01 -0.00253 0.153 0.05 Pro_T L2
ENSG00000135148 TRAFD1 660160 sc-eQTL 9.24e-02 -0.341 0.202 0.05 Pro_T L2
ENSG00000139405 RITA1 -399828 sc-eQTL 1.40e-01 0.268 0.181 0.05 Pro_T L2
ENSG00000151176 PLBD2 -572868 sc-eQTL 7.68e-01 -0.0585 0.198 0.05 Pro_T L2
ENSG00000173064 HECTD4 403259 sc-eQTL 3.16e-01 -0.181 0.18 0.05 Pro_T L2
ENSG00000179295 PTPN11 367347 sc-eQTL 2.16e-01 0.203 0.164 0.05 Pro_T L2
ENSG00000186815 TPCN1 -435352 sc-eQTL 2.93e-02 -0.391 0.178 0.05 Pro_T L2
ENSG00000198270 TMEM116 772513 sc-eQTL 6.88e-01 0.0821 0.204 0.05 Pro_T L2
ENSG00000234608 MAPKAPK5-AS1 942796 sc-eQTL 6.48e-01 -0.0844 0.185 0.05 Pro_T L2
ENSG00000089009 RPL6 366860 sc-eQTL 1.43e-01 -0.12 0.0817 0.051 intMono L2
ENSG00000089022 MAPKAPK5 943470 sc-eQTL 9.45e-01 -0.0132 0.192 0.051 intMono L2
ENSG00000089060 SLC8B1 -573795 sc-eQTL 3.35e-01 0.192 0.199 0.051 intMono L2
ENSG00000089127 OAS1 -121085 sc-eQTL 5.36e-03 0.302 0.107 0.051 intMono L2
ENSG00000089169 RPH3A 215318 sc-eQTL 7.66e-01 -0.0547 0.183 0.051 intMono L2
ENSG00000089248 ERP29 772350 sc-eQTL 3.10e-01 -0.177 0.174 0.051 intMono L2
ENSG00000111300 NAA25 676902 sc-eQTL 3.60e-01 -0.174 0.19 0.051 intMono L2
ENSG00000111331 OAS3 -152746 sc-eQTL 4.72e-02 0.28 0.14 0.051 intMono L2
ENSG00000111335 OAS2 -192697 sc-eQTL 5.50e-01 0.0835 0.139 0.051 intMono L2
ENSG00000123064 DDX54 -399781 sc-eQTL 6.68e-01 0.0759 0.177 0.051 intMono L2
ENSG00000135148 TRAFD1 660160 sc-eQTL 6.49e-01 0.0749 0.164 0.051 intMono L2
ENSG00000139405 RITA1 -399828 sc-eQTL 4.87e-01 -0.137 0.196 0.051 intMono L2
ENSG00000139410 SDSL -636682 sc-eQTL 5.62e-01 -0.112 0.192 0.051 intMono L2
ENSG00000151176 PLBD2 -572868 sc-eQTL 9.13e-01 0.0195 0.177 0.051 intMono L2
ENSG00000173064 HECTD4 403259 sc-eQTL 3.81e-03 0.493 0.168 0.051 intMono L2
ENSG00000179295 PTPN11 367347 sc-eQTL 1.82e-01 -0.233 0.174 0.051 intMono L2
ENSG00000186815 TPCN1 -435352 sc-eQTL 7.39e-01 -0.0523 0.156 0.051 intMono L2
ENSG00000198270 TMEM116 772513 sc-eQTL 3.05e-03 0.545 0.182 0.051 intMono L2
ENSG00000234608 MAPKAPK5-AS1 942796 sc-eQTL 7.26e-02 0.365 0.202 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -573795 eQTL 0.037 0.117 0.0561 0.0 0.0 0.0437
ENSG00000089248 ERP29 772350 eQTL 0.00175 -0.0965 0.0307 0.00698 0.00212 0.0437
ENSG00000173064 HECTD4 403259 eQTL 2.29e-06 0.159 0.0334 0.0 0.0 0.0437
ENSG00000234608 MAPKAPK5-AS1 942796 eQTL 0.0356 -0.0649 0.0309 0.0 0.0 0.0437

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000173064 HECTD4 403259 1.58e-06 1.13e-06 3.3e-07 1.26e-06 3.58e-07 7.89e-07 1.49e-06 3.45e-07 1.78e-06 6.36e-07 1.84e-06 7.63e-07 2.68e-06 2.81e-07 4.55e-07 9.85e-07 8.26e-07 7.08e-07 5.46e-07 4.42e-07 5.66e-07 1.82e-06 8.84e-07 6.25e-07 2.46e-06 4.83e-07 1.06e-06 7.08e-07 1.47e-06 1.16e-06 8.51e-07 2.71e-07 2.33e-07 1.24e-06 9.13e-07 4.62e-07 7.4e-07 3.25e-07 4.69e-07 2.93e-07 3.67e-07 1.68e-06 3.74e-07 1.81e-07 1.93e-07 9.89e-07 2.56e-07 2.35e-07 2.46e-07